Wall clock time and date at job start Wed Apr 1 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47363 * 2 1 4 4 C 1.50701 * 109.47095 * 240.00140 * 2 1 3 5 5 O 1.21286 * 120.00168 * 239.99743 * 4 2 1 6 6 N 1.34776 * 119.99761 * 60.00061 * 4 2 1 7 7 C 1.46501 * 119.99904 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.47492 * 179.97438 * 7 6 4 9 9 C 1.30992 * 120.00115 * 127.15233 * 8 7 6 10 10 C 1.50703 * 120.00476 * 7.56566 * 9 8 7 11 11 N 1.46899 * 109.47389 * 126.99864 * 10 9 8 12 12 C 1.46894 * 110.99914 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47344 * 180.02562 * 12 11 10 14 14 O 1.21291 * 119.99446 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00217 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99982 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00237 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00470 * 180.02562 * 16 15 13 19 19 N 1.31404 * 120.00352 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99396 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46698 * 90.00712 * 20 18 16 22 22 H 1.48501 * 109.46819 * 210.00156 * 20 18 16 23 23 H 1.48494 * 109.47270 * 330.00074 * 20 18 16 24 24 C 1.50703 * 109.47371 * 120.00163 * 2 1 3 25 25 C 1.38233 * 119.99649 * 59.72930 * 24 2 1 26 26 C 1.38238 * 119.99890 * 179.78866 * 25 24 2 27 27 C 1.38241 * 119.99694 * 0.44054 * 26 25 24 28 28 C 1.38234 * 120.00195 * 359.81166 * 27 26 25 29 29 C 1.38232 * 120.00125 * 239.99803 * 24 2 1 30 30 H 1.09003 * 109.47363 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47248 * 59.99909 * 1 2 3 32 32 H 1.09002 * 109.47631 * 299.99503 * 1 2 3 33 33 H 0.96991 * 120.00336 * 359.97438 * 6 4 2 34 34 H 1.09000 * 109.47122 * 300.00182 * 7 6 4 35 35 H 1.09004 * 109.47264 * 59.99810 * 7 6 4 36 36 H 1.08004 * 119.99545 * 307.15879 * 8 7 6 37 37 H 1.08004 * 119.99866 * 187.56209 * 9 8 7 38 38 H 1.09000 * 109.47495 * 247.00675 * 10 9 8 39 39 H 1.09005 * 109.46826 * 7.00140 * 10 9 8 40 40 H 1.00901 * 110.99215 * 56.05328 * 11 10 9 41 41 H 1.09001 * 109.47543 * 300.00429 * 12 11 10 42 42 H 1.09002 * 109.47179 * 60.00388 * 12 11 10 43 43 H 0.97002 * 120.00244 * 359.97438 * 15 13 12 44 44 H 0.96999 * 120.00059 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.00517 * 359.97438 * 25 24 2 46 46 H 1.07994 * 120.00487 * 180.27090 * 26 25 24 47 47 H 1.08000 * 119.99787 * 179.83385 * 27 26 25 48 48 H 1.07997 * 120.00320 * 180.02562 * 28 27 26 49 49 H 1.08000 * 119.99674 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7066 -0.2498 -2.4545 7 6 2.1954 -0.9401 -3.6508 8 6 1.6925 -0.2301 -4.8813 9 6 2.5350 0.1445 -5.8117 10 6 3.9787 -0.2813 -5.7368 11 7 4.3677 -0.9183 -7.0020 12 6 5.7719 -1.3479 -6.9653 13 6 6.1340 -1.9947 -8.2774 14 8 5.3039 -2.0881 -9.1568 15 7 7.3800 -2.4692 -8.4736 16 6 7.7094 -3.0572 -9.6675 17 1 6.9703 -3.1404 -10.4506 18 6 8.9939 -3.5470 -9.8698 19 7 9.3098 -4.1101 -11.0143 20 14 10.2721 -3.4037 -8.5150 21 1 10.2156 -4.6106 -7.6516 22 1 11.6237 -3.2905 -9.1197 23 1 9.9931 -2.1962 -7.6970 24 6 2.0323 -0.7104 1.2304 25 6 1.6938 -2.0322 1.4519 26 6 2.1582 -2.6853 2.5784 27 6 2.9537 -2.0137 3.4879 28 6 3.2879 -0.6904 3.2690 29 6 2.8271 -0.0387 2.1403 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 0.5137 0.8900 33 1 1.1487 0.5385 -2.5435 34 1 3.2854 -0.9397 -3.6506 35 1 1.8325 -1.9679 -3.6510 36 1 0.6373 -0.0301 -4.9959 37 1 2.1951 0.7586 -6.6325 38 1 4.6067 0.5923 -5.5616 39 1 4.1064 -0.9903 -4.9187 40 1 4.1977 -0.3032 -7.7836 41 1 6.4126 -0.4819 -6.7985 42 1 5.9116 -2.0644 -6.1558 43 1 8.0439 -2.3942 -7.7705 44 1 10.2064 -4.4523 -11.1553 45 1 1.0689 -2.5557 0.7435 46 1 1.8973 -3.7192 2.7493 47 1 3.3143 -2.5231 4.3693 48 1 3.9097 -0.1658 3.9793 49 1 3.0883 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274511069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:53 Heat of formation + Delta-G solvation = -21.214268 kcal Electronic energy + Delta-G solvation = -28080.932412 eV Core-core repulsion = 24008.477191 eV Total energy + Delta-G solvation = -4072.455221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.65218 -39.04874 -38.51681 -37.10627 -35.12874 -34.63179 -33.92872 -32.83495 -31.64135 -31.19619 -29.82718 -28.14374 -26.45609 -24.98227 -24.57212 -23.07430 -22.89599 -22.07614 -20.40060 -19.54778 -19.06088 -18.25751 -17.32988 -17.19994 -16.65393 -16.04375 -15.95356 -15.75800 -15.36647 -15.08925 -14.90059 -14.67938 -14.43810 -14.05203 -13.93347 -13.79867 -13.61123 -13.40590 -13.33653 -12.96708 -12.79067 -12.70607 -12.57041 -12.41429 -12.27712 -12.03188 -11.82536 -11.68823 -11.32227 -11.26049 -11.14736 -10.89849 -10.58225 -10.15246 -9.96520 -9.63807 -9.56178 -9.20897 -9.14198 -9.02418 -8.58780 -8.18337 -8.12478 -6.30059 -3.81478 1.02615 1.14920 1.76209 2.34706 3.00193 3.03937 3.08921 3.16548 3.55359 3.74855 4.10121 4.11165 4.21445 4.30505 4.48033 4.60582 4.65075 4.73898 4.77785 4.81684 4.84906 4.89236 5.08643 5.10031 5.16981 5.22437 5.25162 5.26050 5.36832 5.49028 5.54631 5.58106 5.64555 5.65739 5.70876 5.75391 5.80754 5.94233 6.07281 6.16281 6.24081 6.29141 6.30347 6.53154 6.70556 7.04576 7.17784 7.54144 7.59322 7.92680 8.15387 8.60778 8.95896 9.43458 9.83543 10.83007 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.001678 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.493998 B =16680.783965 C =18381.916894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 H 0.104 0.896 4 C 0.514 3.486 5 O -0.526 6.526 6 N -0.725 5.725 7 C 0.140 3.860 8 C -0.182 4.182 9 C -0.111 4.111 10 C 0.069 3.931 11 N -0.663 5.663 12 C 0.047 3.953 13 C 0.450 3.550 14 O -0.565 6.565 15 N -0.590 5.590 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.069 4.069 25 C -0.084 4.084 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.113 4.113 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.037 0.963 39 H 0.086 0.914 40 H 0.351 0.649 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.371 0.629 44 H 0.273 0.727 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.420 13.088 29.811 36.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.092 4.092 3 H 0.122 0.878 4 C 0.299 3.701 5 O -0.402 6.402 6 N -0.378 5.378 7 C 0.018 3.982 8 C -0.201 4.201 9 C -0.131 4.131 10 C -0.059 4.059 11 N -0.295 5.295 12 C -0.086 4.086 13 C 0.236 3.764 14 O -0.447 6.447 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.070 4.070 25 C -0.102 4.102 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.142 4.142 29 C -0.131 4.131 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.234 0.766 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.171 0.829 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.532 11.555 29.306 36.051 hybrid contribution 1.425 1.243 0.706 2.019 sum -16.107 12.798 30.012 36.386 Atomic orbital electron populations 1.21805 0.91881 1.03222 1.02949 1.20298 0.97772 1.00251 0.90925 0.87756 1.20501 0.80419 0.84802 0.84331 1.90764 1.36995 1.25878 1.86535 1.45994 1.54124 1.32258 1.05387 1.20510 0.99806 0.96143 0.81787 1.22668 0.99391 1.01903 0.96186 1.22835 0.94907 0.96832 0.98505 1.21291 0.93069 0.97520 0.94031 1.60079 1.20025 1.45639 1.03784 1.21731 0.88996 0.99526 0.98318 1.19676 0.83113 0.84541 0.89088 1.90564 1.48754 1.60381 1.44952 1.42201 1.10452 1.54413 1.15900 1.19435 0.98325 1.33627 0.92015 0.86269 1.25040 0.97243 0.97070 0.96804 1.69618 1.20918 1.38573 1.22996 0.86670 0.82013 0.78749 0.81952 1.19546 1.20181 1.19533 1.19274 0.98489 0.94512 0.94677 1.20908 0.99029 0.93777 0.96507 1.21139 0.98305 0.99875 0.94643 1.21162 0.98359 0.94846 0.99412 1.21081 1.00314 0.95064 0.97709 1.20996 0.97690 0.99803 0.94583 0.91715 0.91650 0.91071 0.76607 0.90048 0.90660 0.86373 0.86486 0.94465 0.89636 0.82931 0.93684 0.89353 0.79661 0.91612 0.86366 0.86091 0.86201 0.86104 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.63 8.90 37.15 0.33 -0.30 16 2 C -0.07 -0.47 2.90 -92.93 -0.27 -0.74 16 3 H 0.10 0.49 7.88 -51.93 -0.41 0.08 16 4 C 0.51 4.89 7.03 -10.99 -0.08 4.82 16 5 O -0.53 -7.41 15.13 5.55 0.08 -7.32 16 6 N -0.73 -5.42 5.44 -61.47 -0.33 -5.75 16 7 C 0.14 1.31 5.76 -5.19 -0.03 1.28 16 8 C -0.18 -1.50 9.63 -36.02 -0.35 -1.85 16 9 C -0.11 -1.07 9.77 -36.02 -0.35 -1.42 16 10 C 0.07 0.80 5.77 -4.98 -0.03 0.78 16 11 N -0.66 -10.32 6.11 -116.34 -0.71 -11.03 16 12 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 13 C 0.45 10.40 7.82 -10.99 -0.09 10.31 16 14 O -0.56 -15.37 15.78 5.55 0.09 -15.28 16 15 N -0.59 -14.31 5.09 -10.96 -0.06 -14.36 16 16 C -0.31 -8.76 10.16 -14.93 -0.15 -8.91 16 17 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 18 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 20 Si 0.88 19.66 27.74 -169.99 -4.71 14.94 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 24 C -0.07 -0.59 4.39 -104.62 -0.46 -1.05 16 25 C -0.08 -0.79 7.94 -39.58 -0.31 -1.10 16 26 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 28 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 29 C -0.11 -0.89 9.67 -39.58 -0.38 -1.27 16 30 H 0.06 0.34 7.37 -51.93 -0.38 -0.04 16 31 H 0.06 0.18 7.56 -51.93 -0.39 -0.21 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.40 1.79 7.88 -40.82 -0.32 1.47 16 34 H 0.08 0.88 5.30 -51.93 -0.28 0.60 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 1.01 5.30 -51.93 -0.27 0.73 16 40 H 0.35 5.54 8.42 -39.29 -0.33 5.21 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 45 H 0.12 1.09 7.52 -52.49 -0.39 0.69 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.69 7.95 -52.49 -0.42 0.28 16 LS Contribution 409.16 15.07 6.17 6.17 Total: -1.00 -36.33 409.16 -9.41 -45.74 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -7.22 Total: 13.88 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.49 Total: -1.78 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.33 Total: -56.35 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.17 Total: -22.60 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.33 -9.41 -45.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274511069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.525 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds