Wall clock time and date at job start Wed Apr 1 2020 04:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99868 * 2 1 3 5 5 C 1.52995 * 109.47310 * 184.99992 * 4 2 1 6 6 C 1.53001 * 109.47042 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46820 * 179.97438 * 6 5 4 8 8 C 1.36940 * 119.99554 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00163 * 0.02562 * 8 7 6 10 10 C 1.38818 * 119.99701 * 179.97438 * 8 7 6 11 11 N 1.31621 * 120.00097 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99855 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47024 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47008 * 119.99882 * 12 10 8 15 15 H 1.48496 * 109.46784 * 240.00077 * 12 10 8 16 16 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 17 17 C 1.34777 * 120.00271 * 84.99619 * 16 2 1 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 2 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 2 20 20 N 1.46505 * 109.47064 * 180.02562 * 19 17 16 21 21 C 1.46734 * 125.61936 * 89.99947 * 20 19 17 22 22 C 1.50830 * 106.24771 * 179.97438 * 21 20 19 23 23 C 1.37584 * 133.24320 * 180.02562 * 22 21 20 24 24 C 1.38464 * 119.95649 * 179.97438 * 23 22 21 25 25 C 1.38379 * 120.19335 * 0.02562 * 24 23 22 26 26 C 1.37937 * 120.31960 * 359.97438 * 25 24 23 27 27 C 1.39623 * 119.82515 * 0.02562 * 26 25 24 28 28 C 1.34414 * 125.62459 * 269.69637 * 20 19 17 29 29 O 1.21550 * 124.85534 * 359.97438 * 28 20 19 30 30 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 31 31 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 33 33 H 1.09001 * 109.46658 * 305.00004 * 4 2 1 34 34 H 1.08998 * 109.46554 * 64.99605 * 4 2 1 35 35 H 1.09001 * 109.47269 * 299.99637 * 5 4 2 36 36 H 1.08990 * 109.47497 * 59.99628 * 5 4 2 37 37 H 1.08996 * 109.47019 * 299.99700 * 6 5 4 38 38 H 1.08994 * 109.47383 * 60.00112 * 6 5 4 39 39 H 0.96999 * 120.00155 * 359.97438 * 7 6 5 40 40 H 0.96999 * 119.99852 * 179.97438 * 11 10 8 41 41 H 0.97005 * 120.00266 * 265.00202 * 16 2 1 42 42 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 43 43 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 44 44 H 1.08996 * 110.10150 * 299.17654 * 21 20 19 45 45 H 1.08999 * 110.09959 * 60.72475 * 21 20 19 46 46 H 1.07999 * 120.01355 * 0.02562 * 23 22 21 47 47 H 1.08003 * 119.90511 * 180.02562 * 24 23 22 48 48 H 1.07995 * 119.84451 * 179.97438 * 25 24 23 49 49 H 1.08001 * 120.09117 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5626 7 7 5.5350 -1.2321 2.6239 8 6 6.2188 -1.8065 3.6621 9 1 5.6817 -2.3356 4.4354 10 6 7.6024 -1.7094 3.7199 11 7 8.2569 -1.0650 2.7772 12 14 8.5352 -2.4935 5.1357 13 1 7.5747 -3.1529 6.0565 14 1 9.4848 -3.5036 4.6037 15 1 9.2875 -1.4466 5.8728 16 7 2.0183 -0.6906 -1.1961 17 6 2.1469 -0.0183 -2.3572 18 8 1.8589 1.1585 -2.4115 19 6 2.6487 -0.7289 -3.5878 20 7 2.6986 0.2126 -4.7091 21 6 3.8482 1.0491 -5.0722 22 6 3.4269 1.8425 -6.2837 23 6 4.0633 2.7795 -7.0648 24 6 3.4014 3.3480 -8.1400 25 6 2.1006 2.9770 -8.4316 26 6 1.4534 2.0386 -7.6549 27 6 2.1141 1.4608 -6.5691 28 6 1.7009 0.4484 -5.5784 29 8 0.6131 -0.0932 -5.5509 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -0.2616 2.1369 34 1 1.7516 -1.7714 1.2056 35 1 3.9994 -1.0728 0.4260 36 1 3.8532 0.4369 1.3572 37 1 3.6403 -0.8759 3.4505 38 1 3.7866 -2.3852 2.5185 39 1 6.0173 -0.7572 1.9292 40 1 9.2236 -0.9969 2.8179 41 1 2.2490 -1.6318 -1.1526 42 1 1.9758 -1.5507 -3.8326 43 1 3.6478 -1.1215 -3.3986 44 1 4.0960 1.7219 -4.2513 45 1 4.7063 0.4219 -5.3140 46 1 5.0787 3.0707 -6.8398 47 1 3.9019 4.0831 -8.7528 48 1 1.5895 3.4243 -9.2713 49 1 0.4382 1.7514 -7.8861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277342898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:14 Heat of formation + Delta-G solvation = -25.279551 kcal Electronic energy + Delta-G solvation = -29074.284700 eV Core-core repulsion = 25001.653194 eV Total energy + Delta-G solvation = -4072.631505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.49818 -39.86048 -38.35516 -36.88798 -36.18597 -34.85210 -32.86321 -32.30728 -31.47542 -31.09853 -29.44800 -28.08074 -26.99334 -25.68001 -23.75103 -22.97299 -22.07083 -21.45535 -20.84135 -20.62851 -20.07536 -17.66045 -17.33769 -17.16153 -17.03595 -16.54883 -16.03450 -15.70300 -15.28082 -14.84541 -14.68966 -14.58692 -14.37987 -14.00820 -13.87497 -13.66619 -13.59358 -13.52910 -13.49699 -13.02398 -12.84400 -12.74662 -12.30128 -12.20931 -12.19078 -12.10719 -11.46205 -11.32995 -11.17161 -10.89160 -10.83123 -10.49589 -10.43401 -10.29504 -10.16785 -10.00550 -9.71321 -9.46462 -9.29608 -9.15251 -8.95354 -8.89102 -6.93499 -5.78558 -3.07032 0.42663 0.89657 2.24122 2.48906 2.53596 3.15093 3.41541 3.47167 3.48972 3.49464 3.72249 4.07052 4.48087 4.50268 4.57472 4.58719 4.72635 4.78226 4.87701 4.89424 5.00224 5.04575 5.07192 5.11163 5.13966 5.32535 5.41787 5.53205 5.55530 5.56195 5.63263 5.71722 5.77374 5.88989 5.94013 5.98448 6.07605 6.09482 6.15290 6.19159 6.33577 6.38540 6.40864 6.45633 6.63800 6.84189 6.87790 7.36997 7.68669 7.83819 8.10133 8.40731 9.51649 10.10476 10.44779 11.44534 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.001950 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.289601 B =14353.241123 C =15964.363346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.124 4.124 6 C 0.152 3.848 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.719 5.719 17 C 0.495 3.505 18 O -0.531 6.531 19 C 0.116 3.884 20 N -0.597 5.597 21 C 0.141 3.859 22 C -0.076 4.076 23 C -0.103 4.103 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.046 4.046 27 C -0.154 4.154 28 C 0.566 3.434 29 O -0.525 6.525 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.402 0.598 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 5.428 -22.793 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.162 4.162 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.371 5.371 17 C 0.279 3.721 18 O -0.407 6.407 19 C -0.009 4.009 20 N -0.329 5.329 21 C 0.018 3.982 22 C -0.078 4.078 23 C -0.121 4.121 24 C -0.106 4.106 25 C -0.147 4.147 26 C -0.065 4.065 27 C -0.157 4.157 28 C 0.355 3.645 29 O -0.402 6.402 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.236 0.764 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.150 0.850 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.620 5.820 -22.547 26.977 hybrid contribution 0.930 -0.664 0.716 1.349 sum -12.690 5.156 -21.831 25.772 Atomic orbital electron populations 1.22168 0.95429 1.02066 1.02408 1.21039 0.93630 0.97718 0.83773 0.89418 1.21854 0.96860 1.00821 0.96584 1.21721 0.93629 1.01389 0.99486 1.20655 0.86166 0.96471 0.94253 1.42385 1.00196 1.66249 1.29023 1.19300 0.89450 1.26958 1.01278 0.91138 1.24758 0.96464 1.01279 0.98699 1.69672 1.07119 1.47121 1.34397 0.86106 0.79882 0.78497 0.81662 1.20550 1.21864 1.21861 1.46064 1.67308 1.14197 1.09573 1.21080 0.78139 0.87933 0.84914 1.90718 1.49339 1.15880 1.84734 1.21212 1.04816 0.91296 0.83600 1.47289 1.15320 1.42120 1.28180 1.20540 0.88933 0.93353 0.95330 1.20460 0.94856 0.96461 0.95984 1.20338 1.00553 0.96228 0.95023 1.21339 0.94624 0.98426 0.96247 1.21135 0.95282 0.98080 1.00250 1.20871 0.99779 0.93958 0.91937 1.20359 0.96241 1.00696 0.98439 1.18228 0.83509 0.81555 0.81186 1.90772 1.21790 1.53298 1.74306 0.92372 0.92465 0.91560 0.90266 0.91345 0.92086 0.92013 0.96488 0.96525 0.78375 0.93583 0.76368 0.86518 0.86387 0.88041 0.88208 0.84902 0.84920 0.84987 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.37 16 2 C 0.14 1.63 2.57 -67.93 -0.17 1.45 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 C -0.12 -1.41 4.75 -26.73 -0.13 -1.54 16 5 C -0.12 -1.88 5.22 -26.73 -0.14 -2.02 16 6 C 0.15 2.98 6.26 -4.04 -0.03 2.96 16 7 N -0.73 -18.64 5.60 -59.91 -0.34 -18.97 16 8 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 11 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 12 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 N -0.72 -7.49 4.53 -53.81 -0.24 -7.73 16 17 C 0.50 6.04 7.86 -10.98 -0.09 5.95 16 18 O -0.53 -8.70 16.09 5.56 0.09 -8.61 16 19 C 0.12 1.07 6.54 -5.19 -0.03 1.04 16 20 N -0.60 -6.58 2.45 -177.51 -0.44 -7.01 16 21 C 0.14 1.21 7.38 -5.00 -0.04 1.17 16 22 C -0.08 -0.69 6.38 -104.26 -0.66 -1.36 16 23 C -0.10 -0.71 10.03 -39.74 -0.40 -1.11 16 24 C -0.09 -0.53 10.05 -39.45 -0.40 -0.93 16 25 C -0.13 -0.87 10.02 -39.64 -0.40 -1.27 16 26 C -0.05 -0.43 10.10 -39.17 -0.40 -0.82 16 27 C -0.15 -1.72 6.26 -105.05 -0.66 -2.38 16 28 C 0.57 7.64 7.97 -12.62 -0.10 7.54 16 29 O -0.52 -8.73 17.71 5.32 0.09 -8.64 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 40 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.40 3.21 8.60 -40.82 -0.35 2.85 16 42 H 0.12 0.97 8.00 -51.93 -0.42 0.55 16 43 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 48 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 49 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 414.23 15.07 6.24 6.24 Total: -1.00 -37.79 414.23 -10.18 -47.97 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.76 Total: 7.03 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -3.53 Total: -0.12 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.29 Total: -61.22 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.18 Total: -17.25 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -37.79 -10.18 -47.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277342898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.689 kcal (2) G-P(sol) polarization free energy of solvation -37.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds