Wall clock time and date at job start Wed Apr 1 2020 03:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47048 * 2 1 4 4 N 1.46501 * 109.46786 * 239.99680 * 2 1 3 5 5 C 1.36941 * 119.99796 * 85.00274 * 4 2 1 6 6 H 1.07994 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99652 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00514 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99661 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47349 * 89.99732 * 9 7 5 11 11 H 1.48501 * 109.46865 * 209.99636 * 9 7 5 12 12 H 1.48494 * 109.46814 * 329.99431 * 9 7 5 13 13 C 1.50700 * 109.47291 * 120.00223 * 2 1 3 14 14 C 1.38241 * 119.99638 * 260.00133 * 13 2 1 15 15 C 1.38238 * 119.99733 * 180.02562 * 14 13 2 16 16 C 1.38231 * 120.00150 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99902 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47387 * 89.99510 * 17 16 15 19 19 C 1.34778 * 119.99863 * 179.97438 * 18 17 16 20 20 O 1.21273 * 119.99983 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99859 * 180.02562 * 19 18 17 22 22 H 1.09005 * 109.32697 * 300.22133 * 21 19 18 23 23 C 1.53064 * 109.40253 * 180.43509 * 21 19 18 24 24 C 1.53342 * 108.42647 * 190.97127 * 23 21 19 25 25 C 1.52927 * 108.67424 * 67.52740 * 24 23 21 26 26 N 1.45768 * 110.42123 * 309.02798 * 25 24 23 27 27 C 1.33356 * 124.09246 * 19.58391 * 26 25 24 28 28 O 1.21283 * 118.24896 * 177.48435 * 27 26 25 29 29 C 1.38231 * 119.99921 * 0.24743 * 16 15 14 30 30 C 1.38232 * 120.00150 * 80.01517 * 13 2 1 31 31 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46922 * 300.00167 * 1 2 3 33 33 H 1.08997 * 109.47366 * 60.00416 * 1 2 3 34 34 H 0.96994 * 120.00395 * 264.99795 * 4 2 1 35 35 H 0.97002 * 120.00270 * 179.97438 * 8 7 5 36 36 H 1.07997 * 120.00125 * 359.97438 * 14 13 2 37 37 H 1.08003 * 119.99704 * 179.97438 * 15 14 13 38 38 H 1.08994 * 109.47350 * 329.99139 * 17 16 15 39 39 H 1.09004 * 109.46660 * 209.99264 * 17 16 15 40 40 H 0.96997 * 120.00071 * 0.02562 * 18 17 16 41 41 H 1.09005 * 109.66818 * 310.70212 * 23 21 19 42 42 H 1.08995 * 109.67553 * 71.19557 * 23 21 19 43 43 H 1.08997 * 109.60108 * 187.28229 * 24 23 21 44 44 H 1.09003 * 109.60098 * 307.60814 * 24 23 21 45 45 H 1.09000 * 109.29632 * 69.55895 * 25 24 23 46 46 H 1.08999 * 109.29890 * 189.14040 * 25 24 23 47 47 H 0.97000 * 117.96517 * 199.30679 * 26 25 24 48 48 H 1.08004 * 120.00031 * 179.72922 * 29 16 15 49 49 H 1.08001 * 120.00255 * 0.02562 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3758 6 1 1.8919 1.0402 -2.4244 7 6 2.6112 -0.6622 -3.5093 8 7 2.9241 -1.9392 -3.4502 9 14 2.7903 0.2699 -5.1183 10 1 4.1529 0.8540 -5.2030 11 1 2.5791 -0.6611 -6.2557 12 1 1.7810 1.3577 -5.1751 13 6 2.0324 -0.7104 1.2304 14 6 2.4588 0.0195 2.3243 15 6 2.9201 -0.6322 3.4527 16 6 2.9546 -2.0137 3.4876 17 6 3.4580 -2.7240 4.7176 18 7 2.3393 -2.9731 5.6301 19 6 2.5534 -3.6016 6.8030 20 8 3.6722 -3.9604 7.1032 21 6 1.4024 -3.8584 7.7413 22 1 0.9494 -2.9084 8.0251 23 6 1.9173 -4.5706 8.9945 24 6 0.7106 -5.0651 9.8012 25 6 0.0109 -6.1698 9.0082 26 7 -0.2533 -5.7276 7.6445 27 6 0.3781 -4.7133 7.0521 28 8 0.1069 -4.4649 5.8963 29 6 2.5325 -2.7434 2.3921 30 6 2.0671 -2.0919 1.2652 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 3.2467 -2.3967 -4.2424 36 1 2.4322 1.0987 2.2969 37 1 3.2536 -0.0620 4.3072 38 1 4.2024 -2.1035 5.2164 39 1 3.9102 -3.6731 4.4295 40 1 1.4443 -2.6865 5.3897 41 1 2.5380 -5.4188 8.7056 42 1 2.5025 -3.8760 9.5971 43 1 1.0483 -5.4605 10.7591 44 1 0.0198 -4.2389 9.9696 45 1 0.6458 -7.0555 8.9872 46 1 -0.9350 -6.4158 9.4908 47 1 -0.9277 -6.2032 7.1347 48 1 2.5635 -3.8227 2.4177 49 1 1.7346 -2.6621 0.4103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272690549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:10 Heat of formation + Delta-G solvation = -45.893916 kcal Electronic energy + Delta-G solvation = -29409.920809 eV Core-core repulsion = 25336.395398 eV Total energy + Delta-G solvation = -4073.525411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.27414 -39.54902 -38.89217 -37.01597 -35.91062 -34.44432 -33.55874 -32.28539 -30.77522 -30.59526 -29.94060 -28.29309 -26.39628 -24.92210 -23.80883 -23.25380 -22.51084 -21.64797 -21.05293 -19.74045 -19.51745 -18.04305 -17.50972 -17.35772 -16.92300 -16.22247 -15.74160 -15.40756 -15.30761 -14.93205 -14.70653 -14.61779 -14.34941 -14.06585 -14.00705 -13.78806 -13.33726 -13.29530 -13.00631 -12.95327 -12.54667 -12.30743 -12.26673 -11.99601 -11.85757 -11.84790 -11.55108 -11.46023 -11.18118 -10.86147 -10.82070 -10.57749 -10.31783 -10.24676 -10.09497 -9.95762 -9.65194 -9.58721 -9.13670 -8.95065 -8.55603 -8.24479 -6.96812 -5.75893 -3.04639 1.54295 1.77025 2.01775 2.35151 2.85714 3.14419 3.44567 3.49440 3.51205 3.97610 4.07289 4.14412 4.18206 4.27441 4.60381 4.65509 4.73327 4.76345 4.83516 5.03704 5.06324 5.18151 5.27411 5.29328 5.37651 5.43871 5.46558 5.59488 5.67116 5.70355 5.77791 5.85045 6.03326 6.07552 6.24517 6.30814 6.31918 6.37645 6.41803 6.55165 6.67459 6.75738 6.78236 6.85564 7.00199 7.21857 7.34785 7.40319 7.70140 7.70855 8.03297 8.42384 9.53621 10.09827 10.45095 11.46757 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.001886 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.452862 B =14839.608765 C =15111.588495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.204 3.796 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.054 4.054 14 C -0.123 4.123 15 C -0.103 4.103 16 C -0.129 4.129 17 C 0.166 3.834 18 N -0.705 5.705 19 C 0.527 3.473 20 O -0.540 6.540 21 C -0.127 4.127 22 H 0.130 0.870 23 C -0.105 4.105 24 C -0.138 4.138 25 C 0.107 3.893 26 N -0.716 5.716 27 C 0.527 3.473 28 O -0.538 6.538 29 C -0.094 4.094 30 C -0.105 4.105 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.411 0.589 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.404 0.596 48 H 0.118 0.882 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -6.102 30.955 32.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.073 0.927 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.055 4.055 14 C -0.141 4.141 15 C -0.122 4.122 16 C -0.129 4.129 17 C 0.043 3.957 18 N -0.357 5.357 19 C 0.311 3.689 20 O -0.418 6.418 21 C -0.151 4.151 22 H 0.148 0.852 23 C -0.143 4.143 24 C -0.176 4.176 25 C -0.018 4.018 26 N -0.369 5.369 27 C 0.313 3.687 28 O -0.415 6.415 29 C -0.113 4.113 30 C -0.124 4.124 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.248 0.752 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.240 0.760 48 H 0.136 0.864 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.570 -5.983 30.516 31.592 hybrid contribution -0.541 0.039 -1.210 1.326 sum -6.111 -5.944 29.307 30.521 Atomic orbital electron populations 1.22418 0.98259 1.01178 1.00084 1.19244 0.92128 0.94962 0.84234 0.92652 1.42530 1.78197 1.10732 1.04920 1.19243 1.36628 0.93974 0.87142 0.91077 1.24748 1.02102 0.96003 0.98106 1.69660 1.50792 1.08645 1.28927 0.86181 0.77783 0.78576 0.83596 1.21737 1.21797 1.20758 1.20515 0.95341 0.94043 0.95597 1.20990 1.00213 0.99705 0.93204 1.20898 0.99797 0.93451 0.98007 1.19615 1.04108 0.93821 0.95395 1.20172 0.88288 0.99867 0.87343 1.46181 1.12788 1.58539 1.18151 1.19779 0.89072 0.78051 0.81985 1.90715 1.24028 1.51769 1.75276 1.21481 0.95166 1.01573 0.96899 0.85213 1.21521 0.97540 1.01611 0.93669 1.21932 0.97581 0.98770 0.99337 1.21474 1.01157 0.97568 0.81563 1.45372 1.41770 1.33856 1.15866 1.19583 0.81682 0.80862 0.86623 1.90819 1.64466 1.69352 1.16834 1.21016 0.97833 0.99522 0.92907 1.21077 0.99104 0.94419 0.97769 0.93302 0.94342 0.92427 0.77975 0.93481 0.86175 0.86542 0.90770 0.90858 0.75178 0.89800 0.89671 0.89092 0.90680 0.91213 0.90195 0.75990 0.86386 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.47 37.16 0.35 -2.61 16 2 C 0.20 4.17 3.09 -69.08 -0.21 3.96 16 3 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 4 N -0.72 -18.29 5.07 -54.55 -0.28 -18.57 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 9 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C -0.05 -0.97 4.95 -104.62 -0.52 -1.49 16 14 C -0.12 -1.89 9.67 -39.58 -0.38 -2.28 16 15 C -0.10 -1.41 9.70 -39.58 -0.38 -1.79 16 16 C -0.13 -1.81 5.25 -104.63 -0.55 -2.36 16 17 C 0.17 2.10 5.80 -5.19 -0.03 2.07 16 18 N -0.70 -8.35 5.03 -61.47 -0.31 -8.66 16 19 C 0.53 6.15 7.06 -10.98 -0.08 6.07 16 20 O -0.54 -7.82 15.79 5.56 0.09 -7.73 16 21 C -0.13 -1.01 2.78 -93.14 -0.26 -1.27 16 22 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 23 C -0.11 -0.63 4.78 -26.52 -0.13 -0.75 16 24 C -0.14 -0.41 6.02 -26.59 -0.16 -0.57 16 25 C 0.11 0.33 7.17 -4.47 -0.03 0.30 16 26 N -0.72 -4.40 5.45 -61.37 -0.33 -4.73 16 27 C 0.53 4.87 7.28 -11.87 -0.09 4.79 16 28 O -0.54 -7.00 15.56 5.55 0.09 -6.91 16 29 C -0.09 -1.48 9.70 -39.58 -0.38 -1.86 16 30 C -0.11 -1.89 9.06 -39.58 -0.36 -2.25 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.39 10.31 6.06 -40.82 -0.25 10.06 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.12 1.64 8.04 -52.49 -0.42 1.22 16 37 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.41 4.83 7.13 -40.82 -0.29 4.54 16 41 H 0.08 0.63 7.72 -51.93 -0.40 0.23 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 44 H 0.07 0.19 8.12 -51.93 -0.42 -0.23 16 45 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 47 H 0.40 2.21 8.80 -40.82 -0.36 1.85 16 48 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 49 H 0.13 2.46 6.91 -52.49 -0.36 2.09 16 LS Contribution 402.34 15.07 6.06 6.06 Total: -1.00 -34.84 402.34 -9.97 -44.81 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -7.53 Total: 13.20 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.46 Total: -7.36 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.20 Total: -59.61 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.17 Total: -14.65 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.84 -9.97 -44.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272690549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.089 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds