Wall clock time and date at job start Wed Apr 1 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47363 * 2 1 4 4 C 1.50701 * 109.47095 * 240.00140 * 2 1 3 5 5 O 1.21286 * 120.00168 * 239.99743 * 4 2 1 6 6 N 1.34776 * 119.99761 * 60.00061 * 4 2 1 7 7 C 1.46501 * 119.99904 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.47492 * 179.97438 * 7 6 4 9 9 C 1.30992 * 120.00115 * 127.15233 * 8 7 6 10 10 C 1.50703 * 120.00476 * 7.56566 * 9 8 7 11 11 N 1.46899 * 109.47389 * 126.99864 * 10 9 8 12 12 C 1.46894 * 110.99914 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47344 * 180.02562 * 12 11 10 14 14 O 1.21291 * 119.99446 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00217 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99982 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00237 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00470 * 180.02562 * 16 15 13 19 19 N 1.31404 * 120.00352 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99396 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46698 * 90.00712 * 20 18 16 22 22 H 1.48501 * 109.46819 * 210.00156 * 20 18 16 23 23 H 1.48494 * 109.47270 * 330.00074 * 20 18 16 24 24 C 1.50703 * 109.47371 * 120.00163 * 2 1 3 25 25 C 1.38233 * 119.99649 * 59.72930 * 24 2 1 26 26 C 1.38238 * 119.99890 * 179.78866 * 25 24 2 27 27 C 1.38241 * 119.99694 * 0.44054 * 26 25 24 28 28 C 1.38234 * 120.00195 * 359.81166 * 27 26 25 29 29 C 1.38232 * 120.00125 * 239.99803 * 24 2 1 30 30 H 1.09003 * 109.47363 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47248 * 59.99909 * 1 2 3 32 32 H 1.09002 * 109.47631 * 299.99503 * 1 2 3 33 33 H 0.96991 * 120.00336 * 359.97438 * 6 4 2 34 34 H 1.09000 * 109.47122 * 300.00182 * 7 6 4 35 35 H 1.09004 * 109.47264 * 59.99810 * 7 6 4 36 36 H 1.08004 * 119.99545 * 307.15879 * 8 7 6 37 37 H 1.08004 * 119.99866 * 187.56209 * 9 8 7 38 38 H 1.09000 * 109.47495 * 247.00675 * 10 9 8 39 39 H 1.09005 * 109.46826 * 7.00140 * 10 9 8 40 40 H 1.00901 * 110.99215 * 56.05328 * 11 10 9 41 41 H 1.09001 * 109.47543 * 300.00429 * 12 11 10 42 42 H 1.09002 * 109.47179 * 60.00388 * 12 11 10 43 43 H 0.97002 * 120.00244 * 359.97438 * 15 13 12 44 44 H 0.96999 * 120.00059 * 180.02562 * 19 18 16 45 45 H 1.07999 * 120.00517 * 359.97438 * 25 24 2 46 46 H 1.07994 * 120.00487 * 180.27090 * 26 25 24 47 47 H 1.08000 * 119.99787 * 179.83385 * 27 26 25 48 48 H 1.07997 * 120.00320 * 180.02562 * 28 27 26 49 49 H 1.08000 * 119.99674 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7066 -0.2498 -2.4545 7 6 2.1954 -0.9401 -3.6508 8 6 1.6925 -0.2301 -4.8813 9 6 2.5350 0.1445 -5.8117 10 6 3.9787 -0.2813 -5.7368 11 7 4.3677 -0.9183 -7.0020 12 6 5.7719 -1.3479 -6.9653 13 6 6.1340 -1.9947 -8.2774 14 8 5.3039 -2.0881 -9.1568 15 7 7.3800 -2.4692 -8.4736 16 6 7.7094 -3.0572 -9.6675 17 1 6.9703 -3.1404 -10.4506 18 6 8.9939 -3.5470 -9.8698 19 7 9.3098 -4.1101 -11.0143 20 14 10.2721 -3.4037 -8.5150 21 1 10.2156 -4.6106 -7.6516 22 1 11.6237 -3.2905 -9.1197 23 1 9.9931 -2.1962 -7.6970 24 6 2.0323 -0.7104 1.2304 25 6 1.6938 -2.0322 1.4519 26 6 2.1582 -2.6853 2.5784 27 6 2.9537 -2.0137 3.4879 28 6 3.2879 -0.6904 3.2690 29 6 2.8271 -0.0387 2.1403 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 0.5137 0.8900 33 1 1.1487 0.5385 -2.5435 34 1 3.2854 -0.9397 -3.6506 35 1 1.8325 -1.9679 -3.6510 36 1 0.6373 -0.0301 -4.9959 37 1 2.1951 0.7586 -6.6325 38 1 4.6067 0.5923 -5.5616 39 1 4.1064 -0.9903 -4.9187 40 1 4.1977 -0.3032 -7.7836 41 1 6.4126 -0.4819 -6.7985 42 1 5.9116 -2.0644 -6.1558 43 1 8.0439 -2.3942 -7.7705 44 1 10.2064 -4.4523 -11.1553 45 1 1.0689 -2.5557 0.7435 46 1 1.8973 -3.7192 2.7493 47 1 3.3143 -2.5231 4.3693 48 1 3.9097 -0.1658 3.9793 49 1 3.0883 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274511069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:52 Heat of formation + Delta-G solvation = -48.551636 kcal Electronic energy + Delta-G solvation = -28082.117850 eV Core-core repulsion = 24008.477191 eV Total energy + Delta-G solvation = -4073.640658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.31891 -40.34367 -39.66484 -38.06916 -36.29049 -35.79418 -35.20667 -33.84735 -33.63415 -31.76921 -30.39610 -29.36443 -27.47373 -26.27968 -25.31221 -24.40326 -23.47819 -22.70957 -21.36003 -21.06966 -20.44846 -19.67716 -18.12465 -17.88276 -17.66649 -17.17654 -17.01588 -16.73041 -16.61380 -16.22790 -15.85692 -15.56866 -15.44676 -15.32101 -15.01378 -14.71157 -14.48367 -14.44805 -14.26223 -14.16000 -13.97406 -13.83617 -13.39448 -13.26658 -13.16757 -13.02081 -12.97905 -12.75483 -12.50811 -12.42917 -11.99225 -11.86213 -11.79447 -11.67320 -11.53748 -10.89761 -10.47771 -10.37436 -10.26823 -9.95821 -9.76051 -9.61072 -9.28438 -8.43046 -6.04063 0.43884 0.54928 1.04865 1.28835 1.34478 1.42950 1.64146 1.92504 2.21335 2.35070 2.77159 2.96332 3.12998 3.51523 3.57532 3.72476 3.82176 4.04916 4.09273 4.11218 4.14762 4.24152 4.26939 4.29617 4.36842 4.39716 4.46233 4.48973 4.63322 4.68484 4.69608 4.76511 4.84909 4.93627 4.98219 5.14063 5.18180 5.26229 5.38701 5.50150 5.58407 5.59172 5.65429 5.70203 5.80646 5.88504 6.00605 6.14417 6.36165 6.57577 6.58274 6.85643 7.27599 7.37201 7.93248 8.74466 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.001678 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.493998 B =16680.783965 C =18381.916894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 H 0.131 0.869 4 C 0.511 3.489 5 O -0.579 6.579 6 N -0.710 5.710 7 C 0.140 3.860 8 C -0.162 4.162 9 C -0.127 4.127 10 C 0.072 3.928 11 N -0.683 5.683 12 C 0.061 3.939 13 C 0.448 3.552 14 O -0.613 6.613 15 N -0.590 5.590 16 C -0.330 4.330 17 H 0.056 0.944 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.232 1.232 24 C -0.082 4.082 25 C -0.105 4.105 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.131 4.131 29 C -0.122 4.122 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.417 0.583 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.347 0.653 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.390 0.610 44 H 0.280 0.720 45 H 0.108 0.892 46 H 0.129 0.871 47 H 0.138 0.862 48 H 0.142 0.858 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.113 15.647 33.170 40.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 H 0.149 0.851 4 C 0.298 3.702 5 O -0.458 6.458 6 N -0.362 5.362 7 C 0.017 3.983 8 C -0.181 4.181 9 C -0.147 4.147 10 C -0.055 4.055 11 N -0.315 5.315 12 C -0.072 4.072 13 C 0.236 3.764 14 O -0.498 6.498 15 N -0.232 5.232 16 C -0.459 4.459 17 H 0.074 0.926 18 C -0.213 4.213 19 N -0.573 5.573 20 Si 0.784 3.216 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.155 1.155 24 C -0.082 4.082 25 C -0.123 4.123 26 C -0.156 4.156 27 C -0.148 4.148 28 C -0.149 4.149 29 C -0.140 4.140 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.255 0.745 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.097 0.903 42 H 0.127 0.873 43 H 0.225 0.775 44 H 0.089 0.911 45 H 0.126 0.874 46 H 0.147 0.853 47 H 0.155 0.845 48 H 0.160 0.840 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.270 14.167 32.683 39.587 hybrid contribution 1.197 0.423 -0.391 1.328 sum -16.073 14.590 32.292 38.910 Atomic orbital electron populations 1.21815 0.90219 1.02874 1.04579 1.20351 0.99008 1.00714 0.88480 0.85134 1.21063 0.79496 0.84154 0.85449 1.90743 1.39495 1.28254 1.87283 1.45839 1.53634 1.32393 1.04369 1.20387 0.99097 0.95781 0.83060 1.22761 1.00329 1.00109 0.94925 1.22835 0.94052 0.98177 0.99602 1.21313 0.94659 0.97771 0.91792 1.60072 1.19200 1.46800 1.05476 1.21639 0.90579 1.00670 0.94285 1.20941 0.81934 0.82788 0.90726 1.90539 1.50093 1.61766 1.47384 1.42034 1.11597 1.54645 1.14937 1.19019 0.97960 1.36135 0.92826 0.92583 1.26109 0.99539 0.95589 1.00069 1.69796 1.22047 1.39505 1.25953 0.85376 0.77496 0.80602 0.78128 1.18342 1.19804 1.15481 1.19559 0.98649 0.94411 0.95621 1.21004 0.99824 0.94647 0.96841 1.21372 0.98813 1.00553 0.94908 1.21450 0.98159 0.95331 0.99867 1.21437 1.00224 0.95107 0.98118 1.21334 0.97252 1.00939 0.94452 0.93088 0.89489 0.89948 0.74521 0.91394 0.92370 0.83926 0.85446 0.92928 0.89878 0.83371 0.90321 0.87280 0.77483 0.91093 0.87385 0.85332 0.84451 0.83990 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.90 71.98 0.64 -0.30 16 2 C -0.06 -0.73 2.90 -12.29 -0.04 -0.76 16 3 H 0.13 0.78 7.88 -2.39 -0.02 0.76 16 4 C 0.51 9.17 7.03 87.66 0.62 9.78 16 5 O -0.58 -16.44 15.13 -3.05 -0.05 -16.48 16 6 N -0.71 -9.17 5.44 -466.77 -2.54 -11.71 16 7 C 0.14 2.42 5.76 85.63 0.49 2.91 16 8 C -0.16 -2.26 9.63 25.66 0.25 -2.02 16 9 C -0.13 -2.15 9.77 25.66 0.25 -1.90 16 10 C 0.07 1.52 5.77 85.56 0.49 2.01 16 11 N -0.68 -20.27 6.11 -521.98 -3.19 -23.47 16 12 C 0.06 1.91 6.17 85.56 0.53 2.44 16 13 C 0.45 20.71 7.82 87.66 0.69 21.40 16 14 O -0.61 -34.60 15.78 -3.06 -0.05 -34.65 16 15 N -0.59 -28.48 5.09 -306.99 -1.56 -30.05 16 16 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 17 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 18 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 19 N -0.93 -56.81 13.96 21.66 0.30 -56.51 16 20 Si 0.96 39.51 27.74 68.60 1.90 41.42 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 24 C -0.08 -1.33 4.39 -19.87 -0.09 -1.42 16 25 C -0.10 -2.01 7.94 22.27 0.18 -1.83 16 26 C -0.14 -2.42 10.05 22.27 0.22 -2.20 16 27 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 28 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 29 C -0.12 -1.71 9.67 22.27 0.22 -1.50 16 30 H 0.05 0.50 7.37 -2.39 -0.02 0.48 16 31 H 0.09 0.20 7.56 -2.39 -0.02 0.19 16 32 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.42 2.41 7.88 -92.71 -0.73 1.67 16 34 H 0.07 1.39 5.30 -2.39 -0.01 1.38 16 35 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 37 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.80 5.30 -2.38 -0.01 1.79 16 40 H 0.35 10.67 8.42 -89.69 -0.76 9.92 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.39 15.62 5.76 -92.71 -0.53 15.08 16 44 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.11 2.15 7.52 -2.91 -0.02 2.13 16 46 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 47 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 48 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.14 1.24 7.95 -2.91 -0.02 1.22 16 Total: -1.00 -85.86 409.16 -0.06 -85.92 By element: Atomic # 1 Polarization: 42.47 SS G_CDS: -1.09 Total: 41.38 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 6.22 Total: 4.15 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -6.99 Total: -121.74 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.09 Total: -51.13 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.90 Total: 41.42 kcal Total: -85.86 -0.06 -85.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274511069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.365 kcal (2) G-P(sol) polarization free energy of solvation -85.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds