Wall clock time and date at job start Wed Apr 1 2020 03:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47408 * 2 1 4 4 N 1.46499 * 109.47377 * 239.99599 * 2 1 3 5 5 C 1.36941 * 119.99959 * 84.99777 * 4 2 1 6 6 H 1.07997 * 119.99942 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99902 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99833 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46917 * 90.00212 * 9 7 5 11 11 H 1.48505 * 109.46745 * 209.99936 * 9 7 5 12 12 H 1.48495 * 109.47163 * 330.00032 * 9 7 5 13 13 C 1.50706 * 109.47163 * 119.99715 * 2 1 3 14 14 C 1.38228 * 119.99983 * 80.21409 * 13 2 1 15 15 C 1.38238 * 120.00110 * 180.21781 * 14 13 2 16 16 C 1.38234 * 119.99675 * 359.52133 * 15 14 13 17 17 C 1.50702 * 120.00257 * 180.25732 * 16 15 14 18 18 N 1.46505 * 109.46804 * 90.00184 * 17 16 15 19 19 C 1.34780 * 119.99957 * 180.02562 * 18 17 16 20 20 O 1.21348 * 119.99846 * 0.02562 * 19 18 17 21 21 C 1.49445 * 120.00109 * 179.97438 * 19 18 17 22 22 O 1.21351 * 119.99872 * 0.02562 * 21 19 18 23 23 N 1.34780 * 120.00109 * 180.02562 * 21 19 18 24 24 C 1.46504 * 119.99776 * 180.02562 * 23 21 19 25 25 C 1.52999 * 109.46834 * 180.02562 * 24 23 21 26 26 C 1.52997 * 117.49837 * 243.62059 * 25 24 23 27 27 C 1.52997 * 60.00055 * 252.51035 * 26 25 24 28 28 C 1.38235 * 120.00220 * 0.28720 * 16 15 14 29 29 C 1.38234 * 119.99892 * 259.99629 * 13 2 1 30 30 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47119 * 300.00248 * 1 2 3 32 32 H 1.08997 * 109.47560 * 60.00135 * 1 2 3 33 33 H 0.97002 * 120.00040 * 265.00513 * 4 2 1 34 34 H 0.96997 * 120.00389 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.00281 * 0.02562 * 14 13 2 36 36 H 1.08002 * 120.00519 * 179.80752 * 15 14 13 37 37 H 1.08993 * 109.47429 * 210.00613 * 17 16 15 38 38 H 1.08998 * 109.46961 * 330.00864 * 17 16 15 39 39 H 0.96997 * 120.00105 * 0.02562 * 18 17 16 40 40 H 0.96997 * 119.99939 * 0.02562 * 23 21 19 41 41 H 1.09005 * 109.46972 * 299.99660 * 24 23 21 42 42 H 1.08998 * 109.47193 * 60.00161 * 24 23 21 43 43 H 1.09005 * 115.54875 * 29.32898 * 25 24 23 44 44 H 1.08997 * 117.50120 * 359.97438 * 26 25 24 45 45 H 1.09005 * 117.50203 * 145.01934 * 26 25 24 46 46 H 1.09003 * 117.50092 * 252.51353 * 27 26 25 47 47 H 1.09000 * 117.50110 * 107.48630 * 27 26 25 48 48 H 1.07996 * 120.00471 * 179.97438 * 28 16 15 49 49 H 1.08001 * 120.00324 * 0.02562 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8926 1.0403 -2.4242 7 6 2.6114 -0.6622 -3.5092 8 7 2.7375 -0.0055 -4.6429 9 14 3.0557 -2.4746 -3.4252 10 1 1.8583 -3.2931 -3.7439 11 1 4.1308 -2.7667 -4.4072 12 1 3.5313 -2.8048 -2.0577 13 6 2.0323 -0.7104 1.2305 14 6 2.0709 -2.0917 1.2638 15 6 2.5274 -2.7434 2.3942 16 6 2.9547 -2.0135 3.4876 17 6 3.4579 -2.7238 4.7178 18 7 4.9031 -2.9351 4.6028 19 6 5.5741 -3.5567 5.5927 20 8 4.9812 -3.9417 6.5790 21 6 7.0482 -3.7728 5.4752 22 8 7.6410 -3.3881 4.4887 23 7 7.7191 -4.3948 6.4649 24 6 9.1643 -4.6061 6.3499 25 6 9.6749 -5.3289 7.5979 26 6 10.6699 -4.5827 8.4890 27 6 11.1462 -5.7479 7.6193 28 6 2.9199 -0.6320 3.4529 29 6 2.4588 0.0195 2.3243 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6319 -1.1525 34 1 3.0602 -0.4629 -5.4351 35 1 1.7414 -2.6620 0.4078 36 1 2.5547 -3.8227 2.4214 37 1 3.2483 -2.1173 5.5988 38 1 2.9563 -3.6869 4.8120 39 1 5.3770 -2.6276 3.8143 40 1 7.2452 -4.7026 7.2532 41 1 9.3739 -5.2120 5.4683 42 1 9.6660 -3.6430 6.2565 43 1 8.9568 -5.9876 8.0866 44 1 10.9611 -3.5771 8.1859 45 1 10.6066 -4.7502 9.5642 46 1 11.3962 -6.6821 8.1224 47 1 11.7504 -5.5087 6.7442 48 1 3.2533 -0.0617 4.3072 49 1 2.4316 1.0989 2.2971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280354621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:57 Heat of formation + Delta-G solvation = -30.607482 kcal Electronic energy + Delta-G solvation = -28431.185061 eV Core-core repulsion = 24358.322520 eV Total energy + Delta-G solvation = -4072.862542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.79601 -40.67051 -39.72100 -38.46877 -37.63123 -36.16812 -35.17529 -34.17352 -32.24881 -31.81836 -30.51058 -29.03322 -27.41079 -25.70537 -24.56086 -23.80361 -23.25412 -22.80946 -22.10226 -21.40235 -21.15010 -19.94512 -19.64539 -18.10622 -17.37086 -17.29751 -17.05440 -16.87143 -16.53207 -16.18639 -16.03780 -15.63373 -15.51214 -15.15968 -15.01628 -14.79229 -14.66556 -14.58281 -14.30528 -14.13886 -13.94526 -13.84261 -13.52190 -13.15055 -12.95192 -12.87733 -12.74105 -12.54406 -12.45601 -12.38313 -12.11949 -11.94369 -11.73694 -11.58016 -11.44001 -11.22735 -11.06381 -10.81334 -10.38018 -10.26994 -9.83163 -9.62656 -9.33379 -8.03380 -5.36441 0.21942 0.27470 0.49392 1.32496 1.34862 1.37791 1.44845 2.07331 2.46394 2.50945 2.82997 2.94632 3.28791 3.40229 3.58861 3.61606 3.62227 3.89199 3.93755 3.95626 4.05538 4.11762 4.20931 4.29882 4.50001 4.56119 4.56831 4.61454 4.63958 4.70410 4.75765 4.80664 4.95096 5.00983 5.03197 5.03972 5.06576 5.07441 5.19173 5.25197 5.27134 5.38162 5.50831 5.57947 5.71802 5.80363 5.84845 6.05251 6.21215 6.26595 6.64384 6.86932 7.06310 7.81965 8.01051 9.17970 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.001914 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.489853 B =14628.921214 C =16054.849731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.203 3.797 3 H 0.055 0.945 4 N -0.749 5.749 5 C -0.228 4.228 6 H 0.060 0.940 7 C -0.062 4.062 8 N -0.982 5.982 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.254 1.254 13 C -0.074 4.074 14 C -0.131 4.131 15 C -0.095 4.095 16 C -0.120 4.120 17 C 0.169 3.831 18 N -0.689 5.689 19 C 0.511 3.489 20 O -0.539 6.539 21 C 0.505 3.495 22 O -0.547 6.547 23 N -0.685 5.685 24 C 0.147 3.853 25 C -0.176 4.176 26 C -0.177 4.177 27 C -0.167 4.167 28 C -0.090 4.090 29 C -0.121 4.121 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.365 0.635 34 H 0.257 0.743 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.416 0.584 40 H 0.421 0.579 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.099 0.901 48 H 0.149 0.851 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.208 -11.365 32.076 35.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.095 3.905 3 H 0.073 0.927 4 N -0.393 5.393 5 C -0.359 4.359 6 H 0.078 0.922 7 C -0.254 4.254 8 N -0.633 5.633 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.223 1.223 12 H -0.179 1.179 13 C -0.075 4.075 14 C -0.150 4.150 15 C -0.114 4.114 16 C -0.121 4.121 17 C 0.047 3.953 18 N -0.341 5.341 19 C 0.291 3.709 20 O -0.417 6.417 21 C 0.286 3.714 22 O -0.425 6.425 23 N -0.338 5.338 24 C 0.024 3.976 25 C -0.195 4.195 26 C -0.213 4.213 27 C -0.204 4.204 28 C -0.108 4.108 29 C -0.140 4.140 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.199 0.801 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.156 0.844 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.253 0.747 40 H 0.259 0.741 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.141 0.859 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.117 0.883 48 H 0.167 0.833 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.204 -11.188 31.948 35.355 hybrid contribution 0.172 -0.744 -1.097 1.337 sum 10.377 -11.932 30.852 34.668 Atomic orbital electron populations 1.22235 0.96220 1.01457 1.01042 1.19379 0.93294 0.94786 0.83003 0.92708 1.42883 1.80003 1.09673 1.06788 1.19041 1.35082 0.94634 0.87104 0.92169 1.25432 1.02413 1.02287 0.95251 1.69868 1.54734 1.37566 1.01107 0.85526 0.77835 0.81231 0.77966 1.20240 1.22304 1.17909 1.20296 0.97412 0.94359 0.95439 1.21017 1.01212 0.94228 0.98523 1.21193 0.97433 1.00592 0.92145 1.19762 1.02779 0.93983 0.95559 1.20335 0.78286 1.01061 0.95632 1.45981 1.09630 1.56918 1.21545 1.20046 0.87909 0.79311 0.83605 1.90759 1.69768 1.50374 1.30770 1.20188 0.88167 0.79380 0.83692 1.90804 1.70002 1.50400 1.31249 1.45742 1.09696 1.56968 1.21421 1.21101 0.78256 1.00326 0.97889 1.22404 0.94415 1.04286 0.98369 1.23185 1.02475 0.97261 0.98423 1.23063 0.94575 1.00009 1.02801 1.21267 0.97627 0.93691 0.98207 1.21206 0.99224 1.00749 0.92805 0.93149 0.90926 0.94195 0.80071 0.93396 0.87133 0.84366 0.88774 0.89356 0.74732 0.74065 0.90902 0.91096 0.85912 0.88609 0.87525 0.87244 0.88295 0.83349 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.47 71.98 0.68 -4.37 16 2 C 0.20 7.61 3.09 44.25 0.14 7.74 16 3 H 0.05 2.14 7.94 -2.39 -0.02 2.12 16 4 N -0.75 -34.96 4.87 -326.51 -1.59 -36.55 16 5 C -0.23 -12.99 10.41 84.03 0.87 -12.11 16 6 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 7 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 8 N -0.98 -63.35 13.97 21.65 0.30 -63.05 16 9 Si 0.95 46.01 27.74 68.60 1.90 47.92 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.25 -11.28 6.52 99.48 0.65 -10.63 16 13 C -0.07 -2.28 4.96 -19.87 -0.10 -2.38 16 14 C -0.13 -3.83 9.06 22.27 0.20 -3.63 16 15 C -0.10 -2.18 9.70 22.27 0.22 -1.97 16 16 C -0.12 -2.36 5.25 -19.87 -0.10 -2.47 16 17 C 0.17 2.75 5.80 85.63 0.50 3.25 16 18 N -0.69 -12.57 5.54 -468.14 -2.59 -15.16 16 19 C 0.51 10.10 7.89 87.27 0.69 10.79 16 20 O -0.54 -12.00 16.48 -3.24 -0.05 -12.06 16 21 C 0.51 10.04 7.89 87.27 0.69 10.73 16 22 O -0.55 -14.06 16.48 -3.25 -0.05 -14.11 16 23 N -0.68 -9.72 5.55 -464.40 -2.58 -12.30 16 24 C 0.15 1.78 5.96 86.38 0.51 2.29 16 25 C -0.18 -1.36 5.85 -10.80 -0.06 -1.42 16 26 C -0.18 -1.20 10.18 30.59 0.31 -0.89 16 27 C -0.17 -1.09 10.25 30.59 0.31 -0.78 16 28 C -0.09 -1.79 9.70 22.27 0.22 -1.57 16 29 C -0.12 -3.02 9.67 22.27 0.22 -2.81 16 30 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.36 16.45 3.92 -92.71 -0.36 16.09 16 34 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 35 H 0.11 3.44 6.90 -2.91 -0.02 3.42 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 38 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 39 H 0.42 7.98 7.94 -92.71 -0.74 7.24 16 40 H 0.42 4.67 7.87 -92.71 -0.73 3.94 16 41 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.07 0.95 7.88 -2.39 -0.02 0.93 16 43 H 0.12 0.72 8.04 -2.38 -0.02 0.70 16 44 H 0.10 0.70 8.03 -2.39 -0.02 0.68 16 45 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 49 H 0.14 3.00 8.04 -2.91 -0.02 2.98 16 Total: -1.00 -73.21 414.18 0.19 -73.02 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -0.90 Total: 35.13 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 5.76 Total: -2.84 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -6.46 Total: -127.06 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.11 Total: -26.17 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.92 kcal Total: -73.21 0.19 -73.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280354621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.411 kcal (2) G-P(sol) polarization free energy of solvation -73.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds