Wall clock time and date at job start Wed Apr 1 2020 03:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21282 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99858 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.46988 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47315 * 179.97438 * 8 7 5 10 10 C 1.38365 * 119.85250 * 269.72787 * 9 8 7 11 11 C 1.37961 * 120.14508 * 179.72660 * 10 9 8 12 12 C 1.39580 * 119.85206 * 0.53927 * 11 10 9 13 13 C 1.47844 * 120.14683 * 179.71058 * 12 11 10 14 14 N 1.34777 * 119.99548 * 0.02562 * 13 12 11 15 15 O 1.21551 * 120.00111 * 180.02562 * 13 12 11 16 16 C 1.39580 * 119.70997 * 359.73550 * 12 11 10 17 17 C 1.37957 * 119.85264 * 359.97438 * 16 12 11 18 18 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 19 19 C 1.53486 * 114.20850 * 60.00280 * 18 2 1 20 20 N 1.47064 * 87.98715 * 87.51930 * 19 18 2 21 21 C 1.36944 * 136.05968 * 207.08932 * 20 19 18 22 22 H 1.08003 * 119.99220 * 7.55219 * 21 20 19 23 23 C 1.38804 * 120.00270 * 187.55676 * 21 20 19 24 24 N 1.31616 * 120.00491 * 174.37770 * 23 21 20 25 25 Si 1.86810 * 119.99801 * 354.37977 * 23 21 20 26 26 H 1.48499 * 109.46858 * 174.95062 * 25 23 21 27 27 H 1.48498 * 109.46907 * 294.94544 * 25 23 21 28 28 H 1.48495 * 109.47036 * 54.94600 * 25 23 21 29 29 C 1.47066 * 87.88390 * 27.34185 * 20 19 18 30 30 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 31 31 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 33 33 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 34 34 H 1.09000 * 109.46987 * 299.99215 * 7 5 4 35 35 H 1.08998 * 109.47490 * 59.99631 * 7 5 4 36 36 H 1.09000 * 109.47179 * 299.99607 * 8 7 5 37 37 H 1.09005 * 109.47635 * 59.99656 * 8 7 5 38 38 H 1.08001 * 119.92719 * 359.97438 * 10 9 8 39 39 H 1.07998 * 120.07741 * 180.25420 * 11 10 9 40 40 H 0.97001 * 120.00466 * 0.02562 * 14 13 12 41 41 H 0.96999 * 119.99500 * 179.97438 * 14 13 12 42 42 H 1.07998 * 120.07415 * 179.97438 * 16 12 11 43 43 H 1.08002 * 119.92926 * 179.97438 * 17 16 12 44 44 H 1.08998 * 113.41116 * 286.79710 * 18 2 1 45 45 H 1.09003 * 113.46770 * 332.73878 * 19 18 2 46 46 H 1.09004 * 113.52153 * 202.31032 * 19 18 2 47 47 H 0.97003 * 119.99848 * 354.81683 * 24 23 21 48 48 H 1.08996 * 113.46631 * 87.44126 * 29 20 19 49 49 H 1.09001 * 113.46561 * 217.88042 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1586 2.4114 7 6 2.6499 -0.7286 3.5874 8 6 2.7019 0.2546 4.7585 9 6 3.2041 -0.4558 5.9889 10 6 2.3061 -1.0651 6.8473 11 6 2.7597 -1.7220 7.9725 12 6 4.1270 -1.7614 8.2501 13 6 4.6198 -2.4580 9.4575 14 7 3.7480 -3.0572 10.2926 15 8 5.8110 -2.4903 9.6969 16 6 5.0272 -1.1398 7.3831 17 6 4.5608 -0.4915 6.2582 18 6 2.0399 -0.7213 -1.2493 19 6 1.5898 -0.0846 -2.5714 20 7 2.7723 0.7864 -2.4946 21 6 3.1105 2.0324 -2.9511 22 1 2.3637 2.6574 -3.4180 23 6 4.4131 2.4918 -2.8140 24 7 4.7655 3.6412 -3.3498 25 14 5.6662 1.4788 -1.8688 26 1 7.0008 2.1220 -1.9706 27 1 5.2629 1.3987 -0.4418 28 1 5.7308 0.1107 -2.4425 29 6 3.4340 -0.2723 -1.7172 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 1.9776 -1.5509 3.8325 35 1 3.6492 -1.1205 3.3978 36 1 3.3744 1.0766 4.5132 37 1 1.7027 0.6469 4.9483 38 1 1.2480 -1.0298 6.6338 39 1 2.0581 -2.2006 8.6395 40 1 2.7974 -3.0317 10.1014 41 1 4.0713 -3.5145 11.0846 42 1 6.0863 -1.1664 7.5924 43 1 5.2562 -0.0098 5.5867 44 1 1.9117 -1.8029 -1.2076 45 1 0.6466 0.4562 -2.4938 46 1 1.6122 -0.7736 -3.4158 47 1 4.1374 4.1310 -3.9035 48 1 3.9431 -1.0113 -2.3358 49 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276404177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:15 Heat of formation + Delta-G solvation = -31.143098 kcal Electronic energy + Delta-G solvation = -29137.263890 eV Core-core repulsion = 25064.378123 eV Total energy + Delta-G solvation = -4072.885768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.31389 -41.06184 -40.08877 -39.33047 -36.19708 -35.24921 -34.55448 -34.49588 -32.12167 -31.85788 -30.55243 -29.59177 -27.14892 -26.34851 -25.19162 -23.62579 -23.60501 -22.78450 -21.41749 -21.17982 -20.51523 -19.43894 -19.17109 -18.08908 -17.87130 -17.61088 -17.00430 -16.63087 -16.14813 -16.04582 -15.94805 -15.85024 -15.71236 -15.63272 -15.18826 -14.76871 -14.61639 -14.52284 -14.25095 -14.05119 -13.81375 -13.54699 -13.36199 -13.14069 -12.82088 -12.77893 -12.67425 -12.44617 -12.25171 -12.19731 -12.04008 -11.78618 -11.66881 -11.30295 -11.21056 -11.06021 -10.91232 -10.77957 -10.74146 -10.02700 -9.94954 -9.73888 -9.19327 -8.61550 -5.45896 -0.18993 0.42085 1.31885 1.43984 1.62524 1.73521 1.80201 2.25514 2.51938 2.53930 2.86996 3.04079 3.21104 3.44706 3.66009 3.80955 3.81884 3.90403 4.03056 4.03634 4.20026 4.31714 4.36784 4.43259 4.43972 4.52896 4.57199 4.63581 4.68257 4.69857 4.77300 4.79262 4.84796 4.87959 4.92242 5.10245 5.15433 5.20874 5.22188 5.28903 5.29903 5.38384 5.43747 5.63326 5.66648 5.84304 5.92947 5.95792 6.41200 6.68402 6.70781 7.27571 7.33899 7.40458 8.29360 8.90185 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.002049 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.605408 B =13659.969407 C =14677.915973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.167 3.833 3 H 0.039 0.961 4 N -0.711 5.711 5 C 0.503 3.497 6 O -0.592 6.592 7 C -0.122 4.122 8 C -0.068 4.068 9 C -0.050 4.050 10 C -0.121 4.121 11 C -0.071 4.071 12 C -0.161 4.161 13 C 0.560 3.440 14 N -0.828 5.828 15 O -0.594 6.594 16 C -0.073 4.073 17 C -0.132 4.132 18 C -0.105 4.105 19 C 0.124 3.876 20 N -0.664 5.664 21 C -0.282 4.282 22 H 0.047 0.953 23 C -0.093 4.093 24 N -0.975 5.975 25 Si 1.113 2.887 26 H -0.308 1.308 27 H -0.286 1.286 28 H -0.251 1.251 29 C 0.088 3.912 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.419 0.581 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.418 0.582 41 H 0.412 0.588 42 H 0.122 0.878 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.245 0.755 48 H 0.064 0.936 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 -22.480 25.936 35.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.062 3.938 3 H 0.057 0.943 4 N -0.363 5.363 5 C 0.291 3.709 6 O -0.472 6.472 7 C -0.161 4.161 8 C -0.106 4.106 9 C -0.050 4.050 10 C -0.139 4.139 11 C -0.089 4.089 12 C -0.164 4.164 13 C 0.347 3.653 14 N -0.393 5.393 15 O -0.476 6.476 16 C -0.092 4.092 17 C -0.150 4.150 18 C -0.125 4.125 19 C -0.001 4.001 20 N -0.393 5.393 21 C -0.410 4.410 22 H 0.065 0.935 23 C -0.284 4.284 24 N -0.621 5.621 25 Si 0.940 3.060 26 H -0.236 1.236 27 H -0.213 1.213 28 H -0.176 1.176 29 C -0.036 4.036 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.256 0.744 34 H 0.149 0.851 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.251 0.749 41 H 0.244 0.756 42 H 0.140 0.860 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.082 0.918 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.574 -21.385 26.434 35.066 hybrid contribution -1.372 0.702 -1.096 1.891 sum -9.946 -20.683 25.338 34.187 Atomic orbital electron populations 1.21997 0.93609 1.03405 1.01410 1.20350 0.94757 0.95418 0.83309 0.94309 1.45942 1.66928 1.14747 1.08715 1.21435 0.76666 0.86914 0.85853 1.90730 1.52081 1.18537 1.85892 1.21650 1.04928 0.99544 0.90004 1.20340 1.02687 0.96804 0.90800 1.20142 0.93363 0.95820 0.95711 1.21330 1.00974 0.97543 0.94051 1.21586 0.93356 0.96775 0.97193 1.19944 0.95342 1.04287 0.96827 1.18540 0.85460 0.77838 0.83492 1.43579 1.11295 1.56875 1.27543 1.90801 1.18159 1.62534 1.76080 1.21293 1.00024 0.94587 0.93255 1.21192 0.95864 1.00362 0.97603 1.23012 0.95057 1.01118 0.93291 1.22668 0.90854 0.91327 0.95296 1.46144 1.16379 1.12384 1.64413 1.19985 0.95274 0.90802 1.34955 0.93531 1.27033 0.98734 0.99792 1.02836 1.71008 1.37750 1.16851 1.36521 0.83212 0.72963 0.74902 0.74963 1.23644 1.21338 1.17555 1.23100 0.96473 0.90204 0.93839 0.92317 0.89158 0.93774 0.74363 0.85111 0.87114 0.92028 0.90001 0.82643 0.81855 0.74945 0.75555 0.85978 0.85051 0.84541 0.93259 0.91802 0.94638 0.91808 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.29 71.98 0.67 -2.95 16 2 C 0.17 4.93 2.43 44.99 0.11 5.04 16 3 H 0.04 1.67 7.36 -2.39 -0.02 1.65 16 4 N -0.71 -15.61 5.08 -442.52 -2.25 -17.86 16 5 C 0.50 12.65 7.79 87.65 0.68 13.34 16 6 O -0.59 -21.82 15.64 -3.04 -0.05 -21.86 16 7 C -0.12 -1.77 5.68 29.85 0.17 -1.60 16 8 C -0.07 -1.16 4.63 29.85 0.14 -1.03 16 9 C -0.05 -0.71 5.14 -19.81 -0.10 -0.81 16 10 C -0.12 -1.16 9.68 22.23 0.22 -0.94 16 11 C -0.07 -0.59 9.54 22.53 0.21 -0.38 16 12 C -0.16 -2.40 5.87 -20.09 -0.12 -2.52 16 13 C 0.56 9.36 8.05 86.79 0.70 10.05 16 14 N -0.83 -5.38 8.82 -175.61 -1.55 -6.93 16 15 O -0.59 -15.77 17.18 -3.87 -0.07 -15.84 16 16 C -0.07 -1.31 9.60 22.53 0.22 -1.09 16 17 C -0.13 -2.17 9.68 22.23 0.22 -1.96 16 18 C -0.11 -2.91 3.73 -10.37 -0.04 -2.94 16 19 C 0.12 4.31 8.08 83.17 0.67 4.98 16 20 N -0.66 -31.84 3.49 -738.03 -2.58 -34.42 16 21 C -0.28 -16.98 11.08 84.03 0.93 -16.05 16 22 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 23 C -0.09 -5.81 5.50 84.86 0.47 -5.35 16 24 N -0.98 -65.90 13.70 21.65 0.30 -65.60 16 25 Si 1.11 56.25 25.16 68.60 1.73 57.97 16 26 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 27 H -0.29 -13.88 6.51 99.48 0.65 -13.23 16 28 H -0.25 -10.98 6.20 99.48 0.62 -10.36 16 29 C 0.09 3.35 5.24 83.26 0.44 3.79 16 30 H 0.06 1.57 6.50 -2.39 -0.02 1.55 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.42 5.38 8.60 -92.71 -0.80 4.58 16 34 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.36 8.04 -2.39 -0.02 1.34 16 37 H 0.08 1.43 8.04 -2.38 -0.02 1.42 16 38 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.16 0.01 6.41 -2.91 -0.02 -0.01 16 40 H 0.42 -0.26 6.86 -92.71 -0.64 -0.89 16 41 H 0.41 1.87 8.93 -92.71 -0.83 1.04 16 42 H 0.12 2.45 7.65 -2.91 -0.02 2.43 16 43 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 1.71 6.43 -2.39 -0.02 1.69 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.24 16.58 8.73 -92.71 -0.81 15.77 16 48 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 49 H 0.04 1.55 4.71 -2.39 -0.01 1.53 16 Total: -1.00 -94.19 398.85 -0.33 -94.52 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -1.44 Total: 10.42 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 5.58 Total: -0.41 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -6.08 Total: -124.80 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.11 Total: -37.70 kcal Atomic # 14 Polarization: 56.25 SS G_CDS: 1.73 Total: 57.97 kcal Total: -94.19 -0.33 -94.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276404177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.377 kcal (2) G-P(sol) polarization free energy of solvation -94.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds