Wall clock time and date at job start Wed Apr 1 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46952 * 2 1 4 4 N 1.46497 * 109.47225 * 240.00200 * 2 1 3 5 5 C 1.34773 * 120.00456 * 84.99582 * 4 2 1 6 6 O 1.21284 * 119.99726 * 0.02562 * 5 4 2 7 7 C 1.50694 * 120.00435 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47530 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47436 * 179.97438 * 8 7 5 10 10 C 1.37975 * 120.07505 * 102.01834 * 9 8 7 11 11 C 1.38337 * 120.14492 * 179.97438 * 10 9 8 12 12 C 1.38379 * 120.29489 * 0.02585 * 11 10 9 13 13 C 1.37941 * 120.14249 * 359.97309 * 12 11 10 14 14 C 1.39559 * 120.07101 * 281.74291 * 9 8 7 15 15 C 1.47840 * 120.14638 * 0.02562 * 14 9 8 16 16 N 1.34777 * 119.99989 * 174.21656 * 15 14 9 17 17 O 1.21553 * 120.00189 * 354.21219 * 15 14 9 18 18 C 1.52992 * 109.47397 * 119.99425 * 2 1 3 19 19 C 1.53948 * 113.74469 * 281.82707 * 18 2 1 20 20 N 1.47818 * 86.03348 * 222.08304 * 19 18 2 21 21 C 1.36939 * 134.45153 * 204.64264 * 20 19 18 22 22 H 1.08002 * 119.99932 * 179.86292 * 21 20 19 23 23 C 1.38816 * 120.00418 * 359.87026 * 21 20 19 24 24 N 1.31619 * 119.99876 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99976 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47452 * 59.99540 * 25 23 21 27 27 H 1.48507 * 109.46766 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47135 * 299.99443 * 25 23 21 29 29 C 1.47572 * 91.05515 * 24.54753 * 20 19 18 30 30 H 1.08997 * 109.47344 * 55.02813 * 1 2 3 31 31 H 1.09007 * 109.47312 * 295.02440 * 1 2 3 32 32 H 1.09002 * 109.47042 * 175.03039 * 1 2 3 33 33 H 0.97005 * 119.99713 * 264.99168 * 4 2 1 34 34 H 1.09005 * 109.46800 * 300.00065 * 7 5 4 35 35 H 1.08998 * 109.47262 * 59.99731 * 7 5 4 36 36 H 1.09000 * 109.47394 * 300.00159 * 8 7 5 37 37 H 1.09007 * 109.47167 * 59.99749 * 8 7 5 38 38 H 1.08004 * 119.92442 * 359.97438 * 10 9 8 39 39 H 1.07995 * 119.85059 * 179.97438 * 11 10 9 40 40 H 1.07992 * 119.93176 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.07319 * 180.02562 * 13 12 11 42 42 H 0.96998 * 120.00244 * 359.97438 * 16 15 14 43 43 H 0.97002 * 119.99858 * 180.02562 * 16 15 14 44 44 H 1.09005 * 112.94570 * 53.41872 * 18 2 1 45 45 H 1.09000 * 113.76855 * 336.34585 * 19 18 2 46 46 H 1.08998 * 113.76774 * 107.74546 * 19 18 2 47 47 H 0.96999 * 119.99982 * 180.02562 * 24 23 21 48 48 H 1.09001 * 113.77327 * 221.15471 * 29 20 19 49 49 H 1.08996 * 113.87391 * 89.76544 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8589 1.1586 -2.4115 7 6 2.6488 -0.7288 -3.5877 8 6 2.7009 0.2544 -4.7588 9 6 3.2033 -0.4559 -5.9892 10 6 2.3167 -0.8526 -6.9691 11 6 2.7763 -1.5043 -8.0995 12 6 4.1267 -1.7633 -8.2553 13 6 5.0237 -1.3721 -7.2831 14 6 4.5672 -0.7089 -6.1428 15 6 5.5236 -0.2819 -5.0994 16 7 6.8225 -0.6290 -5.1932 17 8 5.1385 0.3823 -4.1571 18 6 2.0400 -0.7211 1.2492 19 6 1.9744 0.1332 2.5283 20 7 3.3098 -0.4176 2.8416 21 6 4.0194 -0.6140 3.9962 22 1 5.0067 -1.0501 3.9557 23 6 3.4698 -0.2529 5.2187 24 7 2.2669 0.2789 5.2680 25 14 4.4381 -0.5202 6.7935 26 1 5.7079 0.2471 6.7303 27 1 3.6358 -0.0541 7.9530 28 1 4.7406 -1.9657 6.9493 29 6 3.5702 -0.6728 1.4116 30 1 -0.3634 0.5890 -0.8421 31 1 -0.3634 0.4347 0.9312 32 1 -0.3633 -1.0238 -0.0890 33 1 2.2491 -1.6317 -1.1526 34 1 3.6480 -1.1213 -3.3985 35 1 1.9760 -1.5506 -3.8325 36 1 1.7020 0.6474 -4.9481 37 1 3.3741 1.0761 -4.5137 38 1 1.2614 -0.6538 -6.8534 39 1 2.0781 -1.8130 -8.8633 40 1 4.4791 -2.2729 -9.1398 41 1 6.0775 -1.5745 -7.4061 42 1 7.1298 -1.1593 -5.9450 43 1 7.4500 -0.3491 -4.5084 44 1 1.6177 -1.7192 1.3660 45 1 1.9750 1.2068 2.3400 46 1 1.1954 -0.1775 3.2245 47 1 1.8830 0.5316 6.1222 48 1 4.0628 -1.6256 1.2178 49 1 4.0407 0.1624 0.8930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276453858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:28 Heat of formation + Delta-G solvation = -1.073698 kcal Electronic energy + Delta-G solvation = -29750.337420 eV Core-core repulsion = 25678.755559 eV Total energy + Delta-G solvation = -4071.581861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.76568 -39.55229 -38.45119 -37.92855 -34.90483 -34.47933 -33.53012 -32.10074 -31.28596 -30.83410 -29.48756 -27.39860 -25.41179 -24.61103 -24.13364 -23.67545 -21.94453 -21.12030 -20.69636 -20.04503 -18.93436 -18.28190 -17.14050 -16.90799 -16.68957 -15.99767 -15.86470 -15.65230 -15.39680 -15.00833 -14.79645 -14.66637 -14.13966 -13.90039 -13.84448 -13.46365 -13.43378 -13.14245 -12.92674 -12.72463 -12.21989 -12.08123 -11.97753 -11.90796 -11.50546 -11.41856 -11.31312 -11.15072 -11.09055 -10.81108 -10.60685 -10.26994 -10.01780 -9.93343 -9.84972 -9.73766 -9.45726 -9.40509 -9.32248 -9.06080 -8.73890 -8.63847 -6.80481 -5.70619 -3.02320 0.46499 0.92747 2.57064 2.99223 3.17477 3.39593 3.43275 3.47004 3.48559 3.57624 4.34445 4.39839 4.43544 4.50839 4.62461 4.91673 4.99456 5.01725 5.16288 5.20219 5.24306 5.31849 5.40898 5.49701 5.56195 5.61532 5.64033 5.78466 5.79475 5.87466 5.92303 6.01041 6.10924 6.14238 6.19853 6.34823 6.41503 6.46266 6.47873 6.54951 6.56687 6.71358 6.76392 6.96534 7.00550 7.29724 7.45055 7.62280 7.86001 7.98409 8.04583 8.58149 9.10917 9.77022 10.67639 11.46732 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.002121 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.933981 B =13197.181832 C =14339.298930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.086 0.914 4 N -0.722 5.722 5 C 0.517 3.483 6 O -0.544 6.544 7 C -0.124 4.124 8 C -0.077 4.077 9 C -0.016 4.016 10 C -0.126 4.126 11 C -0.090 4.090 12 C -0.136 4.136 13 C -0.085 4.085 14 C -0.141 4.141 15 C 0.555 3.445 16 N -0.854 5.854 17 O -0.517 6.517 18 C -0.146 4.146 19 C 0.176 3.824 20 N -0.613 5.613 21 C -0.221 4.221 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.126 3.874 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.396 0.604 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.398 0.602 43 H 0.406 0.594 44 H 0.087 0.913 45 H 0.028 0.972 46 H 0.074 0.926 47 H 0.254 0.746 48 H 0.039 0.961 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -7.324 -31.033 31.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.104 0.896 4 N -0.373 5.373 5 C 0.304 3.696 6 O -0.421 6.421 7 C -0.164 4.164 8 C -0.114 4.114 9 C -0.017 4.017 10 C -0.144 4.144 11 C -0.108 4.108 12 C -0.154 4.154 13 C -0.103 4.103 14 C -0.144 4.144 15 C 0.341 3.659 16 N -0.418 5.418 17 O -0.393 6.393 18 C -0.166 4.166 19 C 0.050 3.950 20 N -0.339 5.339 21 C -0.349 4.349 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.000 4.000 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.230 0.770 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.227 0.773 43 H 0.238 0.762 44 H 0.105 0.895 45 H 0.046 0.954 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.057 0.943 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.936 -6.024 -30.143 30.800 hybrid contribution 1.233 -0.782 0.685 1.612 sum 3.169 -6.806 -29.459 30.400 Atomic orbital electron populations 1.22105 0.95681 1.01479 1.02272 1.21061 0.93592 0.97500 0.83285 0.89623 1.46134 1.67341 1.13905 1.09878 1.20498 0.77209 0.87357 0.84552 1.90674 1.50245 1.16011 1.85173 1.21491 1.02973 0.98900 0.93019 1.20625 1.02733 0.98607 0.89409 1.20139 0.91571 0.94066 0.95918 1.21167 1.00025 0.99368 0.93848 1.21384 0.95798 0.96416 0.97210 1.21077 0.93421 1.01500 0.99394 1.21265 0.99670 0.96322 0.93073 1.19786 0.93904 1.04353 0.96362 1.18345 0.82462 0.79467 0.85592 1.43807 1.09808 1.58274 1.29925 1.90885 1.77457 1.37864 1.33092 1.23825 0.97526 1.00632 0.94651 1.22227 0.89522 0.93906 0.89356 1.46000 1.16390 1.71876 0.99670 1.18979 0.98389 1.34673 0.82878 0.90430 1.24782 0.97102 1.01257 0.97463 1.69803 1.15378 1.47346 1.24424 0.86201 0.78887 0.77771 0.82910 1.21251 1.21569 1.21145 1.22521 0.93175 0.97622 0.86665 0.92867 0.91207 0.92934 0.77043 0.88845 0.89918 0.90847 0.86888 0.85095 0.85512 0.85490 0.85720 0.77297 0.76238 0.89476 0.95446 0.90768 0.93624 0.94292 0.94942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.46 37.16 0.35 -2.03 16 2 C 0.15 2.53 2.29 -67.94 -0.16 2.37 16 3 H 0.09 1.69 7.48 -51.93 -0.39 1.30 16 4 N -0.72 -10.41 4.94 -53.81 -0.27 -10.68 16 5 C 0.52 7.94 7.79 -10.99 -0.09 7.86 16 6 O -0.54 -10.45 15.64 5.55 0.09 -10.36 16 7 C -0.12 -1.46 5.21 -27.89 -0.15 -1.60 16 8 C -0.08 -0.91 3.91 -27.88 -0.11 -1.02 16 9 C -0.02 -0.15 5.18 -104.22 -0.54 -0.69 16 10 C -0.13 -0.95 9.66 -39.64 -0.38 -1.33 16 11 C -0.09 -0.53 10.04 -39.49 -0.40 -0.92 16 12 C -0.14 -0.73 10.03 -39.64 -0.40 -1.13 16 13 C -0.08 -0.51 9.53 -39.18 -0.37 -0.88 16 14 C -0.14 -1.24 5.86 -104.97 -0.62 -1.86 16 15 C 0.56 5.60 7.60 -12.33 -0.09 5.51 16 16 N -0.85 -5.21 8.82 30.53 0.27 -4.95 16 17 O -0.52 -7.40 12.68 5.32 0.07 -7.33 16 18 C -0.15 -2.79 3.35 -89.69 -0.30 -3.09 16 19 C 0.18 4.26 6.90 -2.83 -0.02 4.24 16 20 N -0.61 -16.42 3.70 -177.70 -0.66 -17.08 16 21 C -0.22 -6.44 10.70 -15.06 -0.16 -6.61 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.92 -28.05 11.39 55.49 0.63 -27.42 16 25 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 C 0.13 2.72 8.38 -2.97 -0.02 2.69 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.08 7.99 -51.93 -0.41 0.66 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 4.73 8.60 -40.82 -0.35 4.38 16 34 H 0.09 1.13 6.48 -51.93 -0.34 0.79 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.86 7.94 -51.93 -0.41 0.44 16 37 H 0.11 1.69 5.85 -51.92 -0.30 1.39 16 38 H 0.13 0.81 8.02 -52.48 -0.42 0.39 16 39 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.12 0.37 6.44 -52.49 -0.34 0.03 16 42 H 0.40 1.16 6.90 -40.82 -0.28 0.88 16 43 H 0.41 2.30 8.93 -40.82 -0.36 1.93 16 44 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.03 0.69 8.03 -51.93 -0.42 0.28 16 46 H 0.07 1.96 7.17 -51.93 -0.37 1.58 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 400.33 15.07 6.03 6.03 Total: -1.00 -37.42 400.33 -9.73 -47.15 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.33 Total: 5.80 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -3.54 Total: 1.14 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.02 Total: -60.12 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.15 Total: -17.69 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.42 -9.73 -47.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276453858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.075 kcal (2) G-P(sol) polarization free energy of solvation -37.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds