Wall clock time and date at job start Wed Apr 1 2020 04:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 N 1.46892 * 109.47495 * 179.97438 * 5 4 2 7 7 C 1.46900 * 111.00419 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47344 * 180.02562 * 7 6 5 9 9 O 1.21295 * 119.99583 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00077 * 180.02562 * 8 7 6 11 11 C 1.37098 * 120.00171 * 179.97438 * 10 8 7 12 12 H 1.07998 * 119.99841 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00081 * 179.97438 * 11 10 8 14 14 N 1.31421 * 120.00036 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00243 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46893 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47066 * 119.99993 * 15 13 11 18 18 H 1.48500 * 109.47442 * 240.00491 * 15 13 11 19 19 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 20 20 C 1.34781 * 119.99874 * 85.00543 * 19 2 1 21 21 O 1.21278 * 120.00033 * 359.97438 * 20 19 2 22 22 C 1.50703 * 120.00101 * 179.97438 * 20 19 2 23 23 H 1.08997 * 112.82359 * 311.11030 * 22 20 19 24 24 C 1.53520 * 113.58828 * 179.97438 * 22 20 19 25 25 C 1.51611 * 87.24594 * 245.40980 * 24 22 20 26 26 C 1.38375 * 147.53005 * 180.02562 * 25 24 22 27 27 C 1.38089 * 120.32990 * 179.97438 * 26 25 24 28 28 C 1.38251 * 119.95470 * 0.02562 * 27 26 25 29 29 C 1.38096 * 119.95554 * 0.02562 * 28 27 26 30 30 C 1.38374 * 120.32413 * 359.97091 * 29 28 27 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 34 34 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 35 35 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 36 36 H 1.08997 * 109.47151 * 300.00410 * 5 4 2 37 37 H 1.09006 * 109.46918 * 59.99351 * 5 4 2 38 38 H 1.00901 * 110.99850 * 303.95527 * 6 5 4 39 39 H 1.09005 * 109.46736 * 300.00378 * 7 6 5 40 40 H 1.09000 * 109.46997 * 59.99911 * 7 6 5 41 41 H 0.97008 * 120.00001 * 359.97438 * 10 8 7 42 42 H 0.97005 * 119.99972 * 179.97438 * 14 13 11 43 43 H 0.97002 * 120.00410 * 264.99761 * 19 2 1 44 44 H 1.09007 * 113.58623 * 359.97438 * 24 22 20 45 45 H 1.08997 * 113.58870 * 130.81655 * 24 22 20 46 46 H 1.07999 * 119.83298 * 359.97438 * 26 25 24 47 47 H 1.08001 * 120.02179 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.02324 * 179.97438 * 28 27 26 49 49 H 1.07999 * 119.83523 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 7 4.0545 -1.3054 2.5134 7 6 5.5180 -1.2219 2.6089 8 6 5.9824 -1.9418 3.8487 9 8 5.1736 -2.4719 4.5810 10 7 7.2961 -1.9958 4.1444 11 6 7.7185 -2.6503 5.2726 12 1 6.9985 -3.1230 5.9242 13 6 9.0731 -2.7064 5.5771 14 7 9.9493 -2.1316 4.7840 15 14 9.6486 -3.5975 7.1147 16 1 8.4742 -4.1545 7.8328 17 1 10.5646 -4.7024 6.7328 18 1 10.3647 -2.6446 8.0004 19 7 2.0183 -0.6907 -1.1961 20 6 2.1470 -0.0183 -2.3572 21 8 1.8583 1.1583 -2.4117 22 6 2.6499 -0.7286 -3.5875 23 1 3.5561 -1.3052 -3.4022 24 6 2.7384 0.1750 -4.8254 25 6 1.6547 -0.6874 -5.4421 26 6 0.8378 -0.9343 -6.5314 27 6 -0.0548 -1.9877 -6.5091 28 6 -0.1350 -2.8011 -5.3941 29 6 0.6772 -2.5586 -4.3038 30 6 1.5734 -1.5044 -4.3210 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6054 -0.2617 2.1370 35 1 1.7516 -1.7715 1.2056 36 1 3.9994 -1.0729 0.4260 37 1 3.8533 0.4369 1.3572 38 1 3.6166 -0.9398 3.3457 39 1 5.9664 -1.6857 1.7303 40 1 5.8196 -0.1758 2.6613 41 1 7.9429 -1.5715 3.5590 42 1 10.8949 -2.1705 4.9968 43 1 2.2490 -1.6319 -1.1526 44 1 2.4247 1.2021 -4.6391 45 1 3.6948 0.1112 -5.3445 46 1 0.8986 -0.2998 -7.4033 47 1 -0.6897 -2.1761 -7.3622 48 1 -0.8329 -3.6250 -5.3753 49 1 0.6132 -3.1955 -3.4340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268395358.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:53 Heat of formation + Delta-G solvation = -42.506552 kcal Electronic energy + Delta-G solvation = -28587.900694 eV Core-core repulsion = 24514.522170 eV Total energy + Delta-G solvation = -4073.378524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.96208 -40.27267 -40.07577 -37.99207 -36.38901 -36.04224 -35.68052 -33.29038 -32.75093 -31.67567 -30.35725 -28.55692 -27.79679 -26.39340 -25.72184 -23.58724 -23.05217 -22.17649 -21.68654 -21.08236 -20.71626 -19.90530 -18.50902 -17.84402 -17.70332 -17.33091 -16.98965 -16.46722 -16.25126 -16.14899 -15.91230 -15.44139 -15.42655 -15.29556 -15.05163 -14.76126 -14.44834 -14.02185 -13.93555 -13.86420 -13.62021 -13.50855 -13.47011 -13.24017 -13.04918 -12.90225 -12.87641 -12.76592 -12.41353 -12.22284 -12.12225 -12.10692 -11.93830 -11.77938 -11.51488 -11.48587 -10.99329 -10.35804 -10.12015 -10.01838 -9.79029 -9.52594 -9.34496 -8.47064 -5.95953 0.30585 0.43855 1.36910 1.42394 1.52306 1.56620 2.04645 2.15822 2.29130 2.81202 2.88582 3.14240 3.20222 3.41134 3.43122 3.48590 3.81969 3.95885 4.06201 4.10443 4.19299 4.20876 4.28949 4.32761 4.43088 4.48875 4.53349 4.61456 4.64453 4.68756 4.69566 4.79633 4.82767 4.88773 4.94051 5.00991 5.06746 5.14861 5.19698 5.29893 5.41109 5.45789 5.54136 5.56646 5.72992 5.88350 6.04607 6.09620 6.39721 6.52054 6.59514 7.12276 7.20082 7.55793 8.10802 8.70511 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.001636 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.244099 B =17110.980500 C =17666.449714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 H 0.073 0.927 4 C -0.113 4.113 5 C 0.062 3.938 6 N -0.680 5.680 7 C 0.064 3.936 8 C 0.438 3.562 9 O -0.623 6.623 10 N -0.574 5.574 11 C -0.334 4.334 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.271 1.271 19 N -0.709 5.709 20 C 0.531 3.469 21 O -0.575 6.575 22 C -0.065 4.065 23 H 0.145 0.855 24 C -0.056 4.056 25 C -0.140 4.140 26 C -0.112 4.112 27 C -0.116 4.116 28 C -0.127 4.127 29 C -0.098 4.098 30 C -0.140 4.140 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.344 0.656 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.413 0.587 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.132 0.868 47 H 0.150 0.850 48 H 0.149 0.851 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.803 2.696 -23.482 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.067 4.067 6 N -0.312 5.312 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.464 4.464 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.196 1.196 19 N -0.360 5.360 20 C 0.318 3.682 21 O -0.455 6.455 22 C -0.085 4.085 23 H 0.163 0.837 24 C -0.093 4.093 25 C -0.140 4.140 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.145 4.145 29 C -0.115 4.115 30 C -0.140 4.140 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.163 0.837 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.250 0.750 44 H 0.110 0.890 45 H 0.135 0.865 46 H 0.150 0.850 47 H 0.167 0.833 48 H 0.167 0.833 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.340 2.568 -23.300 29.763 hybrid contribution 1.009 0.388 0.794 1.341 sum -17.331 2.956 -22.506 28.560 Atomic orbital electron populations 1.22093 0.94470 1.02758 1.02114 1.20888 0.94409 0.96712 0.83621 0.90912 1.21765 0.94067 1.02299 0.97026 1.22027 0.95796 0.95962 0.92903 1.60110 1.03680 1.61063 1.06377 1.21530 0.90302 0.98966 0.96009 1.20879 0.82414 0.85057 0.89142 1.90489 1.54210 1.52014 1.54190 1.41948 1.06370 1.49226 1.23538 1.19719 0.92394 1.32014 1.02241 0.90253 1.26053 0.95172 0.98084 1.02006 1.69684 1.02933 1.44528 1.39009 0.84858 0.78052 0.78002 0.77339 1.19751 1.19605 1.19628 1.46052 1.66338 1.14657 1.08979 1.20375 0.76642 0.86507 0.84666 1.90678 1.51710 1.17726 1.85392 1.21577 0.98401 0.96280 0.92288 0.83742 1.21824 0.97689 0.98248 0.91577 1.22481 0.98091 0.98197 0.95252 1.20620 0.95739 0.98657 0.97955 1.21394 0.98242 0.94504 0.99272 1.21355 0.99472 1.00567 0.93078 1.20624 0.94814 0.96469 0.99638 1.21839 0.98318 0.97000 0.96881 0.91343 0.90458 0.94044 0.89634 0.89754 0.90329 0.95249 0.83714 0.87787 0.91958 0.76989 0.91301 0.74991 0.89015 0.86466 0.84987 0.83258 0.83337 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 2 C 0.15 2.53 2.57 44.99 0.12 2.64 16 3 H 0.07 1.52 7.58 -2.39 -0.02 1.50 16 4 C -0.11 -1.91 5.01 30.59 0.15 -1.75 16 5 C 0.06 1.31 5.57 86.30 0.48 1.79 16 6 N -0.68 -20.19 6.13 -517.94 -3.17 -23.36 16 7 C 0.06 2.16 6.17 85.56 0.53 2.68 16 8 C 0.44 20.63 7.82 87.66 0.69 21.32 16 9 O -0.62 -34.19 15.78 -3.08 -0.05 -34.24 16 10 N -0.57 -29.33 5.29 -306.99 -1.62 -30.95 16 11 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 14 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 15 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 N -0.71 -11.20 4.53 -442.52 -2.00 -13.20 16 20 C 0.53 10.61 7.33 87.66 0.64 11.25 16 21 O -0.58 -16.05 15.37 -3.02 -0.05 -16.09 16 22 C -0.06 -1.00 4.34 -11.83 -0.05 -1.05 16 23 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 24 C -0.06 -0.89 7.77 30.30 0.24 -0.66 16 25 C -0.14 -2.45 7.49 -19.38 -0.15 -2.59 16 26 C -0.11 -1.69 10.03 22.27 0.22 -1.47 16 27 C -0.12 -1.47 10.04 22.24 0.22 -1.25 16 28 C -0.13 -1.61 10.04 22.24 0.22 -1.39 16 29 C -0.10 -1.44 10.03 22.27 0.22 -1.21 16 30 C -0.14 -2.35 6.97 -19.38 -0.14 -2.49 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.54 7.75 -2.39 -0.02 1.52 16 37 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.34 10.78 8.43 -89.69 -0.76 10.02 16 39 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.40 19.23 7.90 -92.70 -0.73 18.50 16 42 H 0.28 13.93 8.31 -92.70 -0.77 13.15 16 43 H 0.41 4.82 8.60 -92.71 -0.80 4.02 16 44 H 0.09 1.78 7.04 -2.38 -0.02 1.76 16 45 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 47 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 48 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 49 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -73.91 413.28 -0.52 -74.43 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -1.30 Total: 42.27 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.37 Total: 5.62 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -6.52 Total: -116.74 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.09 Total: -50.33 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -73.91 -0.52 -74.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268395358.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.919 kcal (2) G-P(sol) polarization free energy of solvation -73.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds