Wall clock time and date at job start Wed Apr 1 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47408 * 2 1 4 4 N 1.46499 * 109.47377 * 239.99599 * 2 1 3 5 5 C 1.36941 * 119.99959 * 84.99777 * 4 2 1 6 6 H 1.07997 * 119.99942 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99902 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99833 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46917 * 90.00212 * 9 7 5 11 11 H 1.48505 * 109.46745 * 209.99936 * 9 7 5 12 12 H 1.48495 * 109.47163 * 330.00032 * 9 7 5 13 13 C 1.50706 * 109.47163 * 119.99715 * 2 1 3 14 14 C 1.38228 * 119.99983 * 80.21409 * 13 2 1 15 15 C 1.38238 * 120.00110 * 180.21781 * 14 13 2 16 16 C 1.38234 * 119.99675 * 359.52133 * 15 14 13 17 17 C 1.50702 * 120.00257 * 180.25732 * 16 15 14 18 18 N 1.46505 * 109.46804 * 90.00184 * 17 16 15 19 19 C 1.34780 * 119.99957 * 180.02562 * 18 17 16 20 20 O 1.21348 * 119.99846 * 0.02562 * 19 18 17 21 21 C 1.49445 * 120.00109 * 179.97438 * 19 18 17 22 22 O 1.21351 * 119.99872 * 0.02562 * 21 19 18 23 23 N 1.34780 * 120.00109 * 180.02562 * 21 19 18 24 24 C 1.46504 * 119.99776 * 180.02562 * 23 21 19 25 25 C 1.52999 * 109.46834 * 180.02562 * 24 23 21 26 26 C 1.52997 * 117.49837 * 243.62059 * 25 24 23 27 27 C 1.52997 * 60.00055 * 252.51035 * 26 25 24 28 28 C 1.38235 * 120.00220 * 0.28720 * 16 15 14 29 29 C 1.38234 * 119.99892 * 259.99629 * 13 2 1 30 30 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47119 * 300.00248 * 1 2 3 32 32 H 1.08997 * 109.47560 * 60.00135 * 1 2 3 33 33 H 0.97002 * 120.00040 * 265.00513 * 4 2 1 34 34 H 0.96997 * 120.00389 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.00281 * 0.02562 * 14 13 2 36 36 H 1.08002 * 120.00519 * 179.80752 * 15 14 13 37 37 H 1.08993 * 109.47429 * 210.00613 * 17 16 15 38 38 H 1.08998 * 109.46961 * 330.00864 * 17 16 15 39 39 H 0.96997 * 120.00105 * 0.02562 * 18 17 16 40 40 H 0.96997 * 119.99939 * 0.02562 * 23 21 19 41 41 H 1.09005 * 109.46972 * 299.99660 * 24 23 21 42 42 H 1.08998 * 109.47193 * 60.00161 * 24 23 21 43 43 H 1.09005 * 115.54875 * 29.32898 * 25 24 23 44 44 H 1.08997 * 117.50120 * 359.97438 * 26 25 24 45 45 H 1.09005 * 117.50203 * 145.01934 * 26 25 24 46 46 H 1.09003 * 117.50092 * 252.51353 * 27 26 25 47 47 H 1.09000 * 117.50110 * 107.48630 * 27 26 25 48 48 H 1.07996 * 120.00471 * 179.97438 * 28 16 15 49 49 H 1.08001 * 120.00324 * 0.02562 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8926 1.0403 -2.4242 7 6 2.6114 -0.6622 -3.5092 8 7 2.7375 -0.0055 -4.6429 9 14 3.0557 -2.4746 -3.4252 10 1 1.8583 -3.2931 -3.7439 11 1 4.1308 -2.7667 -4.4072 12 1 3.5313 -2.8048 -2.0577 13 6 2.0323 -0.7104 1.2305 14 6 2.0709 -2.0917 1.2638 15 6 2.5274 -2.7434 2.3942 16 6 2.9547 -2.0135 3.4876 17 6 3.4579 -2.7238 4.7178 18 7 4.9031 -2.9351 4.6028 19 6 5.5741 -3.5567 5.5927 20 8 4.9812 -3.9417 6.5790 21 6 7.0482 -3.7728 5.4752 22 8 7.6410 -3.3881 4.4887 23 7 7.7191 -4.3948 6.4649 24 6 9.1643 -4.6061 6.3499 25 6 9.6749 -5.3289 7.5979 26 6 10.6699 -4.5827 8.4890 27 6 11.1462 -5.7479 7.6193 28 6 2.9199 -0.6320 3.4529 29 6 2.4588 0.0195 2.3243 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6319 -1.1525 34 1 3.0602 -0.4629 -5.4351 35 1 1.7414 -2.6620 0.4078 36 1 2.5547 -3.8227 2.4214 37 1 3.2483 -2.1173 5.5988 38 1 2.9563 -3.6869 4.8120 39 1 5.3770 -2.6276 3.8143 40 1 7.2452 -4.7026 7.2532 41 1 9.3739 -5.2120 5.4683 42 1 9.6660 -3.6430 6.2565 43 1 8.9568 -5.9876 8.0866 44 1 10.9611 -3.5771 8.1859 45 1 10.6066 -4.7502 9.5642 46 1 11.3962 -6.6821 8.1224 47 1 11.7504 -5.5087 6.7442 48 1 3.2533 -0.0617 4.3072 49 1 2.4316 1.0989 2.2971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280354621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:59 Heat of formation + Delta-G solvation = -8.170379 kcal Electronic energy + Delta-G solvation = -28430.212115 eV Core-core repulsion = 24358.322520 eV Total energy + Delta-G solvation = -4071.889596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.96663 -39.64191 -38.89184 -37.95920 -36.29347 -35.13207 -34.33150 -32.37150 -30.93359 -30.64312 -28.99379 -28.32061 -26.46452 -24.10253 -23.42084 -22.94495 -22.73213 -21.61442 -21.57933 -20.59833 -19.84560 -18.90080 -17.98188 -17.33046 -16.62745 -16.37996 -16.12492 -15.61095 -15.55107 -15.13910 -14.91027 -14.67109 -14.51075 -14.29032 -13.99655 -13.80961 -13.53592 -13.35978 -13.20039 -12.86806 -12.65093 -12.36829 -12.28777 -12.09951 -12.05809 -12.00746 -11.80476 -11.43360 -11.11198 -11.07476 -10.92043 -10.81657 -10.71839 -10.37806 -10.07631 -9.96872 -9.64403 -9.61315 -9.52117 -9.02855 -8.80823 -8.49484 -7.32631 -5.79974 -3.15905 1.10952 1.24563 1.52144 2.10211 2.90130 3.12733 3.35447 3.37719 3.38306 3.43745 3.90457 4.02417 4.18357 4.31233 4.40111 4.51540 4.56424 4.61608 4.80362 5.02930 5.04851 5.10010 5.10202 5.15954 5.20855 5.32773 5.36610 5.40292 5.51265 5.52268 5.54775 5.59337 5.76875 5.80648 5.87770 5.90036 6.08978 6.16102 6.19456 6.32333 6.47985 6.56101 6.58283 6.62349 6.84159 6.99102 7.03229 7.10949 7.41129 7.66836 7.95239 8.38630 9.16219 9.88646 10.07773 11.38093 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.001914 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.489853 B =14628.921214 C =16054.849731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.209 3.791 3 H 0.065 0.935 4 N -0.745 5.745 5 C -0.245 4.245 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 C -0.053 4.053 14 C -0.114 4.114 15 C -0.096 4.096 16 C -0.134 4.134 17 C 0.165 3.835 18 N -0.692 5.692 19 C 0.507 3.493 20 O -0.525 6.525 21 C 0.506 3.494 22 O -0.515 6.515 23 N -0.700 5.700 24 C 0.148 3.852 25 C -0.174 4.174 26 C -0.176 4.176 27 C -0.168 4.168 28 C -0.097 4.097 29 C -0.118 4.118 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.362 0.638 34 H 0.260 0.740 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.416 0.584 40 H 0.413 0.587 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.120 0.880 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 -9.627 28.569 31.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.100 3.900 3 H 0.083 0.917 4 N -0.389 5.389 5 C -0.374 4.374 6 H 0.110 0.890 7 C -0.189 4.189 8 N -0.579 5.579 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.202 1.202 13 C -0.054 4.054 14 C -0.132 4.132 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.043 3.957 18 N -0.345 5.345 19 C 0.287 3.713 20 O -0.402 6.402 21 C 0.286 3.714 22 O -0.390 6.390 23 N -0.354 5.354 24 C 0.025 3.975 25 C -0.193 4.193 26 C -0.213 4.213 27 C -0.206 4.206 28 C -0.116 4.116 29 C -0.136 4.136 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.253 0.747 40 H 0.250 0.750 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.138 0.862 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.681 -9.437 28.349 31.408 hybrid contribution 0.350 -1.360 -0.161 1.414 sum 10.030 -10.797 28.188 31.808 Atomic orbital electron populations 1.22386 0.97623 1.01212 1.00745 1.19231 0.92376 0.95294 0.83139 0.91662 1.42869 1.79781 1.09493 1.06766 1.19064 1.37256 0.95746 0.85372 0.89036 1.24650 1.01238 0.97469 0.95562 1.69691 1.52443 1.35532 1.00249 0.86616 0.78242 0.86929 0.77211 1.20999 1.21610 1.20227 1.20572 0.95045 0.93963 0.95841 1.21028 0.99900 0.94482 0.97777 1.21010 0.98188 0.99534 0.92759 1.19600 1.04301 0.93948 0.95579 1.20294 0.78678 1.00559 0.96139 1.45995 1.09435 1.57284 1.21737 1.20056 0.87879 0.79563 0.83811 1.90762 1.69533 1.49620 1.30253 1.20180 0.88239 0.79328 0.83627 1.90815 1.69536 1.48666 1.29944 1.45722 1.09177 1.58504 1.21972 1.21034 0.79112 1.00397 0.96962 1.22450 0.93865 1.03955 0.99017 1.23121 1.02938 0.97295 0.97934 1.22977 0.95250 0.99585 1.02776 1.20971 0.99019 0.93401 0.98159 1.21048 0.99582 1.00065 0.92948 0.93408 0.93951 0.91844 0.80436 0.93003 0.85880 0.86203 0.90105 0.90136 0.74667 0.75009 0.90345 0.90598 0.86876 0.88350 0.88424 0.88246 0.88240 0.86165 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.47 37.15 0.35 -2.37 16 2 C 0.21 3.92 3.09 -69.08 -0.21 3.71 16 3 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 4 N -0.75 -17.30 4.87 -54.55 -0.27 -17.56 16 5 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 9 Si 0.88 22.01 27.74 -169.99 -4.71 17.29 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.28 -6.52 6.52 56.52 0.37 -6.16 16 13 C -0.05 -0.85 4.96 -104.62 -0.52 -1.37 16 14 C -0.11 -1.75 9.06 -39.59 -0.36 -2.11 16 15 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 16 C -0.13 -1.54 5.25 -104.62 -0.55 -2.09 16 17 C 0.17 1.64 5.80 -5.19 -0.03 1.61 16 18 N -0.69 -7.23 5.54 -61.91 -0.34 -7.58 16 19 C 0.51 5.56 7.89 -11.59 -0.09 5.47 16 20 O -0.53 -6.50 16.48 5.50 0.09 -6.41 16 21 C 0.51 5.39 7.89 -11.59 -0.09 5.30 16 22 O -0.51 -6.85 16.48 5.50 0.09 -6.76 16 23 N -0.70 -5.50 5.55 -60.73 -0.34 -5.84 16 24 C 0.15 0.98 5.96 -4.04 -0.02 0.96 16 25 C -0.17 -0.83 5.85 -90.62 -0.53 -1.35 16 26 C -0.18 -0.75 10.18 -26.73 -0.27 -1.02 16 27 C -0.17 -0.69 10.25 -26.73 -0.27 -0.97 16 28 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 29 C -0.12 -1.60 9.67 -39.58 -0.38 -1.98 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.36 8.26 3.92 -40.82 -0.16 8.10 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.12 1.98 6.90 -52.48 -0.36 1.61 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 38 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.42 4.48 7.94 -40.82 -0.32 4.15 16 40 H 0.41 2.69 7.87 -40.82 -0.32 2.37 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.54 7.88 -51.93 -0.41 0.13 16 43 H 0.11 0.46 8.04 -51.93 -0.42 0.04 16 44 H 0.10 0.43 8.03 -51.93 -0.42 0.01 16 45 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 49 H 0.13 1.51 8.04 -52.49 -0.42 1.08 16 LS Contribution 414.18 15.07 6.24 6.24 Total: -1.00 -33.29 414.18 -9.95 -43.24 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -7.48 Total: 11.85 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -4.00 Total: -6.20 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.17 Total: -59.26 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.18 Total: -13.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.29 -9.95 -43.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280354621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.070 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds