Wall clock time and date at job start Wed Apr 1 2020 03:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46952 * 2 1 4 4 N 1.46497 * 109.47225 * 240.00200 * 2 1 3 5 5 C 1.34773 * 120.00456 * 84.99582 * 4 2 1 6 6 O 1.21284 * 119.99726 * 0.02562 * 5 4 2 7 7 C 1.50694 * 120.00435 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47530 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47436 * 179.97438 * 8 7 5 10 10 C 1.37975 * 120.07505 * 102.01834 * 9 8 7 11 11 C 1.38337 * 120.14492 * 179.97438 * 10 9 8 12 12 C 1.38379 * 120.29489 * 0.02585 * 11 10 9 13 13 C 1.37941 * 120.14249 * 359.97309 * 12 11 10 14 14 C 1.39559 * 120.07101 * 281.74291 * 9 8 7 15 15 C 1.47840 * 120.14638 * 0.02562 * 14 9 8 16 16 N 1.34777 * 119.99989 * 174.21656 * 15 14 9 17 17 O 1.21553 * 120.00189 * 354.21219 * 15 14 9 18 18 C 1.52992 * 109.47397 * 119.99425 * 2 1 3 19 19 C 1.53948 * 113.74469 * 281.82707 * 18 2 1 20 20 N 1.47818 * 86.03348 * 222.08304 * 19 18 2 21 21 C 1.36939 * 134.45153 * 204.64264 * 20 19 18 22 22 H 1.08002 * 119.99932 * 179.86292 * 21 20 19 23 23 C 1.38816 * 120.00418 * 359.87026 * 21 20 19 24 24 N 1.31619 * 119.99876 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99976 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47452 * 59.99540 * 25 23 21 27 27 H 1.48507 * 109.46766 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47135 * 299.99443 * 25 23 21 29 29 C 1.47572 * 91.05515 * 24.54753 * 20 19 18 30 30 H 1.08997 * 109.47344 * 55.02813 * 1 2 3 31 31 H 1.09007 * 109.47312 * 295.02440 * 1 2 3 32 32 H 1.09002 * 109.47042 * 175.03039 * 1 2 3 33 33 H 0.97005 * 119.99713 * 264.99168 * 4 2 1 34 34 H 1.09005 * 109.46800 * 300.00065 * 7 5 4 35 35 H 1.08998 * 109.47262 * 59.99731 * 7 5 4 36 36 H 1.09000 * 109.47394 * 300.00159 * 8 7 5 37 37 H 1.09007 * 109.47167 * 59.99749 * 8 7 5 38 38 H 1.08004 * 119.92442 * 359.97438 * 10 9 8 39 39 H 1.07995 * 119.85059 * 179.97438 * 11 10 9 40 40 H 1.07992 * 119.93176 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.07319 * 180.02562 * 13 12 11 42 42 H 0.96998 * 120.00244 * 359.97438 * 16 15 14 43 43 H 0.97002 * 119.99858 * 180.02562 * 16 15 14 44 44 H 1.09005 * 112.94570 * 53.41872 * 18 2 1 45 45 H 1.09000 * 113.76855 * 336.34585 * 19 18 2 46 46 H 1.08998 * 113.76774 * 107.74546 * 19 18 2 47 47 H 0.96999 * 119.99982 * 180.02562 * 24 23 21 48 48 H 1.09001 * 113.77327 * 221.15471 * 29 20 19 49 49 H 1.08996 * 113.87391 * 89.76544 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8589 1.1586 -2.4115 7 6 2.6488 -0.7288 -3.5877 8 6 2.7009 0.2544 -4.7588 9 6 3.2033 -0.4559 -5.9892 10 6 2.3167 -0.8526 -6.9691 11 6 2.7763 -1.5043 -8.0995 12 6 4.1267 -1.7633 -8.2553 13 6 5.0237 -1.3721 -7.2831 14 6 4.5672 -0.7089 -6.1428 15 6 5.5236 -0.2819 -5.0994 16 7 6.8225 -0.6290 -5.1932 17 8 5.1385 0.3823 -4.1571 18 6 2.0400 -0.7211 1.2492 19 6 1.9744 0.1332 2.5283 20 7 3.3098 -0.4176 2.8416 21 6 4.0194 -0.6140 3.9962 22 1 5.0067 -1.0501 3.9557 23 6 3.4698 -0.2529 5.2187 24 7 2.2669 0.2789 5.2680 25 14 4.4381 -0.5202 6.7935 26 1 5.7079 0.2471 6.7303 27 1 3.6358 -0.0541 7.9530 28 1 4.7406 -1.9657 6.9493 29 6 3.5702 -0.6728 1.4116 30 1 -0.3634 0.5890 -0.8421 31 1 -0.3634 0.4347 0.9312 32 1 -0.3633 -1.0238 -0.0890 33 1 2.2491 -1.6317 -1.1526 34 1 3.6480 -1.1213 -3.3985 35 1 1.9760 -1.5506 -3.8325 36 1 1.7020 0.6474 -4.9481 37 1 3.3741 1.0761 -4.5137 38 1 1.2614 -0.6538 -6.8534 39 1 2.0781 -1.8130 -8.8633 40 1 4.4791 -2.2729 -9.1398 41 1 6.0775 -1.5745 -7.4061 42 1 7.1298 -1.1593 -5.9450 43 1 7.4500 -0.3491 -4.5084 44 1 1.6177 -1.7192 1.3660 45 1 1.9750 1.2068 2.3400 46 1 1.1954 -0.1775 3.2245 47 1 1.8830 0.5316 6.1222 48 1 4.0628 -1.6256 1.2178 49 1 4.0407 0.1624 0.8930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276453858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:27 Heat of formation + Delta-G solvation = -28.467396 kcal Electronic energy + Delta-G solvation = -29751.525300 eV Core-core repulsion = 25678.755559 eV Total energy + Delta-G solvation = -4072.769740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.48857 -40.86525 -39.62319 -39.07044 -36.22460 -35.41365 -34.30612 -34.13703 -32.11000 -31.78224 -30.42355 -29.32749 -26.73027 -26.08049 -25.52592 -24.63027 -22.94975 -22.29264 -21.47363 -21.30451 -20.58984 -18.87035 -18.80322 -18.01042 -17.75016 -17.29626 -16.86089 -16.70129 -16.43405 -16.00067 -15.87990 -15.75241 -15.60349 -15.37672 -14.87257 -14.80922 -14.50315 -14.17004 -13.93126 -13.76022 -13.60893 -13.32025 -13.27290 -13.11919 -12.96112 -12.76824 -12.66381 -12.57446 -12.39862 -12.14120 -12.02886 -11.88371 -11.80990 -11.58575 -11.24578 -10.87829 -10.83397 -10.65877 -10.58521 -9.98836 -9.89475 -9.65923 -8.95068 -7.91937 -5.26313 -0.08289 0.43081 1.43372 1.47857 1.53966 1.76132 1.93553 2.26684 2.46161 2.60199 2.92068 3.27378 3.36974 3.62969 3.80081 3.86238 3.94844 3.96290 4.06374 4.14041 4.26251 4.31766 4.37086 4.45780 4.52893 4.55410 4.57920 4.70718 4.73746 4.83657 4.85936 4.89834 4.94195 4.97692 5.10669 5.12531 5.21896 5.29312 5.30661 5.39016 5.50770 5.55619 5.59081 5.63820 5.66198 5.91514 5.93709 5.99752 6.48436 6.67769 6.89747 7.36340 7.38563 7.58307 8.54624 9.25017 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.002121 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.933981 B =13197.181832 C =14339.298930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 H 0.052 0.948 4 N -0.711 5.711 5 C 0.514 3.486 6 O -0.588 6.588 7 C -0.111 4.111 8 C -0.069 4.069 9 C -0.038 4.038 10 C -0.134 4.134 11 C -0.087 4.087 12 C -0.132 4.132 13 C -0.080 4.080 14 C -0.158 4.158 15 C 0.548 3.452 16 N -0.835 5.835 17 O -0.571 6.571 18 C -0.107 4.107 19 C 0.171 3.829 20 N -0.643 5.643 21 C -0.240 4.240 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.983 3.017 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.272 1.272 29 C 0.128 3.872 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.413 0.587 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.415 0.585 43 H 0.409 0.591 44 H 0.108 0.892 45 H 0.008 0.992 46 H 0.049 0.951 47 H 0.250 0.750 48 H 0.061 0.939 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 -10.346 -33.762 35.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.055 3.945 3 H 0.070 0.930 4 N -0.363 5.363 5 C 0.302 3.698 6 O -0.468 6.468 7 C -0.150 4.150 8 C -0.107 4.107 9 C -0.039 4.039 10 C -0.152 4.152 11 C -0.105 4.105 12 C -0.149 4.149 13 C -0.098 4.098 14 C -0.162 4.162 15 C 0.335 3.665 16 N -0.399 5.399 17 O -0.452 6.452 18 C -0.127 4.127 19 C 0.046 3.954 20 N -0.370 5.370 21 C -0.368 4.368 22 H 0.101 0.899 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.810 3.190 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.197 1.197 29 C 0.003 3.997 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.249 0.751 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.156 0.844 39 H 0.171 0.829 40 H 0.176 0.824 41 H 0.173 0.827 42 H 0.248 0.752 43 H 0.241 0.759 44 H 0.126 0.874 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.865 -9.115 -32.937 34.295 hybrid contribution 1.033 0.165 1.405 1.751 sum 3.898 -8.950 -31.533 33.009 Atomic orbital electron populations 1.22022 0.93924 1.02954 1.01841 1.20714 0.94825 0.95611 0.83355 0.92989 1.45958 1.66933 1.14548 1.08818 1.21175 0.76208 0.86918 0.85480 1.90656 1.52165 1.18112 1.85882 1.21452 1.03267 0.99238 0.91067 1.20409 1.01403 0.97945 0.90926 1.20007 0.92563 0.95606 0.95696 1.21308 1.00211 0.99658 0.94029 1.21744 0.96795 0.95096 0.96838 1.21510 0.93050 1.00446 0.99929 1.21606 1.01522 0.94891 0.91808 1.19809 0.93323 1.05773 0.97255 1.18713 0.83590 0.78841 0.85309 1.43666 1.08636 1.57300 1.30343 1.90871 1.78540 1.40464 1.35297 1.23443 0.95770 1.00429 0.93080 1.22125 0.88233 0.93542 0.91547 1.46442 1.17326 1.72105 1.01122 1.19412 0.98842 1.34368 0.84162 0.89939 1.25698 0.98228 1.01453 1.00841 1.70003 1.16944 1.48528 1.24798 0.85096 0.77338 0.78203 0.78347 1.20626 1.21866 1.19716 1.22631 0.95058 0.98142 0.83899 0.93082 0.91888 0.90447 0.75112 0.88915 0.86691 0.91522 0.90658 0.84363 0.82890 0.82363 0.82691 0.75248 0.75937 0.87386 0.97460 0.93232 0.94147 0.92048 0.95774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.46 71.98 0.68 -3.77 16 2 C 0.16 5.44 2.29 44.99 0.10 5.55 16 3 H 0.05 2.15 7.48 -2.38 -0.02 2.13 16 4 N -0.71 -20.04 4.94 -442.56 -2.19 -22.23 16 5 C 0.51 16.02 7.79 87.66 0.68 16.70 16 6 O -0.59 -23.72 15.64 -3.04 -0.05 -23.77 16 7 C -0.11 -2.59 5.21 29.84 0.16 -2.43 16 8 C -0.07 -1.73 3.91 29.85 0.12 -1.61 16 9 C -0.04 -0.70 5.18 -19.61 -0.10 -0.80 16 10 C -0.13 -1.79 9.66 22.23 0.21 -1.57 16 11 C -0.09 -0.72 10.04 22.33 0.22 -0.50 16 12 C -0.13 -0.88 10.03 22.23 0.22 -0.65 16 13 C -0.08 -0.70 9.53 22.53 0.21 -0.49 16 14 C -0.16 -2.62 5.86 -20.09 -0.12 -2.73 16 15 C 0.55 11.05 7.60 86.78 0.66 11.71 16 16 N -0.83 -9.25 8.82 -175.61 -1.55 -10.80 16 17 O -0.57 -17.31 12.68 -3.88 -0.05 -17.36 16 18 C -0.11 -4.07 3.35 -10.13 -0.03 -4.10 16 19 C 0.17 8.61 6.90 86.44 0.60 9.21 16 20 N -0.64 -35.04 3.70 -716.11 -2.65 -37.69 16 21 C -0.24 -14.09 10.70 84.03 0.90 -13.19 16 22 H 0.08 4.62 7.83 -2.91 -0.02 4.59 16 23 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 24 N -0.95 -59.58 11.39 21.65 0.25 -59.33 16 25 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 29 C 0.13 5.49 8.38 86.49 0.72 6.21 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.96 7.99 -2.38 -0.02 1.94 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.41 9.00 8.60 -92.70 -0.80 8.21 16 34 H 0.09 2.24 6.48 -2.38 -0.02 2.22 16 35 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 1.65 7.94 -2.39 -0.02 1.63 16 37 H 0.08 2.48 5.85 -2.38 -0.01 2.46 16 38 H 0.14 1.52 8.02 -2.91 -0.02 1.50 16 39 H 0.15 0.45 8.06 -2.91 -0.02 0.43 16 40 H 0.16 0.09 8.06 -2.91 -0.02 0.07 16 41 H 0.16 0.28 6.44 -2.91 -0.02 0.26 16 42 H 0.42 1.42 6.90 -92.71 -0.64 0.78 16 43 H 0.41 4.35 8.93 -92.71 -0.83 3.52 16 44 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 45 H 0.01 0.40 8.03 -2.39 -0.02 0.38 16 46 H 0.05 2.72 7.17 -2.39 -0.02 2.70 16 47 H 0.25 15.10 8.31 -92.71 -0.77 14.32 16 48 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 49 H 0.02 1.10 8.10 -2.39 -0.02 1.08 16 Total: -1.00 -86.06 400.33 0.23 -85.83 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -1.26 Total: 22.32 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 5.71 Total: 13.88 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -6.14 Total: -130.05 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.10 Total: -41.13 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -86.06 0.23 -85.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276453858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.362 kcal (2) G-P(sol) polarization free energy of solvation -86.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds