Wall clock time and date at job start Wed Apr 1 2020 04:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35990 * 116.99229 * 2 1 4 4 C 1.39379 * 119.82656 * 0.02562 * 3 2 1 5 5 C 1.37593 * 120.60307 * 180.27945 * 4 3 2 6 6 C 1.39212 * 120.02669 * 359.44337 * 5 4 3 7 7 N 1.37674 * 133.03475 * 180.19775 * 6 5 4 8 8 H 0.96998 * 125.61153 * 0.26708 * 7 6 5 9 9 C 1.38111 * 108.76844 * 180.30239 * 7 6 5 10 10 C 1.47062 * 125.42395 * 179.97438 * 9 7 6 11 11 O 1.21651 * 119.99641 * 180.02562 * 10 9 7 12 12 N 1.34767 * 120.00161 * 0.02562 * 10 9 7 13 13 C 1.46501 * 120.00266 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.46664 * 324.99917 * 13 12 10 15 15 C 1.53004 * 109.47095 * 84.99374 * 13 12 10 16 16 C 1.53001 * 109.47276 * 204.99992 * 13 12 10 17 17 C 1.52994 * 109.47246 * 64.99558 * 16 13 12 18 18 C 1.53001 * 109.47246 * 180.02562 * 17 16 13 19 19 N 1.46498 * 109.47273 * 180.02562 * 18 17 16 20 20 C 1.36938 * 120.00104 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99861 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00194 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99934 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99769 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47313 * 90.00157 * 24 22 20 26 26 H 1.48508 * 109.47190 * 209.99762 * 24 22 20 27 27 H 1.48501 * 109.47446 * 329.99800 * 24 22 20 28 28 C 1.35879 * 109.14930 * 359.97438 * 9 7 6 29 29 C 1.40802 * 119.61318 * 0.53137 * 6 5 4 30 30 C 1.37843 * 119.81639 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47091 * 60.00574 * 1 2 3 32 32 H 1.09004 * 109.46378 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47585 * 299.99786 * 1 2 3 34 34 H 1.08002 * 119.69368 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.98895 * 179.72356 * 5 4 3 36 36 H 0.97008 * 120.00324 * 359.97438 * 12 10 9 37 37 H 1.08995 * 109.47137 * 300.00111 * 15 13 12 38 38 H 1.09001 * 109.46500 * 60.00841 * 15 13 12 39 39 H 1.09000 * 109.46822 * 180.02562 * 15 13 12 40 40 H 1.09005 * 109.46797 * 184.99670 * 16 13 12 41 41 H 1.09005 * 109.46753 * 304.99453 * 16 13 12 42 42 H 1.08997 * 109.47327 * 300.00104 * 17 16 13 43 43 H 1.09000 * 109.46886 * 60.00132 * 17 16 13 44 44 H 1.09005 * 109.46797 * 300.00112 * 18 17 16 45 45 H 1.08993 * 109.47118 * 59.99875 * 18 17 16 46 46 H 0.97001 * 119.99751 * 359.97438 * 19 18 17 47 47 H 0.97005 * 119.99947 * 179.97438 * 23 22 20 48 48 H 1.07996 * 126.12959 * 180.02562 * 28 9 7 49 49 H 1.08004 * 120.16819 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2118 0.0000 4 6 1.2834 2.3783 0.0005 5 6 1.8912 3.6127 -0.0052 6 6 3.2803 3.7053 0.0000 7 7 4.1508 4.7718 0.0000 8 1 3.8971 5.7080 -0.0005 9 6 5.4449 4.2892 -0.0001 10 6 6.6623 5.1141 -0.0008 11 8 7.7568 4.5831 -0.0013 12 7 6.5655 6.4583 -0.0007 13 6 7.7782 7.2802 -0.0019 14 1 8.5518 6.7870 0.5869 15 6 8.2697 7.4620 -1.4394 16 6 7.4677 8.6486 0.6079 17 6 7.0960 8.4775 2.0821 18 6 6.7848 9.8458 2.6918 19 7 6.4296 9.6821 4.1036 20 6 6.1089 10.7773 4.8604 21 1 6.1182 11.7619 4.4166 22 6 5.7718 10.6221 6.1980 23 7 5.4640 11.6749 6.9255 24 14 5.7549 8.9191 6.9654 25 1 7.0964 8.6150 7.5251 26 1 4.7437 8.8758 8.0522 27 1 5.4111 7.9126 5.9291 28 6 5.4139 2.9307 0.0004 29 6 4.0559 2.5301 -0.0001 30 6 3.4230 1.2797 0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0278 -0.0005 33 1 -0.3634 0.5137 0.8899 34 1 0.2054 2.3126 0.0005 35 1 1.2905 4.5102 -0.0093 36 1 5.6927 6.8818 -0.0007 37 1 8.4910 6.4871 -1.8738 38 1 7.4962 7.9551 -2.0281 39 1 9.1723 8.0731 -1.4402 40 1 8.3451 9.2902 0.5264 41 1 6.6338 9.1037 0.0734 42 1 6.2187 7.8358 2.1636 43 1 7.9299 8.0224 2.6165 44 1 7.6620 10.4879 2.6103 45 1 5.9509 10.3005 2.1573 46 1 6.4208 8.7977 4.5021 47 1 5.2280 11.5664 7.8602 48 1 6.2715 2.2743 0.0009 49 1 4.0111 0.3738 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283230019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:12 Heat of formation + Delta-G solvation = -11.802200 kcal Electronic energy + Delta-G solvation = -28926.633456 eV Core-core repulsion = 24854.586373 eV Total energy + Delta-G solvation = -4072.047083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.92255 -40.06846 -39.33684 -36.98616 -35.94930 -35.11085 -32.83183 -32.48240 -31.44926 -29.96437 -29.75058 -29.03666 -27.22289 -26.01860 -24.62595 -22.78189 -22.37818 -21.58095 -21.04658 -20.90783 -20.45288 -18.87880 -17.96899 -17.54991 -17.48593 -16.50325 -16.11075 -16.05854 -15.52457 -15.06470 -14.79883 -14.57449 -14.45059 -14.19605 -14.08301 -13.95865 -13.67990 -13.52299 -13.50027 -13.09146 -13.03548 -12.69937 -12.39434 -12.35530 -12.28694 -12.25765 -11.77463 -11.38190 -11.11108 -11.04362 -10.96070 -10.90937 -10.62148 -10.48522 -10.34667 -10.20879 -10.14592 -9.62178 -9.39353 -8.92204 -8.36604 -7.91022 -7.26142 -5.79698 -3.15297 0.37303 1.28248 1.78103 2.54372 2.76964 3.02175 3.07959 3.35529 3.39136 3.43614 3.50526 4.28737 4.36340 4.53653 4.56678 4.57723 4.65500 4.78765 4.82143 4.85813 4.97339 4.99255 5.02870 5.10143 5.19199 5.27050 5.33784 5.45891 5.50103 5.52149 5.59581 5.64805 5.74074 5.83536 5.86162 5.90879 5.98383 6.00720 6.03744 6.08143 6.21299 6.25058 6.32144 6.52575 6.68677 6.72141 6.98028 7.10873 7.19936 7.84558 7.96445 8.39541 9.18617 9.91254 10.11011 11.38684 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008639 B = 0.002413 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.236827 B =11602.550567 C =13996.603089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.095 3.905 4 C -0.165 4.165 5 C -0.091 4.091 6 C 0.085 3.915 7 N -0.577 5.577 8 H 0.419 0.581 9 C 0.029 3.971 10 C 0.584 3.416 11 O -0.520 6.520 12 N -0.718 5.718 13 C 0.141 3.859 14 H 0.093 0.907 15 C -0.163 4.163 16 C -0.123 4.123 17 C -0.130 4.130 18 C 0.157 3.843 19 N -0.758 5.758 20 C -0.246 4.246 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.934 5.934 24 Si 0.886 3.114 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.278 1.278 28 C -0.114 4.114 29 C -0.080 4.080 30 C -0.103 4.103 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.396 0.604 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.024 0.976 46 H 0.360 0.640 47 H 0.260 0.740 48 H 0.158 0.842 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -20.348 -21.532 30.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.050 3.950 4 C -0.185 4.185 5 C -0.111 4.111 6 C -0.024 4.024 7 N -0.182 5.182 8 H 0.257 0.743 9 C -0.082 4.082 10 C 0.370 3.630 11 O -0.396 6.396 12 N -0.369 5.369 13 C 0.037 3.963 14 H 0.111 0.889 15 C -0.221 4.221 16 C -0.162 4.162 17 C -0.168 4.168 18 C 0.030 3.970 19 N -0.403 5.403 20 C -0.375 4.375 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.582 5.582 24 Si 0.716 3.284 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.141 4.141 29 C -0.085 4.085 30 C -0.122 4.122 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.230 0.770 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.193 0.807 47 H 0.070 0.930 48 H 0.175 0.825 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.338 -20.485 -21.461 30.338 hybrid contribution -1.032 -0.216 0.765 1.303 sum -7.370 -20.702 -20.697 30.186 Atomic orbital electron populations 1.23029 0.78598 1.03866 1.01223 1.86083 1.21121 1.26611 1.89509 1.18571 0.91868 0.84106 1.00479 1.20998 0.99948 0.91375 1.06183 1.19867 0.90356 0.97986 1.02934 1.18239 0.91552 0.86897 1.05721 1.41910 1.04117 1.07933 1.64272 0.74325 1.20206 0.83465 0.94010 1.10471 1.17184 0.87289 0.81819 0.76729 1.90856 1.26529 1.72541 1.49661 1.46026 1.10289 1.05606 1.75021 1.21135 0.86800 0.91299 0.97038 0.88888 1.22178 1.01534 1.02382 0.96017 1.21858 1.02922 0.95149 0.96238 1.21796 1.01498 0.99110 0.94436 1.20623 0.97425 0.93651 0.85322 1.42732 1.84422 1.06226 1.06953 1.19066 1.38558 0.88050 0.91873 0.89250 1.24687 1.01517 0.96691 0.96351 1.69703 1.52955 1.27792 1.07750 0.86534 0.77677 0.85199 0.78997 1.20991 1.21670 1.20467 1.20850 0.95908 0.92475 1.04873 1.17837 0.92998 0.91872 1.05780 1.19701 0.91135 0.96631 1.04749 0.92787 0.88352 0.92705 0.84859 0.85395 0.77004 0.92125 0.92460 0.91206 0.89753 0.91244 0.92334 0.91798 0.95527 0.95804 0.80718 0.93037 0.82484 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.89 10.49 -19.71 -0.21 -3.09 16 3 C 0.10 0.92 6.67 -39.30 -0.26 0.66 16 4 C -0.17 -1.35 9.01 -39.39 -0.35 -1.70 16 5 C -0.09 -0.76 10.06 -39.45 -0.40 -1.16 16 6 C 0.08 0.85 7.25 -83.91 -0.61 0.24 16 7 N -0.58 -5.17 6.08 -7.33 -0.04 -5.21 16 8 H 0.42 2.62 8.12 -40.82 -0.33 2.28 16 9 C 0.03 0.31 6.97 -82.30 -0.57 -0.26 16 10 C 0.58 6.98 7.76 -12.69 -0.10 6.88 16 11 O -0.52 -7.87 16.50 5.23 0.09 -7.78 16 12 N -0.72 -6.94 4.53 -54.99 -0.25 -7.19 16 13 C 0.14 1.41 2.57 -67.93 -0.17 1.24 16 14 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 15 C -0.16 -1.42 9.48 37.16 0.35 -1.06 16 16 C -0.12 -1.26 4.75 -26.73 -0.13 -1.38 16 17 C -0.13 -1.83 5.22 -26.73 -0.14 -1.97 16 18 C 0.16 2.91 6.26 -4.04 -0.03 2.89 16 19 N -0.76 -18.12 5.41 -59.91 -0.32 -18.44 16 20 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 24 Si 0.89 22.43 27.73 -169.99 -4.71 17.71 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 28 C -0.11 -1.28 10.53 -39.15 -0.41 -1.70 16 29 C -0.08 -0.88 6.16 -106.93 -0.66 -1.54 16 30 C -0.10 -1.05 10.04 -39.01 -0.39 -1.45 16 31 H 0.05 0.22 7.65 -51.93 -0.40 -0.18 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.24 7.65 -51.93 -0.40 -0.16 16 34 H 0.13 0.75 6.26 -52.49 -0.33 0.42 16 35 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.40 2.97 7.66 -40.82 -0.31 2.65 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.36 8.48 5.53 -40.82 -0.23 8.25 16 47 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 48 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 49 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 405.96 15.07 6.12 6.12 Total: -1.00 -35.94 405.96 -9.15 -45.09 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.45 Total: 7.92 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.13 Total: -6.37 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.16 Total: -59.59 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.12 Total: -10.88 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.94 -9.15 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283230019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.287 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds