Wall clock time and date at job start Wed Apr 1 2020 03:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.36929 * 119.99833 * 84.99952 * 4 2 1 6 6 H 1.08000 * 120.00309 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99926 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99705 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00172 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46980 * 60.00329 * 9 7 5 11 11 H 1.48506 * 109.47241 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47571 * 300.00284 * 9 7 5 13 13 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 14 14 C 1.38237 * 119.99761 * 79.72442 * 13 2 1 15 15 C 1.38234 * 119.99833 * 179.76559 * 14 13 2 16 16 C 1.38246 * 119.99760 * 0.48929 * 15 14 13 17 17 C 1.50695 * 119.99799 * 179.76720 * 16 15 14 18 18 N 1.46498 * 109.47230 * 270.02255 * 17 16 15 19 19 C 1.34778 * 120.00336 * 180.02562 * 18 17 16 20 20 O 1.21286 * 119.99767 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00358 * 179.97438 * 19 18 17 22 22 H 1.09005 * 109.39704 * 60.17627 * 21 19 18 23 23 C 1.53070 * 109.40406 * 180.02562 * 21 19 18 24 24 C 1.53340 * 108.42898 * 169.03136 * 23 21 19 25 25 C 1.52915 * 108.67260 * 292.47271 * 24 23 21 26 26 N 1.45748 * 110.49221 * 50.74874 * 25 24 23 27 27 C 1.33353 * 124.10915 * 340.92687 * 26 25 24 28 28 O 1.21279 * 118.24985 * 182.21939 * 27 26 25 29 29 C 1.38231 * 119.99678 * 359.78971 * 16 15 14 30 30 C 1.38228 * 120.00691 * 359.95283 * 29 16 15 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 34 34 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 35 35 H 0.97006 * 119.99630 * 180.02562 * 8 7 5 36 36 H 1.07999 * 120.00184 * 0.02562 * 14 13 2 37 37 H 1.07996 * 120.00409 * 180.25648 * 15 14 13 38 38 H 1.09005 * 109.47398 * 30.01920 * 17 16 15 39 39 H 1.09005 * 109.47259 * 150.02105 * 17 16 15 40 40 H 0.97002 * 120.00150 * 359.97438 * 18 17 16 41 41 H 1.09003 * 109.66994 * 288.76780 * 23 21 19 42 42 H 1.08999 * 109.67346 * 49.25773 * 23 21 19 43 43 H 1.09009 * 109.59986 * 52.22466 * 24 23 21 44 44 H 1.08996 * 109.60709 * 172.54810 * 24 23 21 45 45 H 1.09007 * 109.30046 * 171.06282 * 25 24 23 46 46 H 1.09007 * 109.29918 * 290.64322 * 25 24 23 47 47 H 0.97001 * 117.95147 * 160.92587 * 26 25 24 48 48 H 1.08010 * 119.99477 * 179.97438 * 29 16 15 49 49 H 1.07997 * 120.00201 * 180.02562 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6125 -0.6618 -3.5089 8 7 2.9256 -1.9388 -3.4498 9 14 2.7903 0.2699 -5.1182 10 1 3.7447 1.3931 -4.9371 11 1 3.2994 -0.6485 -6.1683 12 1 1.4676 0.8056 -5.5288 13 6 2.0323 -0.7104 1.2305 14 6 2.0613 -2.0920 1.2675 15 6 2.5266 -2.7436 2.3943 16 6 2.9534 -2.0137 3.4881 17 6 3.4557 -2.7241 4.7185 18 7 2.3361 -2.9733 5.6298 19 6 2.5491 -3.6009 6.8033 20 8 3.6680 -3.9589 7.1052 21 6 1.3975 -3.8568 7.7410 22 1 0.6557 -4.4802 7.2416 23 6 1.9096 -4.5774 8.9906 24 6 0.7916 -4.5817 10.0401 25 6 0.5562 -3.1459 10.5105 26 7 0.3794 -2.2574 9.3688 27 6 0.7684 -2.5489 8.1271 28 8 0.6055 -1.7133 7.2633 29 6 2.9189 -0.6322 3.4531 30 6 2.4587 0.0195 2.3243 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 3.2497 -2.3959 -4.2416 36 1 1.7244 -2.6622 0.4144 37 1 2.5532 -3.8229 2.4218 38 1 3.9082 -3.6731 4.4309 39 1 4.1997 -2.1035 5.2181 40 1 1.4415 -2.6860 5.3889 41 1 2.1799 -5.6027 8.7381 42 1 2.7812 -4.0546 9.3844 43 1 -0.1234 -4.9764 9.5980 44 1 1.0864 -5.2026 10.8860 45 1 -0.3371 -3.1130 11.1344 46 1 1.4149 -2.8123 11.0932 47 1 -0.0481 -1.4002 9.5217 48 1 3.2520 -0.0620 4.3078 49 1 2.4322 1.0988 2.2970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272690551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:12 Heat of formation + Delta-G solvation = -69.871320 kcal Electronic energy + Delta-G solvation = -29382.965752 eV Core-core repulsion = 25308.400603 eV Total energy + Delta-G solvation = -4074.565149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.98521 -40.68629 -39.89999 -37.66573 -37.34163 -35.72663 -34.23864 -33.98248 -31.99961 -31.75273 -30.86405 -29.96632 -27.40172 -26.00235 -25.40299 -23.84983 -23.74919 -22.98116 -21.89692 -21.13008 -20.13850 -19.39309 -18.74870 -18.16112 -17.64462 -17.27818 -17.00152 -16.65612 -16.27719 -16.12332 -15.74374 -15.66012 -15.22075 -15.11192 -15.07726 -14.72719 -14.66171 -14.43634 -14.34574 -14.22822 -13.85359 -13.51365 -13.44568 -12.99879 -12.95986 -12.77379 -12.72645 -12.49702 -12.39258 -12.24744 -12.19359 -12.03296 -11.93406 -11.61188 -11.54917 -11.16656 -10.98934 -10.84985 -10.13572 -10.06998 -9.80874 -9.55619 -9.02848 -7.93827 -5.22446 0.29516 0.51482 1.25684 1.46917 1.50059 1.55938 1.57157 2.19828 2.35655 2.56301 2.91301 3.40077 3.44850 3.50832 3.64509 3.77183 3.85212 3.87157 3.97075 4.02976 4.13113 4.18052 4.24746 4.33596 4.51692 4.52439 4.56883 4.64741 4.76039 4.76742 4.77928 4.85357 4.99838 5.05255 5.06524 5.09376 5.10130 5.20693 5.31126 5.37362 5.40302 5.49945 5.54070 5.61470 5.77182 5.81700 6.07906 6.21600 6.28038 6.46727 7.06611 7.14228 7.34164 8.08549 8.33373 9.29517 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.001855 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.953531 B =15089.727652 C =15586.920437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.200 3.800 3 H 0.054 0.946 4 N -0.734 5.734 5 C -0.240 4.240 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.974 3.026 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.277 1.277 13 C -0.074 4.074 14 C -0.122 4.122 15 C -0.098 4.098 16 C -0.116 4.116 17 C 0.170 3.830 18 N -0.703 5.703 19 C 0.523 3.477 20 O -0.572 6.572 21 C -0.123 4.123 22 H 0.152 0.848 23 C -0.103 4.103 24 C -0.132 4.132 25 C 0.100 3.900 26 N -0.706 5.706 27 C 0.524 3.476 28 O -0.583 6.583 29 C -0.095 4.095 30 C -0.122 4.122 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.413 0.587 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.408 0.592 48 H 0.138 0.862 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.096 -5.040 34.037 35.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.092 3.908 3 H 0.072 0.928 4 N -0.375 5.375 5 C -0.372 4.372 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.803 3.197 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.204 1.204 13 C -0.075 4.075 14 C -0.141 4.141 15 C -0.116 4.116 16 C -0.117 4.117 17 C 0.047 3.953 18 N -0.355 5.355 19 C 0.309 3.691 20 O -0.452 6.452 21 C -0.146 4.146 22 H 0.169 0.831 23 C -0.141 4.141 24 C -0.169 4.169 25 C -0.023 4.023 26 N -0.357 5.357 27 C 0.309 3.691 28 O -0.464 6.464 29 C -0.113 4.113 30 C -0.140 4.140 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.154 0.846 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.250 0.750 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.127 0.873 46 H 0.094 0.906 47 H 0.244 0.756 48 H 0.156 0.844 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.277 -4.934 33.660 34.594 hybrid contribution -0.216 0.483 -1.590 1.675 sum -6.492 -4.451 32.070 33.022 Atomic orbital electron populations 1.22249 0.96707 1.00958 1.00871 1.19404 0.93091 0.94637 0.83702 0.92826 1.42706 1.78515 1.10441 1.05879 1.19604 1.35065 0.94328 0.88192 0.90518 1.25561 1.02931 0.96947 1.01482 1.69819 1.52523 1.10213 1.29484 0.85208 0.77957 0.77266 0.79302 1.20495 1.22277 1.20350 1.20333 0.97326 0.94296 0.95512 1.20982 1.00617 0.94383 0.98095 1.21136 0.97693 1.00390 0.92382 1.19756 1.02636 0.93932 0.95364 1.20080 0.88636 0.99755 0.86824 1.46179 1.12715 1.58158 1.18406 1.20389 0.89681 0.77091 0.81971 1.90700 1.25386 1.53236 1.75888 1.21527 0.97718 0.96684 0.98701 0.83055 1.21537 0.98971 1.01436 0.92194 1.21951 0.98803 0.96248 0.99937 1.21764 1.04025 0.89643 0.86880 1.45427 1.60291 1.22422 1.07533 1.19738 0.77929 0.88308 0.83109 1.90780 1.57433 1.49273 1.48914 1.21165 0.98388 0.93831 0.97955 1.21162 0.99520 1.00596 0.92758 0.93976 0.91352 0.93731 0.79208 0.94089 0.87447 0.84640 0.90466 0.91020 0.74952 0.89410 0.91593 0.89754 0.86817 0.87328 0.90601 0.75568 0.84435 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 9.47 71.98 0.68 -4.79 16 2 C 0.20 8.23 3.09 44.25 0.14 8.37 16 3 H 0.05 2.21 7.94 -2.39 -0.02 2.19 16 4 N -0.73 -37.96 5.07 -326.49 -1.66 -39.62 16 5 C -0.24 -13.54 9.93 84.04 0.83 -12.71 16 6 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 7 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 8 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 9 Si 0.97 46.87 29.55 68.60 2.03 48.89 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 C -0.07 -2.67 4.95 -19.86 -0.10 -2.77 16 14 C -0.12 -4.37 9.05 22.27 0.20 -4.17 16 15 C -0.10 -2.89 9.70 22.27 0.22 -2.67 16 16 C -0.12 -3.14 5.25 -19.87 -0.10 -3.24 16 17 C 0.17 4.13 5.80 85.63 0.50 4.63 16 18 N -0.70 -16.08 5.03 -466.78 -2.35 -18.43 16 19 C 0.52 11.81 7.06 87.66 0.62 12.43 16 20 O -0.57 -16.36 15.79 -3.05 -0.05 -16.41 16 21 C -0.12 -1.78 2.78 -12.43 -0.03 -1.82 16 22 H 0.15 1.52 8.14 -2.38 -0.02 1.50 16 23 C -0.10 -1.04 4.78 30.73 0.15 -0.90 16 24 C -0.13 -0.36 6.02 30.68 0.18 -0.17 16 25 C 0.10 0.27 7.17 86.49 0.62 0.89 16 26 N -0.71 -6.75 5.45 -467.32 -2.55 -9.30 16 27 C 0.52 8.70 7.28 87.71 0.64 9.34 16 28 O -0.58 -14.26 15.53 -3.03 -0.05 -14.30 16 29 C -0.09 -2.59 9.70 22.27 0.22 -2.38 16 30 C -0.12 -3.74 9.67 22.27 0.22 -3.52 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.37 20.68 6.08 -92.71 -0.56 20.12 16 35 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 36 H 0.11 4.22 6.93 -2.91 -0.02 4.20 16 37 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.08 1.86 8.09 -2.38 -0.02 1.84 16 39 H 0.07 1.77 8.09 -2.38 -0.02 1.76 16 40 H 0.41 9.39 7.09 -92.71 -0.66 8.73 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.91 7.73 -2.39 -0.02 0.89 16 43 H 0.08 0.13 8.12 -2.38 -0.02 0.11 16 44 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.11 -0.23 8.14 -2.38 -0.02 -0.25 16 46 H 0.08 0.16 8.14 -2.38 -0.02 0.14 16 47 H 0.41 3.35 8.80 -92.71 -0.82 2.54 16 48 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 49 H 0.14 3.66 8.04 -2.91 -0.02 3.64 16 Total: -1.00 -76.26 402.31 0.05 -76.21 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -1.05 Total: 40.46 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 5.44 Total: -7.51 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -6.27 Total: -127.34 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.10 Total: -30.71 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -76.26 0.05 -76.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272690551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.334 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds