Wall clock time and date at job start Wed Apr 1 2020 03:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47048 * 2 1 4 4 N 1.46501 * 109.46786 * 239.99680 * 2 1 3 5 5 C 1.36941 * 119.99796 * 85.00274 * 4 2 1 6 6 H 1.07994 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99652 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00514 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99661 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47349 * 89.99732 * 9 7 5 11 11 H 1.48501 * 109.46865 * 209.99636 * 9 7 5 12 12 H 1.48494 * 109.46814 * 329.99431 * 9 7 5 13 13 C 1.50700 * 109.47291 * 120.00223 * 2 1 3 14 14 C 1.38241 * 119.99638 * 260.00133 * 13 2 1 15 15 C 1.38238 * 119.99733 * 180.02562 * 14 13 2 16 16 C 1.38231 * 120.00150 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99902 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47387 * 89.99510 * 17 16 15 19 19 C 1.34778 * 119.99863 * 179.97438 * 18 17 16 20 20 O 1.21273 * 119.99983 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99859 * 180.02562 * 19 18 17 22 22 H 1.09005 * 109.32697 * 300.22133 * 21 19 18 23 23 C 1.53064 * 109.40253 * 180.43509 * 21 19 18 24 24 C 1.53342 * 108.42647 * 190.97127 * 23 21 19 25 25 C 1.52927 * 108.67424 * 67.52740 * 24 23 21 26 26 N 1.45768 * 110.42123 * 309.02798 * 25 24 23 27 27 C 1.33356 * 124.09246 * 19.58391 * 26 25 24 28 28 O 1.21283 * 118.24896 * 177.48435 * 27 26 25 29 29 C 1.38231 * 119.99921 * 0.24743 * 16 15 14 30 30 C 1.38232 * 120.00150 * 80.01517 * 13 2 1 31 31 H 1.09003 * 109.47095 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46922 * 300.00167 * 1 2 3 33 33 H 1.08997 * 109.47366 * 60.00416 * 1 2 3 34 34 H 0.96994 * 120.00395 * 264.99795 * 4 2 1 35 35 H 0.97002 * 120.00270 * 179.97438 * 8 7 5 36 36 H 1.07997 * 120.00125 * 359.97438 * 14 13 2 37 37 H 1.08003 * 119.99704 * 179.97438 * 15 14 13 38 38 H 1.08994 * 109.47350 * 329.99139 * 17 16 15 39 39 H 1.09004 * 109.46660 * 209.99264 * 17 16 15 40 40 H 0.96997 * 120.00071 * 0.02562 * 18 17 16 41 41 H 1.09005 * 109.66818 * 310.70212 * 23 21 19 42 42 H 1.08995 * 109.67553 * 71.19557 * 23 21 19 43 43 H 1.08997 * 109.60108 * 187.28229 * 24 23 21 44 44 H 1.09003 * 109.60098 * 307.60814 * 24 23 21 45 45 H 1.09000 * 109.29632 * 69.55895 * 25 24 23 46 46 H 1.08999 * 109.29890 * 189.14040 * 25 24 23 47 47 H 0.97000 * 117.96517 * 199.30679 * 26 25 24 48 48 H 1.08004 * 120.00031 * 179.72922 * 29 16 15 49 49 H 1.08001 * 120.00255 * 0.02562 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3758 6 1 1.8919 1.0402 -2.4244 7 6 2.6112 -0.6622 -3.5093 8 7 2.9241 -1.9392 -3.4502 9 14 2.7903 0.2699 -5.1183 10 1 4.1529 0.8540 -5.2030 11 1 2.5791 -0.6611 -6.2557 12 1 1.7810 1.3577 -5.1751 13 6 2.0324 -0.7104 1.2304 14 6 2.4588 0.0195 2.3243 15 6 2.9201 -0.6322 3.4527 16 6 2.9546 -2.0137 3.4876 17 6 3.4580 -2.7240 4.7176 18 7 2.3393 -2.9731 5.6301 19 6 2.5534 -3.6016 6.8030 20 8 3.6722 -3.9604 7.1032 21 6 1.4024 -3.8584 7.7413 22 1 0.9494 -2.9084 8.0251 23 6 1.9173 -4.5706 8.9945 24 6 0.7106 -5.0651 9.8012 25 6 0.0109 -6.1698 9.0082 26 7 -0.2533 -5.7276 7.6445 27 6 0.3781 -4.7133 7.0521 28 8 0.1069 -4.4649 5.8963 29 6 2.5325 -2.7434 2.3921 30 6 2.0671 -2.0919 1.2652 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 3.2467 -2.3967 -4.2424 36 1 2.4322 1.0987 2.2969 37 1 3.2536 -0.0620 4.3072 38 1 4.2024 -2.1035 5.2164 39 1 3.9102 -3.6731 4.4295 40 1 1.4443 -2.6865 5.3897 41 1 2.5380 -5.4188 8.7056 42 1 2.5025 -3.8760 9.5971 43 1 1.0483 -5.4605 10.7591 44 1 0.0198 -4.2389 9.9696 45 1 0.6458 -7.0555 8.9872 46 1 -0.9350 -6.4158 9.4908 47 1 -0.9277 -6.2032 7.1347 48 1 2.5635 -3.8227 2.4177 49 1 1.7346 -2.6621 0.4103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272690549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:08 Heat of formation + Delta-G solvation = -70.263778 kcal Electronic energy + Delta-G solvation = -29410.977565 eV Core-core repulsion = 25336.395398 eV Total energy + Delta-G solvation = -4074.582168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.98681 -40.68589 -39.90373 -37.66945 -37.34546 -35.72821 -34.24076 -33.98551 -31.99582 -31.75754 -30.86731 -29.96961 -27.40249 -26.00804 -25.40612 -23.84038 -23.76054 -22.98301 -21.89527 -21.12311 -20.14024 -19.40041 -18.74899 -18.16359 -17.62645 -17.34540 -16.92739 -16.68547 -16.34942 -16.03784 -15.76625 -15.66155 -15.23166 -15.14119 -15.05384 -14.74790 -14.62129 -14.45411 -14.34328 -14.23312 -13.85310 -13.51988 -13.43832 -13.01361 -12.96736 -12.79322 -12.72306 -12.50306 -12.39401 -12.24615 -12.14970 -12.03256 -11.93119 -11.61568 -11.54734 -11.16650 -11.00455 -10.85636 -10.13639 -10.08129 -9.80551 -9.55519 -9.03514 -7.94426 -5.23336 0.29715 0.51716 1.25039 1.46344 1.48437 1.56674 1.57226 2.20406 2.35014 2.55710 2.91424 3.39701 3.45103 3.50581 3.64530 3.77660 3.85686 3.87311 3.97127 4.02434 4.13549 4.18066 4.24957 4.33282 4.51503 4.52362 4.58165 4.64736 4.76127 4.76810 4.77804 4.85303 4.99913 5.04725 5.06488 5.09308 5.10874 5.20253 5.31252 5.37577 5.40799 5.49719 5.53940 5.62084 5.75818 5.81936 6.08483 6.21392 6.27430 6.46794 7.06278 7.13995 7.33206 8.08087 8.32147 9.29284 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.001886 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.452862 B =14839.608765 C =15111.588495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.200 3.800 3 H 0.058 0.942 4 N -0.736 5.736 5 C -0.238 4.238 6 H 0.079 0.921 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.974 3.026 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.267 1.267 13 C -0.074 4.074 14 C -0.120 4.120 15 C -0.092 4.092 16 C -0.116 4.116 17 C 0.170 3.830 18 N -0.703 5.703 19 C 0.523 3.477 20 O -0.572 6.572 21 C -0.121 4.121 22 H 0.156 0.844 23 C -0.103 4.103 24 C -0.131 4.131 25 C 0.099 3.901 26 N -0.707 5.707 27 C 0.522 3.478 28 O -0.585 6.585 29 C -0.101 4.101 30 C -0.124 4.124 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.373 0.627 35 H 0.250 0.750 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.413 0.587 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.407 0.593 48 H 0.121 0.879 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 -4.821 34.145 35.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.092 3.908 3 H 0.076 0.924 4 N -0.377 5.377 5 C -0.369 4.369 6 H 0.097 0.903 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.804 3.196 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.192 1.192 13 C -0.075 4.075 14 C -0.138 4.138 15 C -0.110 4.110 16 C -0.117 4.117 17 C 0.047 3.953 18 N -0.354 5.354 19 C 0.308 3.692 20 O -0.452 6.452 21 C -0.145 4.145 22 H 0.173 0.827 23 C -0.141 4.141 24 C -0.169 4.169 25 C -0.024 4.024 26 N -0.358 5.358 27 C 0.307 3.693 28 O -0.466 6.466 29 C -0.120 4.120 30 C -0.142 4.142 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.206 0.794 35 H 0.059 0.941 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.250 0.750 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.132 0.868 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.126 0.874 47 H 0.243 0.757 48 H 0.139 0.861 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.274 -4.688 33.781 34.677 hybrid contribution -0.355 -0.408 -2.022 2.093 sum -6.629 -5.095 31.760 32.842 Atomic orbital electron populations 1.22256 0.96801 1.00770 1.01001 1.19424 0.93033 0.94753 0.83627 0.92406 1.42750 1.78486 1.10431 1.06020 1.19659 1.34829 0.94342 0.88112 0.90298 1.25589 1.03033 0.96925 1.01597 1.69832 1.52719 1.10302 1.29399 0.85119 0.77881 0.77421 0.79226 1.21513 1.22412 1.19211 1.20347 0.97385 0.93972 0.95810 1.21223 0.99219 1.00778 0.92586 1.21235 0.98140 0.93247 0.98378 1.19759 1.02599 0.94259 0.95079 1.20084 0.88775 0.99406 0.87033 1.46172 1.12507 1.58580 1.18183 1.20395 0.89677 0.77034 0.82044 1.90696 1.25612 1.52919 1.75972 1.21524 0.93563 1.02887 0.96485 0.82700 1.21541 0.98688 1.00834 0.93078 1.21952 0.96301 0.99021 0.99588 1.21780 1.02862 0.97776 0.79966 1.45457 1.40746 1.32518 1.17055 1.19817 0.81848 0.81438 0.86153 1.90798 1.66136 1.70910 1.18796 1.21078 0.98057 0.99916 0.92931 1.20935 1.00748 0.94678 0.97871 0.94383 0.91074 0.93698 0.79359 0.94136 0.83939 0.83020 0.89538 0.91965 0.74973 0.91806 0.89115 0.86811 0.89558 0.90694 0.87390 0.75688 0.86088 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.47 71.98 0.68 -4.81 16 2 C 0.20 8.20 3.09 44.25 0.14 8.33 16 3 H 0.06 2.33 7.94 -2.39 -0.02 2.31 16 4 N -0.74 -38.38 5.07 -326.51 -1.66 -40.03 16 5 C -0.24 -13.45 9.93 84.03 0.83 -12.61 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 7 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 8 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 9 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 10 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 13 C -0.07 -2.68 4.95 -19.87 -0.10 -2.78 16 14 C -0.12 -3.46 9.67 22.27 0.22 -3.24 16 15 C -0.09 -2.27 9.70 22.27 0.22 -2.06 16 16 C -0.12 -3.14 5.25 -19.87 -0.10 -3.24 16 17 C 0.17 4.13 5.80 85.63 0.50 4.62 16 18 N -0.70 -16.05 5.03 -466.79 -2.35 -18.40 16 19 C 0.52 11.77 7.06 87.66 0.62 12.39 16 20 O -0.57 -16.33 15.79 -3.01 -0.05 -16.38 16 21 C -0.12 -1.74 2.78 -12.43 -0.03 -1.78 16 22 H 0.16 1.41 8.14 -2.38 -0.02 1.39 16 23 C -0.10 -1.03 4.78 30.73 0.15 -0.88 16 24 C -0.13 -0.35 6.02 30.68 0.18 -0.17 16 25 C 0.10 0.34 7.17 86.49 0.62 0.96 16 26 N -0.71 -7.55 5.45 -467.27 -2.55 -10.09 16 27 C 0.52 9.15 7.28 87.71 0.64 9.79 16 28 O -0.59 -15.26 15.56 -3.04 -0.05 -15.31 16 29 C -0.10 -3.25 9.70 22.27 0.22 -3.03 16 30 C -0.12 -4.63 9.06 22.27 0.20 -4.42 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.37 21.00 6.06 -92.71 -0.56 20.44 16 35 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.14 3.44 8.04 -2.91 -0.02 3.42 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 38 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 39 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 40 H 0.41 9.35 7.13 -92.71 -0.66 8.69 16 41 H 0.06 0.91 7.72 -2.38 -0.02 0.89 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.11 -0.14 8.14 -2.39 -0.02 -0.15 16 44 H 0.09 0.10 8.12 -2.39 -0.02 0.08 16 45 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.41 3.97 8.80 -92.71 -0.82 3.16 16 48 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 49 H 0.10 4.25 6.91 -2.91 -0.02 4.23 16 Total: -1.00 -78.16 402.34 0.05 -78.11 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -1.05 Total: 40.97 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.44 Total: -7.14 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -6.27 Total: -129.40 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.09 Total: -31.69 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -78.16 0.05 -78.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272690549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.846 kcal (2) G-P(sol) polarization free energy of solvation -78.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds