Wall clock time and date at job start Wed Apr 1 2020 03:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47156 * 90.00281 * 9 7 5 11 11 H 1.48502 * 109.47158 * 210.00109 * 9 7 5 12 12 H 1.48496 * 109.47022 * 329.99784 * 9 7 5 13 13 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 14 14 C 1.38229 * 119.99649 * 279.72729 * 13 2 1 15 15 C 1.38241 * 119.99825 * 179.76463 * 14 13 2 16 16 C 1.38227 * 120.00146 * 0.50714 * 15 14 13 17 17 C 1.50697 * 120.00400 * 179.72295 * 16 15 14 18 18 N 1.46499 * 109.47224 * 270.02289 * 17 16 15 19 19 C 1.34777 * 119.99702 * 180.02562 * 18 17 16 20 20 O 1.21272 * 120.00290 * 359.97438 * 19 18 17 21 21 C 1.50707 * 119.99641 * 180.02562 * 19 18 17 22 22 H 1.09001 * 109.39554 * 300.16521 * 21 19 18 23 23 C 1.53071 * 109.39706 * 180.42407 * 21 19 18 24 24 C 1.53330 * 108.43141 * 190.97636 * 23 21 19 25 25 C 1.52918 * 108.68434 * 67.51098 * 24 23 21 26 26 N 1.45757 * 110.49059 * 309.25158 * 25 24 23 27 27 C 1.33359 * 124.10189 * 19.10105 * 26 25 24 28 28 O 1.21281 * 118.24270 * 177.75682 * 27 26 25 29 29 C 1.38236 * 119.99825 * 359.74272 * 16 15 14 30 30 C 1.38235 * 120.00263 * 0.02562 * 29 16 15 31 31 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 34 34 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 35 35 H 0.97006 * 120.00314 * 179.97438 * 8 7 5 36 36 H 1.08005 * 120.00524 * 359.97438 * 14 13 2 37 37 H 1.08003 * 120.00056 * 180.22777 * 15 14 13 38 38 H 1.09000 * 109.46647 * 30.02471 * 17 16 15 39 39 H 1.08997 * 109.46955 * 150.01968 * 17 16 15 40 40 H 0.96999 * 119.99835 * 359.97438 * 18 17 16 41 41 H 1.08993 * 109.67255 * 310.69928 * 23 21 19 42 42 H 1.09000 * 109.67110 * 71.24055 * 23 21 19 43 43 H 1.08996 * 109.59250 * 307.75251 * 24 23 21 44 44 H 1.09004 * 109.60052 * 187.27119 * 24 23 21 45 45 H 1.09000 * 109.29928 * 188.93879 * 25 24 23 46 46 H 1.09002 * 109.13687 * 69.46011 * 25 24 23 47 47 H 0.96996 * 117.95068 * 199.07536 * 26 25 24 48 48 H 1.07996 * 120.00521 * 179.97438 * 29 16 15 49 49 H 1.07996 * 120.00522 * 179.97438 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.9246 -1.9391 3.4500 9 14 2.7892 0.2696 5.1185 10 1 1.5212 0.1782 5.8860 11 1 3.8936 -0.3237 5.9145 12 1 3.0943 1.6948 4.8343 13 6 2.0324 -0.7103 -1.2306 14 6 2.0720 -2.0917 -1.2634 15 6 2.5283 -2.7434 -2.3939 16 6 2.9547 -2.0136 -3.4877 17 6 3.4579 -2.7238 -4.7178 18 7 4.9031 -2.9347 -4.6031 19 6 5.5742 -3.5553 -5.5935 20 8 4.9817 -3.9397 -6.5794 21 6 7.0608 -3.7727 -5.4753 22 1 7.5609 -2.8091 -5.3776 23 6 7.5720 -4.4841 -6.7305 24 6 9.0139 -4.9393 -6.4765 25 6 9.0011 -6.0342 -5.4091 26 7 8.2357 -5.6038 -4.2458 27 6 7.3476 -4.6090 -4.2614 28 8 6.7395 -4.3665 -3.2405 29 6 2.9198 -0.6321 -3.4529 30 6 2.4591 0.0196 -2.3242 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 2.2491 -1.6318 1.1525 35 1 3.2480 -2.3964 4.2420 36 1 1.7434 -2.6619 -0.4070 37 1 2.5558 -3.8227 -2.4210 38 1 2.9565 -3.6871 -4.8118 39 1 3.2479 -2.1175 -5.5989 40 1 5.3770 -2.6269 -3.8147 41 1 6.9457 -5.3507 -6.9419 42 1 7.5476 -3.7977 -7.5769 43 1 9.6077 -4.0947 -6.1270 44 1 9.4411 -5.3329 -7.3989 45 1 10.0248 -6.2536 -5.1057 46 1 8.5482 -6.9340 -5.8255 47 1 8.3811 -6.0702 -3.4079 48 1 3.2533 -0.0618 -4.3072 49 1 2.4323 1.0989 -2.2969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272690548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:06 Heat of formation + Delta-G solvation = -45.656889 kcal Electronic energy + Delta-G solvation = -29549.540797 eV Core-core repulsion = 25476.025664 eV Total energy + Delta-G solvation = -4073.515133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.20827 -39.52679 -38.86292 -36.94428 -35.89993 -34.42196 -33.49378 -32.27636 -30.74298 -30.58473 -29.91240 -28.29096 -26.37010 -24.88182 -23.80304 -23.18487 -22.50954 -21.63941 -21.00833 -19.71688 -19.47241 -17.98035 -17.46037 -17.32980 -16.86534 -16.20729 -15.69983 -15.38474 -15.27050 -14.90028 -14.67446 -14.55598 -14.33679 -14.02519 -13.95649 -13.74260 -13.41150 -13.29469 -13.02014 -12.85438 -12.49790 -12.28485 -12.19823 -11.99576 -11.82963 -11.79447 -11.58777 -11.48496 -11.10429 -10.86318 -10.81714 -10.56327 -10.28437 -10.22710 -10.05522 -9.94770 -9.64710 -9.50052 -9.10715 -8.94718 -8.55709 -8.24520 -6.96494 -5.75378 -3.04186 1.54528 1.76938 2.09006 2.41116 2.92754 3.18939 3.44484 3.49363 3.51239 4.03912 4.10306 4.18815 4.24163 4.32241 4.60566 4.69951 4.79058 4.82006 4.85985 5.05972 5.09837 5.23723 5.28762 5.32448 5.37441 5.46287 5.48808 5.59719 5.65792 5.74961 5.77799 5.85022 6.03227 6.07299 6.31551 6.31848 6.35165 6.38403 6.41695 6.55087 6.67368 6.78002 6.84420 6.85555 7.00021 7.21739 7.35081 7.44033 7.71063 7.79218 8.06814 8.42730 9.53960 10.10234 10.45500 11.47218 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.002293 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.280927 B =12207.906659 C =13881.094986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.204 3.796 3 H 0.055 0.945 4 N -0.721 5.721 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.054 4.054 14 C -0.105 4.105 15 C -0.094 4.094 16 C -0.129 4.129 17 C 0.167 3.833 18 N -0.705 5.705 19 C 0.528 3.472 20 O -0.542 6.542 21 C -0.127 4.127 22 H 0.130 0.870 23 C -0.105 4.105 24 C -0.139 4.139 25 C 0.107 3.893 26 N -0.716 5.716 27 C 0.526 3.474 28 O -0.534 6.534 29 C -0.103 4.103 30 C -0.122 4.122 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.413 0.587 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.405 0.595 48 H 0.117 0.883 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.591 -5.812 -23.717 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.073 0.927 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.055 4.055 14 C -0.124 4.124 15 C -0.113 4.113 16 C -0.130 4.130 17 C 0.044 3.956 18 N -0.357 5.357 19 C 0.313 3.687 20 O -0.420 6.420 21 C -0.152 4.152 22 H 0.148 0.852 23 C -0.143 4.143 24 C -0.176 4.176 25 C -0.018 4.018 26 N -0.369 5.369 27 C 0.311 3.689 28 O -0.411 6.411 29 C -0.122 4.122 30 C -0.141 4.141 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.250 0.750 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.241 0.759 48 H 0.135 0.865 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.819 -5.715 -23.935 26.881 hybrid contribution 0.618 0.059 1.691 1.801 sum 11.437 -5.656 -22.244 25.644 Atomic orbital electron populations 1.22419 0.98267 1.01158 1.00101 1.19245 0.92123 0.94967 0.84243 0.92662 1.42529 1.78183 1.10752 1.04906 1.19237 1.36668 0.93974 0.87141 0.91093 1.24747 1.02079 0.96013 0.98083 1.69664 1.50735 1.08676 1.28886 0.86188 0.77279 0.78791 0.83917 1.21735 1.21797 1.20768 1.20516 0.95361 0.94043 0.95591 1.21076 0.99181 0.94421 0.97676 1.21014 0.97979 0.99533 0.92772 1.19623 1.03808 0.93832 0.95706 1.20154 0.79971 0.99920 0.95554 1.46196 1.09039 1.58608 1.21838 1.19777 0.87930 0.77983 0.83057 1.90703 1.69313 1.50932 1.31069 1.21481 0.95904 1.01909 0.95856 0.85201 1.21514 0.95462 1.01704 0.95589 1.21935 0.97342 0.98992 0.99376 1.21458 0.96220 0.97673 0.86411 1.45363 1.41839 1.35497 1.14221 1.19577 0.79289 0.80689 0.89360 1.90847 1.48350 1.68358 1.33529 1.20897 0.99771 0.93443 0.98052 1.20990 1.00215 0.99705 0.93189 0.92423 0.93319 0.94325 0.77959 0.93480 0.85422 0.86389 0.90948 0.90846 0.74992 0.89838 0.89723 0.90675 0.89110 0.90168 0.91326 0.75927 0.86545 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.47 37.16 0.35 -2.60 16 2 C 0.20 4.17 3.09 -69.08 -0.21 3.95 16 3 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 4 N -0.72 -18.31 5.07 -54.55 -0.28 -18.59 16 5 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 9 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 C -0.05 -0.98 4.96 -104.62 -0.52 -1.50 16 14 C -0.11 -1.89 9.06 -39.58 -0.36 -2.25 16 15 C -0.09 -1.48 9.70 -39.58 -0.38 -1.87 16 16 C -0.13 -1.81 5.25 -104.63 -0.55 -2.36 16 17 C 0.17 2.11 5.80 -5.20 -0.03 2.08 16 18 N -0.70 -8.86 5.03 -61.47 -0.31 -9.16 16 19 C 0.53 6.47 7.06 -10.98 -0.08 6.39 16 20 O -0.54 -7.99 15.79 5.56 0.09 -7.90 16 21 C -0.13 -1.13 2.78 -93.14 -0.26 -1.39 16 22 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 23 C -0.10 -0.69 4.78 -26.52 -0.13 -0.82 16 24 C -0.14 -0.52 6.02 -26.60 -0.16 -0.68 16 25 C 0.11 0.43 7.17 -4.48 -0.03 0.40 16 26 N -0.72 -5.22 5.45 -61.39 -0.33 -5.56 16 27 C 0.53 5.49 7.28 -11.87 -0.09 5.40 16 28 O -0.53 -7.80 15.57 5.56 0.09 -7.71 16 29 C -0.10 -1.41 9.70 -39.58 -0.38 -1.80 16 30 C -0.12 -1.89 9.67 -39.58 -0.38 -2.27 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.39 10.34 6.05 -40.82 -0.25 10.10 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.13 2.46 6.90 -52.48 -0.36 2.09 16 37 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 39 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.41 5.38 7.13 -40.82 -0.29 5.09 16 41 H 0.08 0.67 7.72 -51.93 -0.40 0.27 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 44 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.40 2.75 8.80 -40.82 -0.36 2.39 16 48 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 49 H 0.12 1.64 8.04 -52.49 -0.42 1.22 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -34.92 402.31 -9.97 -44.88 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -7.53 Total: 14.72 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.46 Total: -6.60 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.20 Total: -61.01 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.17 Total: -15.61 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.92 -9.97 -44.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272690548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.774 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds