Wall clock time and date at job start Wed Apr 1 2020 03:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47156 * 90.00281 * 9 7 5 11 11 H 1.48502 * 109.47158 * 210.00109 * 9 7 5 12 12 H 1.48496 * 109.47022 * 329.99784 * 9 7 5 13 13 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 14 14 C 1.38229 * 119.99649 * 279.72729 * 13 2 1 15 15 C 1.38241 * 119.99825 * 179.76463 * 14 13 2 16 16 C 1.38227 * 120.00146 * 0.50714 * 15 14 13 17 17 C 1.50697 * 120.00400 * 179.72295 * 16 15 14 18 18 N 1.46499 * 109.47224 * 270.02289 * 17 16 15 19 19 C 1.34777 * 119.99702 * 180.02562 * 18 17 16 20 20 O 1.21272 * 120.00290 * 359.97438 * 19 18 17 21 21 C 1.50707 * 119.99641 * 180.02562 * 19 18 17 22 22 H 1.09001 * 109.39554 * 300.16521 * 21 19 18 23 23 C 1.53071 * 109.39706 * 180.42407 * 21 19 18 24 24 C 1.53330 * 108.43141 * 190.97636 * 23 21 19 25 25 C 1.52918 * 108.68434 * 67.51098 * 24 23 21 26 26 N 1.45757 * 110.49059 * 309.25158 * 25 24 23 27 27 C 1.33359 * 124.10189 * 19.10105 * 26 25 24 28 28 O 1.21281 * 118.24270 * 177.75682 * 27 26 25 29 29 C 1.38236 * 119.99825 * 359.74272 * 16 15 14 30 30 C 1.38235 * 120.00263 * 0.02562 * 29 16 15 31 31 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 34 34 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 35 35 H 0.97006 * 120.00314 * 179.97438 * 8 7 5 36 36 H 1.08005 * 120.00524 * 359.97438 * 14 13 2 37 37 H 1.08003 * 120.00056 * 180.22777 * 15 14 13 38 38 H 1.09000 * 109.46647 * 30.02471 * 17 16 15 39 39 H 1.08997 * 109.46955 * 150.01968 * 17 16 15 40 40 H 0.96999 * 119.99835 * 359.97438 * 18 17 16 41 41 H 1.08993 * 109.67255 * 310.69928 * 23 21 19 42 42 H 1.09000 * 109.67110 * 71.24055 * 23 21 19 43 43 H 1.08996 * 109.59250 * 307.75251 * 24 23 21 44 44 H 1.09004 * 109.60052 * 187.27119 * 24 23 21 45 45 H 1.09000 * 109.29928 * 188.93879 * 25 24 23 46 46 H 1.09002 * 109.13687 * 69.46011 * 25 24 23 47 47 H 0.96996 * 117.95068 * 199.07536 * 26 25 24 48 48 H 1.07996 * 120.00521 * 179.97438 * 29 16 15 49 49 H 1.07996 * 120.00522 * 179.97438 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.9246 -1.9391 3.4500 9 14 2.7892 0.2696 5.1185 10 1 1.5212 0.1782 5.8860 11 1 3.8936 -0.3237 5.9145 12 1 3.0943 1.6948 4.8343 13 6 2.0324 -0.7103 -1.2306 14 6 2.0720 -2.0917 -1.2634 15 6 2.5283 -2.7434 -2.3939 16 6 2.9547 -2.0136 -3.4877 17 6 3.4579 -2.7238 -4.7178 18 7 4.9031 -2.9347 -4.6031 19 6 5.5742 -3.5553 -5.5935 20 8 4.9817 -3.9397 -6.5794 21 6 7.0608 -3.7727 -5.4753 22 1 7.5609 -2.8091 -5.3776 23 6 7.5720 -4.4841 -6.7305 24 6 9.0139 -4.9393 -6.4765 25 6 9.0011 -6.0342 -5.4091 26 7 8.2357 -5.6038 -4.2458 27 6 7.3476 -4.6090 -4.2614 28 8 6.7395 -4.3665 -3.2405 29 6 2.9198 -0.6321 -3.4529 30 6 2.4591 0.0196 -2.3242 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 2.2491 -1.6318 1.1525 35 1 3.2480 -2.3964 4.2420 36 1 1.7434 -2.6619 -0.4070 37 1 2.5558 -3.8227 -2.4210 38 1 2.9565 -3.6871 -4.8118 39 1 3.2479 -2.1175 -5.5989 40 1 5.3770 -2.6269 -3.8147 41 1 6.9457 -5.3507 -6.9419 42 1 7.5476 -3.7977 -7.5769 43 1 9.6077 -4.0947 -6.1270 44 1 9.4411 -5.3329 -7.3989 45 1 10.0248 -6.2536 -5.1057 46 1 8.5482 -6.9340 -5.8255 47 1 8.3811 -6.0702 -3.4079 48 1 3.2533 -0.0618 -4.3072 49 1 2.4323 1.0989 -2.2969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272690548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:05 Heat of formation + Delta-G solvation = -70.120211 kcal Electronic energy + Delta-G solvation = -29550.601606 eV Core-core repulsion = 25476.025664 eV Total energy + Delta-G solvation = -4074.575942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.99464 -40.68625 -39.90784 -37.67891 -37.34932 -35.72429 -34.24017 -33.98835 -31.99545 -31.75752 -30.87613 -29.97147 -27.40032 -26.00669 -25.40849 -23.84266 -23.76642 -22.98115 -21.88954 -21.11955 -20.14278 -19.39924 -18.75069 -18.16698 -17.64463 -17.35758 -16.91623 -16.68168 -16.35846 -16.04289 -15.77139 -15.66638 -15.23596 -15.14023 -15.04427 -14.73549 -14.70471 -14.42515 -14.34976 -14.23686 -13.78262 -13.50376 -13.42328 -13.07980 -12.97204 -12.83837 -12.72507 -12.44905 -12.40819 -12.25693 -12.13939 -12.02451 -11.93862 -11.61237 -11.55524 -11.16109 -11.00811 -10.86750 -10.13687 -10.08893 -9.80508 -9.55484 -9.03466 -7.94165 -5.23163 0.29743 0.51790 1.24245 1.46138 1.48320 1.56381 1.56569 2.20360 2.34347 2.55808 2.92045 3.39878 3.44711 3.49824 3.64325 3.77185 3.85801 3.86614 3.97373 4.02579 4.13333 4.17026 4.24205 4.33811 4.51230 4.52371 4.57961 4.64490 4.75990 4.76439 4.77999 4.84628 5.00090 5.04810 5.05531 5.08148 5.10960 5.20377 5.30696 5.37167 5.40925 5.49669 5.54101 5.62269 5.74698 5.82014 6.08615 6.20786 6.27506 6.44915 7.05250 7.12431 7.33246 8.08217 8.32244 9.29561 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.002293 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.280927 B =12207.906659 C =13881.094986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.199 3.801 3 H 0.057 0.943 4 N -0.736 5.736 5 C -0.238 4.238 6 H 0.079 0.921 7 C -0.079 4.079 8 N -0.972 5.972 9 Si 0.974 3.026 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.267 1.267 13 C -0.074 4.074 14 C -0.124 4.124 15 C -0.101 4.101 16 C -0.117 4.117 17 C 0.170 3.830 18 N -0.706 5.706 19 C 0.525 3.475 20 O -0.570 6.570 21 C -0.122 4.122 22 H 0.153 0.847 23 C -0.102 4.102 24 C -0.132 4.132 25 C 0.098 3.902 26 N -0.708 5.708 27 C 0.520 3.480 28 O -0.587 6.587 29 C -0.092 4.092 30 C -0.120 4.120 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.373 0.627 35 H 0.250 0.750 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.411 0.589 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.406 0.594 48 H 0.152 0.848 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.224 -4.523 -26.158 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.091 3.909 3 H 0.075 0.925 4 N -0.377 5.377 5 C -0.370 4.370 6 H 0.097 0.903 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.803 3.197 10 H -0.214 1.214 11 H -0.224 1.224 12 H -0.192 1.192 13 C -0.075 4.075 14 C -0.142 4.142 15 C -0.120 4.120 16 C -0.117 4.117 17 C 0.047 3.953 18 N -0.357 5.357 19 C 0.310 3.690 20 O -0.450 6.450 21 C -0.146 4.146 22 H 0.171 0.829 23 C -0.140 4.140 24 C -0.169 4.169 25 C -0.024 4.024 26 N -0.359 5.359 27 C 0.306 3.694 28 O -0.468 6.468 29 C -0.110 4.110 30 C -0.138 4.138 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.206 0.794 35 H 0.059 0.941 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.248 0.752 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.134 0.866 45 H 0.125 0.875 46 H 0.094 0.906 47 H 0.242 0.758 48 H 0.170 0.830 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.465 -4.410 -26.436 29.558 hybrid contribution 0.120 -0.391 2.286 2.322 sum 12.585 -4.801 -24.150 27.652 Atomic orbital electron populations 1.22256 0.96747 1.00813 1.01019 1.19428 0.93074 0.94730 0.83626 0.92459 1.42750 1.78486 1.10437 1.06021 1.19657 1.34860 0.94348 0.88109 0.90307 1.25587 1.02993 0.96926 1.01582 1.69839 1.52681 1.10360 1.29375 0.85126 0.76816 0.78089 0.79663 1.21447 1.22426 1.19211 1.20347 0.97404 0.93971 0.95799 1.20933 1.00860 0.94682 0.97774 1.21078 0.98178 0.99926 0.92789 1.19769 1.02356 0.94259 0.95337 1.20120 0.80218 0.99711 0.95236 1.46231 1.08898 1.58684 1.21904 1.20328 0.89310 0.77039 0.82294 1.90684 1.70280 1.51943 1.32070 1.21533 0.93615 1.03115 0.96315 0.82932 1.21537 0.96940 1.00944 0.94560 1.21959 0.95385 0.99190 1.00363 1.21784 0.97190 0.98027 0.85427 1.45470 1.40831 1.34103 1.15461 1.19877 0.79274 0.81204 0.89083 1.90824 1.50558 1.70098 1.35315 1.21236 0.98076 0.93252 0.98425 1.21222 0.99234 1.00769 0.92597 0.93702 0.94310 0.91044 0.79382 0.94142 0.88075 0.86092 0.91666 0.89251 0.75195 0.91619 0.88956 0.89762 0.86611 0.87457 0.90586 0.75790 0.83011 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.47 71.98 0.68 -4.79 16 2 C 0.20 8.19 3.09 44.25 0.14 8.33 16 3 H 0.06 2.31 7.94 -2.39 -0.02 2.29 16 4 N -0.74 -38.48 5.07 -326.50 -1.66 -40.14 16 5 C -0.24 -13.49 9.93 84.04 0.83 -12.66 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 7 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 8 N -0.97 -61.38 13.06 21.65 0.28 -61.09 16 9 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C -0.07 -2.69 4.96 -19.86 -0.10 -2.78 16 14 C -0.12 -4.64 9.06 22.27 0.20 -4.44 16 15 C -0.10 -3.24 9.70 22.27 0.22 -3.02 16 16 C -0.12 -3.13 5.25 -19.87 -0.10 -3.24 16 17 C 0.17 4.10 5.80 85.63 0.50 4.59 16 18 N -0.71 -17.23 5.03 -466.80 -2.35 -19.58 16 19 C 0.52 12.45 7.06 87.66 0.62 13.07 16 20 O -0.57 -16.41 15.79 -3.01 -0.05 -16.46 16 21 C -0.12 -2.00 2.78 -12.43 -0.03 -2.04 16 22 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 23 C -0.10 -1.14 4.78 30.73 0.15 -0.99 16 24 C -0.13 -0.56 6.02 30.68 0.18 -0.38 16 25 C 0.10 0.53 7.17 86.49 0.62 1.15 16 26 N -0.71 -9.44 5.45 -467.31 -2.55 -11.99 16 27 C 0.52 10.57 7.28 87.71 0.64 11.21 16 28 O -0.59 -17.51 15.57 -3.03 -0.05 -17.56 16 29 C -0.09 -2.27 9.70 22.27 0.22 -2.05 16 30 C -0.12 -3.46 9.67 22.27 0.22 -3.25 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.37 21.10 6.05 -92.71 -0.56 20.54 16 35 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 36 H 0.10 4.24 6.90 -2.91 -0.02 4.22 16 37 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 38 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 39 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 40 H 0.41 10.56 7.13 -92.71 -0.66 9.90 16 41 H 0.07 0.98 7.72 -2.39 -0.02 0.97 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.27 8.12 -2.39 -0.02 0.25 16 44 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.41 5.22 8.80 -92.71 -0.82 4.41 16 48 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 49 H 0.14 3.44 8.04 -2.91 -0.02 3.42 16 Total: -1.00 -78.43 402.31 0.05 -78.38 By element: Atomic # 1 Polarization: 45.78 SS G_CDS: -1.05 Total: 44.73 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.44 Total: -5.47 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -6.27 Total: -132.79 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.09 Total: -34.02 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -78.43 0.05 -78.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272690548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.264 kcal (2) G-P(sol) polarization free energy of solvation -78.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds