Wall clock time and date at job start Wed Apr 1 2020 04:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99868 * 2 1 3 5 5 C 1.52995 * 109.47310 * 184.99992 * 4 2 1 6 6 C 1.53001 * 109.47042 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46820 * 179.97438 * 6 5 4 8 8 C 1.36940 * 119.99554 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00163 * 0.02562 * 8 7 6 10 10 C 1.38818 * 119.99701 * 179.97438 * 8 7 6 11 11 N 1.31621 * 120.00097 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99855 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47024 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47008 * 119.99882 * 12 10 8 15 15 H 1.48496 * 109.46784 * 240.00077 * 12 10 8 16 16 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 17 17 C 1.34777 * 120.00271 * 84.99619 * 16 2 1 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 2 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 2 20 20 N 1.46505 * 109.47064 * 180.02562 * 19 17 16 21 21 C 1.46734 * 125.61936 * 89.99947 * 20 19 17 22 22 C 1.50830 * 106.24771 * 179.97438 * 21 20 19 23 23 C 1.37584 * 133.24320 * 180.02562 * 22 21 20 24 24 C 1.38464 * 119.95649 * 179.97438 * 23 22 21 25 25 C 1.38379 * 120.19335 * 0.02562 * 24 23 22 26 26 C 1.37937 * 120.31960 * 359.97438 * 25 24 23 27 27 C 1.39623 * 119.82515 * 0.02562 * 26 25 24 28 28 C 1.34414 * 125.62459 * 269.69637 * 20 19 17 29 29 O 1.21550 * 124.85534 * 359.97438 * 28 20 19 30 30 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 31 31 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 33 33 H 1.09001 * 109.46658 * 305.00004 * 4 2 1 34 34 H 1.08998 * 109.46554 * 64.99605 * 4 2 1 35 35 H 1.09001 * 109.47269 * 299.99637 * 5 4 2 36 36 H 1.08990 * 109.47497 * 59.99628 * 5 4 2 37 37 H 1.08996 * 109.47019 * 299.99700 * 6 5 4 38 38 H 1.08994 * 109.47383 * 60.00112 * 6 5 4 39 39 H 0.96999 * 120.00155 * 359.97438 * 7 6 5 40 40 H 0.96999 * 119.99852 * 179.97438 * 11 10 8 41 41 H 0.97005 * 120.00266 * 265.00202 * 16 2 1 42 42 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 43 43 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 44 44 H 1.08996 * 110.10150 * 299.17654 * 21 20 19 45 45 H 1.08999 * 110.09959 * 60.72475 * 21 20 19 46 46 H 1.07999 * 120.01355 * 0.02562 * 23 22 21 47 47 H 1.08003 * 119.90511 * 180.02562 * 24 23 22 48 48 H 1.07995 * 119.84451 * 179.97438 * 25 24 23 49 49 H 1.08001 * 120.09117 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5626 7 7 5.5350 -1.2321 2.6239 8 6 6.2188 -1.8065 3.6621 9 1 5.6817 -2.3356 4.4354 10 6 7.6024 -1.7094 3.7199 11 7 8.2569 -1.0650 2.7772 12 14 8.5352 -2.4935 5.1357 13 1 7.5747 -3.1529 6.0565 14 1 9.4848 -3.5036 4.6037 15 1 9.2875 -1.4466 5.8728 16 7 2.0183 -0.6906 -1.1961 17 6 2.1469 -0.0183 -2.3572 18 8 1.8589 1.1585 -2.4115 19 6 2.6487 -0.7289 -3.5878 20 7 2.6986 0.2126 -4.7091 21 6 3.8482 1.0491 -5.0722 22 6 3.4269 1.8425 -6.2837 23 6 4.0633 2.7795 -7.0648 24 6 3.4014 3.3480 -8.1400 25 6 2.1006 2.9770 -8.4316 26 6 1.4534 2.0386 -7.6549 27 6 2.1141 1.4608 -6.5691 28 6 1.7009 0.4484 -5.5784 29 8 0.6131 -0.0932 -5.5509 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -0.2616 2.1369 34 1 1.7516 -1.7714 1.2056 35 1 3.9994 -1.0728 0.4260 36 1 3.8532 0.4369 1.3572 37 1 3.6403 -0.8759 3.4505 38 1 3.7866 -2.3852 2.5185 39 1 6.0173 -0.7572 1.9292 40 1 9.2236 -0.9969 2.8179 41 1 2.2490 -1.6318 -1.1526 42 1 1.9758 -1.5507 -3.8326 43 1 3.6478 -1.1215 -3.3986 44 1 4.0960 1.7219 -4.2513 45 1 4.7063 0.4219 -5.3140 46 1 5.0787 3.0707 -6.8398 47 1 3.9019 4.0831 -8.7528 48 1 1.5895 3.4243 -9.2713 49 1 0.4382 1.7514 -7.8861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277342898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:13 Heat of formation + Delta-G solvation = -50.673893 kcal Electronic energy + Delta-G solvation = -29075.385881 eV Core-core repulsion = 25001.653194 eV Total energy + Delta-G solvation = -4073.732686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.27952 -40.80446 -39.13503 -38.02933 -37.12881 -36.47367 -34.22981 -33.36109 -32.37261 -32.07184 -30.89888 -28.81490 -27.72759 -27.23396 -24.93517 -24.25229 -22.71452 -22.53456 -22.13255 -21.59326 -20.91590 -19.12799 -18.55607 -18.06655 -18.02125 -17.35647 -16.80714 -16.69628 -16.46293 -16.20309 -15.78147 -15.51201 -15.38237 -15.24940 -15.17224 -14.83530 -14.64018 -14.46709 -14.41502 -14.07312 -13.96007 -13.44695 -13.36174 -13.24719 -13.07596 -13.04449 -12.80675 -12.77885 -12.39620 -12.22935 -12.06041 -12.04787 -11.86431 -11.72291 -11.50814 -11.30388 -11.10538 -10.93893 -10.20916 -10.11925 -9.93173 -9.68915 -8.99653 -7.95825 -5.24562 -0.25281 0.32227 1.44868 1.47708 1.48473 1.54231 1.58628 1.74630 2.30531 2.55886 2.80582 3.06602 3.36548 3.38052 3.58957 3.76592 3.89615 3.97131 4.06155 4.10837 4.16408 4.22716 4.28426 4.32211 4.38663 4.42072 4.46644 4.50573 4.57854 4.66923 4.76085 4.79763 4.87460 4.90468 4.95366 4.98691 5.06331 5.11488 5.26275 5.35909 5.37719 5.42238 5.43888 5.46974 5.51446 5.56601 5.77738 5.89874 6.27379 6.49887 6.91502 7.20120 7.33033 8.10272 8.32391 9.28042 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.001950 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.289601 B =14353.241123 C =15964.363346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.111 4.111 6 C 0.149 3.851 7 N -0.749 5.749 8 C -0.246 4.246 9 H 0.076 0.924 10 C -0.078 4.078 11 N -0.970 5.970 12 Si 0.974 3.026 13 H -0.266 1.266 14 H -0.291 1.291 15 H -0.294 1.294 16 N -0.709 5.709 17 C 0.491 3.509 18 O -0.580 6.580 19 C 0.114 3.886 20 N -0.597 5.597 21 C 0.137 3.863 22 C -0.082 4.082 23 C -0.104 4.104 24 C -0.079 4.079 25 C -0.128 4.128 26 C -0.064 4.064 27 C -0.193 4.193 28 C 0.551 3.449 29 O -0.576 6.576 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.017 0.983 38 H 0.027 0.973 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.416 0.584 42 H 0.126 0.874 43 H 0.156 0.844 44 H 0.098 0.902 45 H 0.132 0.868 46 H 0.161 0.839 47 H 0.168 0.832 48 H 0.160 0.840 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 5.086 -23.098 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.149 4.149 6 C 0.023 3.977 7 N -0.392 5.392 8 C -0.378 4.378 9 H 0.094 0.906 10 C -0.270 4.270 11 N -0.621 5.621 12 Si 0.803 3.197 13 H -0.190 1.190 14 H -0.219 1.219 15 H -0.221 1.221 16 N -0.362 5.362 17 C 0.277 3.723 18 O -0.459 6.459 19 C -0.011 4.011 20 N -0.327 5.327 21 C 0.016 3.984 22 C -0.083 4.083 23 C -0.122 4.122 24 C -0.097 4.097 25 C -0.145 4.145 26 C -0.083 4.083 27 C -0.196 4.196 28 C 0.342 3.658 29 O -0.457 6.457 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.045 0.955 39 H 0.204 0.796 40 H 0.060 0.940 41 H 0.254 0.746 42 H 0.144 0.856 43 H 0.174 0.826 44 H 0.116 0.884 45 H 0.149 0.851 46 H 0.178 0.822 47 H 0.186 0.814 48 H 0.177 0.823 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.900 5.438 -22.822 26.774 hybrid contribution 0.678 -0.500 0.792 1.156 sum -12.222 4.938 -22.031 25.673 Atomic orbital electron populations 1.22096 0.94492 1.02919 1.01838 1.20918 0.94251 0.96577 0.84112 0.91924 1.21735 0.93876 1.02224 0.96803 1.21571 0.96110 0.99694 0.97494 1.20862 0.83170 0.97470 0.96225 1.42637 1.02492 1.65902 1.28153 1.19709 0.90005 1.26259 1.01794 0.90592 1.25600 0.97530 1.02501 1.01416 1.69821 1.07052 1.48855 1.36345 0.85058 0.78468 0.77365 0.78784 1.19006 1.21855 1.22148 1.46005 1.66452 1.14812 1.08909 1.21619 0.77304 0.87449 0.85936 1.90697 1.51589 1.18091 1.85542 1.21458 1.06983 0.90814 0.81834 1.47500 1.15446 1.42044 1.27756 1.20754 0.88909 0.93623 0.95127 1.20665 0.94115 0.97146 0.96414 1.20744 1.01735 0.95156 0.94611 1.21821 0.94147 0.97968 0.95739 1.21484 0.95784 0.96955 1.00301 1.21064 0.99979 0.95002 0.92265 1.20436 0.97845 1.01816 0.99517 1.18802 0.83267 0.81696 0.82078 1.90711 1.23688 1.55370 1.75924 0.94760 0.90834 0.90335 0.89403 0.89199 0.91746 0.93639 0.96505 0.95538 0.79586 0.93981 0.74644 0.85624 0.82621 0.88440 0.85054 0.82187 0.81414 0.82264 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.48 71.98 0.68 -2.48 16 2 C 0.15 3.23 2.57 44.99 0.12 3.35 16 3 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 4 C -0.11 -2.26 4.75 30.59 0.15 -2.12 16 5 C -0.11 -3.23 5.22 30.59 0.16 -3.07 16 6 C 0.15 5.64 6.26 86.38 0.54 6.18 16 7 N -0.75 -37.78 5.60 -343.45 -1.92 -39.71 16 8 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 9 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 11 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 12 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 13 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 15 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 16 N -0.71 -14.20 4.53 -442.54 -2.00 -16.21 16 17 C 0.49 12.11 7.86 87.66 0.69 12.80 16 18 O -0.58 -19.89 16.09 -3.02 -0.05 -19.94 16 19 C 0.11 2.06 6.54 85.63 0.56 2.62 16 20 N -0.60 -13.44 2.45 -833.98 -2.05 -15.49 16 21 C 0.14 2.28 7.38 85.63 0.63 2.92 16 22 C -0.08 -1.45 6.38 -19.63 -0.13 -1.57 16 23 C -0.10 -1.21 10.03 22.17 0.22 -0.99 16 24 C -0.08 -0.73 10.05 22.36 0.22 -0.51 16 25 C -0.13 -1.52 10.02 22.23 0.22 -1.30 16 26 C -0.06 -1.23 10.10 22.53 0.23 -1.00 16 27 C -0.19 -4.52 6.26 -20.14 -0.13 -4.65 16 28 C 0.55 15.89 7.97 86.76 0.69 16.58 16 29 O -0.58 -20.78 17.71 -3.87 -0.07 -20.85 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.83 7.75 -2.39 -0.02 1.81 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.37 20.00 7.67 -92.71 -0.71 19.29 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.42 5.87 8.60 -92.70 -0.80 5.07 16 42 H 0.13 2.06 8.00 -2.39 -0.02 2.04 16 43 H 0.16 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 47 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 48 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 49 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -85.29 414.23 1.84 -83.45 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.54 Total: 29.79 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.17 Total: 9.91 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -5.69 Total: -130.12 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.12 Total: -40.79 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -85.29 1.84 -83.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277342898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.775 kcal (2) G-P(sol) polarization free energy of solvation -85.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds