Wall clock time and date at job start Wed Apr 1 2020 03:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.36929 * 119.99833 * 84.99952 * 4 2 1 6 6 H 1.08000 * 120.00309 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99926 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99705 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00172 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46980 * 60.00329 * 9 7 5 11 11 H 1.48506 * 109.47241 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47571 * 300.00284 * 9 7 5 13 13 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 14 14 C 1.38237 * 119.99761 * 79.72442 * 13 2 1 15 15 C 1.38234 * 119.99833 * 179.76559 * 14 13 2 16 16 C 1.38246 * 119.99760 * 0.48929 * 15 14 13 17 17 C 1.50695 * 119.99799 * 179.76720 * 16 15 14 18 18 N 1.46498 * 109.47230 * 270.02255 * 17 16 15 19 19 C 1.34778 * 120.00336 * 180.02562 * 18 17 16 20 20 O 1.21286 * 119.99767 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00358 * 179.97438 * 19 18 17 22 22 H 1.09005 * 109.39704 * 60.17627 * 21 19 18 23 23 C 1.53070 * 109.40406 * 180.02562 * 21 19 18 24 24 C 1.53340 * 108.42898 * 169.03136 * 23 21 19 25 25 C 1.52915 * 108.67260 * 292.47271 * 24 23 21 26 26 N 1.45748 * 110.49221 * 50.74874 * 25 24 23 27 27 C 1.33353 * 124.10915 * 340.92687 * 26 25 24 28 28 O 1.21279 * 118.24985 * 182.21939 * 27 26 25 29 29 C 1.38231 * 119.99678 * 359.78971 * 16 15 14 30 30 C 1.38228 * 120.00691 * 359.95283 * 29 16 15 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 34 34 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 35 35 H 0.97006 * 119.99630 * 180.02562 * 8 7 5 36 36 H 1.07999 * 120.00184 * 0.02562 * 14 13 2 37 37 H 1.07996 * 120.00409 * 180.25648 * 15 14 13 38 38 H 1.09005 * 109.47398 * 30.01920 * 17 16 15 39 39 H 1.09005 * 109.47259 * 150.02105 * 17 16 15 40 40 H 0.97002 * 120.00150 * 359.97438 * 18 17 16 41 41 H 1.09003 * 109.66994 * 288.76780 * 23 21 19 42 42 H 1.08999 * 109.67346 * 49.25773 * 23 21 19 43 43 H 1.09009 * 109.59986 * 52.22466 * 24 23 21 44 44 H 1.08996 * 109.60709 * 172.54810 * 24 23 21 45 45 H 1.09007 * 109.30046 * 171.06282 * 25 24 23 46 46 H 1.09007 * 109.29918 * 290.64322 * 25 24 23 47 47 H 0.97001 * 117.95147 * 160.92587 * 26 25 24 48 48 H 1.08010 * 119.99477 * 179.97438 * 29 16 15 49 49 H 1.07997 * 120.00201 * 180.02562 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6125 -0.6618 -3.5089 8 7 2.9256 -1.9388 -3.4498 9 14 2.7903 0.2699 -5.1182 10 1 3.7447 1.3931 -4.9371 11 1 3.2994 -0.6485 -6.1683 12 1 1.4676 0.8056 -5.5288 13 6 2.0323 -0.7104 1.2305 14 6 2.0613 -2.0920 1.2675 15 6 2.5266 -2.7436 2.3943 16 6 2.9534 -2.0137 3.4881 17 6 3.4557 -2.7241 4.7185 18 7 2.3361 -2.9733 5.6298 19 6 2.5491 -3.6009 6.8033 20 8 3.6680 -3.9589 7.1052 21 6 1.3975 -3.8568 7.7410 22 1 0.6557 -4.4802 7.2416 23 6 1.9096 -4.5774 8.9906 24 6 0.7916 -4.5817 10.0401 25 6 0.5562 -3.1459 10.5105 26 7 0.3794 -2.2574 9.3688 27 6 0.7684 -2.5489 8.1271 28 8 0.6055 -1.7133 7.2633 29 6 2.9189 -0.6322 3.4531 30 6 2.4587 0.0195 2.3243 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 3.2497 -2.3959 -4.2416 36 1 1.7244 -2.6622 0.4144 37 1 2.5532 -3.8229 2.4218 38 1 3.9082 -3.6731 4.4309 39 1 4.1997 -2.1035 5.2181 40 1 1.4415 -2.6860 5.3889 41 1 2.1799 -5.6027 8.7381 42 1 2.7812 -4.0546 9.3844 43 1 -0.1234 -4.9764 9.5980 44 1 1.0864 -5.2026 10.8860 45 1 -0.3371 -3.1130 11.1344 46 1 1.4149 -2.8123 11.0932 47 1 -0.0481 -1.4002 9.5217 48 1 3.2520 -0.0620 4.3078 49 1 2.4322 1.0988 2.2970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272690551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:14 Heat of formation + Delta-G solvation = -45.974588 kcal Electronic energy + Delta-G solvation = -29381.929512 eV Core-core repulsion = 25308.400603 eV Total energy + Delta-G solvation = -4073.528909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.28826 -39.55161 -38.89390 -37.03403 -35.91062 -34.44343 -33.57001 -32.28665 -30.78061 -30.59799 -29.94349 -28.29428 -26.39940 -24.92764 -23.80684 -23.26968 -22.51649 -21.64174 -21.05627 -19.75036 -19.51523 -18.05237 -17.52287 -17.35833 -16.95322 -16.18966 -15.74878 -15.48751 -15.26523 -14.90047 -14.74552 -14.63076 -14.35194 -14.08040 -13.98109 -13.81093 -13.33006 -13.30405 -13.00664 -12.94981 -12.55362 -12.31827 -12.25398 -12.00340 -11.87026 -11.84825 -11.55509 -11.46041 -11.18206 -10.86409 -10.80701 -10.57463 -10.32955 -10.27024 -10.10354 -9.97066 -9.64995 -9.60899 -9.13552 -8.94768 -8.55672 -8.24266 -6.97170 -5.76180 -3.04786 1.54238 1.77346 2.00357 2.34167 2.83847 3.14420 3.44982 3.49240 3.50230 3.96619 4.06928 4.13894 4.17325 4.27026 4.60310 4.65085 4.73536 4.75547 4.83521 5.02773 5.06844 5.17335 5.26943 5.30361 5.37933 5.44102 5.45944 5.58933 5.66918 5.69923 5.78256 5.84663 6.03237 6.07819 6.22279 6.30630 6.32018 6.37494 6.41912 6.55469 6.67398 6.73425 6.79248 6.84433 6.99453 7.21803 7.34744 7.40331 7.67849 7.70278 8.03362 8.42212 9.53397 10.09473 10.44942 11.46429 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.001855 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.953531 B =15089.727652 C =15586.920437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.204 3.796 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.054 4.054 14 C -0.107 4.107 15 C -0.099 4.099 16 C -0.129 4.129 17 C 0.166 3.834 18 N -0.705 5.705 19 C 0.527 3.473 20 O -0.540 6.540 21 C -0.127 4.127 22 H 0.131 0.869 23 C -0.105 4.105 24 C -0.139 4.139 25 C 0.107 3.893 26 N -0.716 5.716 27 C 0.528 3.472 28 O -0.539 6.539 29 C -0.098 4.098 30 C -0.121 4.121 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.411 0.589 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.404 0.596 48 H 0.116 0.884 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 -5.329 31.341 32.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.363 5.363 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.055 4.055 14 C -0.125 4.125 15 C -0.118 4.118 16 C -0.129 4.129 17 C 0.043 3.957 18 N -0.357 5.357 19 C 0.311 3.689 20 O -0.418 6.418 21 C -0.152 4.152 22 H 0.148 0.852 23 C -0.143 4.143 24 C -0.176 4.176 25 C -0.018 4.018 26 N -0.368 5.368 27 C 0.313 3.687 28 O -0.416 6.416 29 C -0.116 4.116 30 C -0.140 4.140 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.249 0.751 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.240 0.760 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.413 -5.253 30.884 31.792 hybrid contribution -0.463 0.574 -0.949 1.202 sum -5.876 -4.679 29.935 30.863 Atomic orbital electron populations 1.22415 0.98254 1.01136 1.00121 1.19249 0.92125 0.94996 0.84223 0.92648 1.42514 1.78215 1.10712 1.04902 1.19201 1.36686 0.93981 0.87169 0.91136 1.24743 1.02072 0.96021 0.98094 1.69653 1.50725 1.08663 1.29037 0.86255 0.77766 0.78595 0.83481 1.21273 1.21707 1.21278 1.20512 0.95325 0.94061 0.95574 1.21062 0.99299 0.94418 0.97730 1.20997 0.98363 0.99401 0.93036 1.19618 1.04099 0.93883 0.95340 1.20171 0.88363 0.99842 0.87296 1.46189 1.12994 1.58178 1.18302 1.19774 0.89070 0.78091 0.81945 1.90719 1.23824 1.51975 1.75280 1.21487 0.98705 0.96439 0.98526 0.85153 1.21521 0.98465 1.02010 0.92337 1.21931 0.99709 0.95837 1.00165 1.21470 1.02307 0.90219 0.87766 1.45366 1.61833 1.21853 1.07794 1.19588 0.78022 0.88508 0.82552 1.90805 1.55336 1.48025 1.47440 1.20915 0.99307 0.93547 0.97853 1.21002 1.00070 0.99766 0.93151 0.93334 0.94301 0.92434 0.77989 0.93443 0.85427 0.86376 0.90676 0.90951 0.75149 0.89626 0.89822 0.90671 0.89046 0.90154 0.91278 0.76039 0.86554 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.47 37.16 0.35 -2.60 16 2 C 0.20 4.17 3.09 -69.08 -0.21 3.95 16 3 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 4 N -0.72 -18.20 5.07 -54.55 -0.28 -18.48 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 9 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 C -0.05 -0.97 4.95 -104.62 -0.52 -1.49 16 14 C -0.11 -1.87 9.05 -39.58 -0.36 -2.23 16 15 C -0.10 -1.49 9.70 -39.58 -0.38 -1.87 16 16 C -0.13 -1.81 5.25 -104.62 -0.55 -2.36 16 17 C 0.17 2.10 5.80 -5.20 -0.03 2.07 16 18 N -0.70 -8.36 5.03 -61.47 -0.31 -8.67 16 19 C 0.53 6.15 7.06 -10.99 -0.08 6.07 16 20 O -0.54 -7.82 15.79 5.55 0.09 -7.73 16 21 C -0.13 -1.02 2.78 -93.14 -0.26 -1.28 16 22 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.11 -0.63 4.78 -26.52 -0.13 -0.75 16 24 C -0.14 -0.41 6.02 -26.60 -0.16 -0.57 16 25 C 0.11 0.31 7.17 -4.49 -0.03 0.28 16 26 N -0.72 -4.16 5.45 -61.39 -0.33 -4.50 16 27 C 0.53 4.74 7.28 -11.87 -0.09 4.65 16 28 O -0.54 -6.77 15.53 5.56 0.09 -6.69 16 29 C -0.10 -1.41 9.70 -39.59 -0.38 -1.79 16 30 C -0.12 -1.93 9.67 -39.59 -0.38 -2.31 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.38 10.22 6.08 -40.82 -0.25 9.97 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.13 2.37 6.93 -52.49 -0.36 2.01 16 37 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 39 H 0.07 0.93 8.09 -51.93 -0.42 0.52 16 40 H 0.41 4.85 7.09 -40.82 -0.29 4.56 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.62 7.73 -51.93 -0.40 0.22 16 43 H 0.07 0.20 8.12 -51.92 -0.42 -0.23 16 44 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.08 0.08 8.14 -51.92 -0.42 -0.34 16 46 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 47 H 0.40 2.03 8.80 -40.82 -0.36 1.67 16 48 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 49 H 0.12 1.72 8.04 -52.49 -0.42 1.30 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -34.59 402.31 -9.97 -44.56 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.53 Total: 12.98 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.46 Total: -7.52 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.20 Total: -59.15 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.17 Total: -14.42 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.59 -9.97 -44.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272690551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.416 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds