Wall clock time and date at job start Wed Apr 1 2020 04:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35990 * 116.99229 * 2 1 4 4 C 1.39379 * 119.82656 * 0.02562 * 3 2 1 5 5 C 1.37593 * 120.60307 * 180.27945 * 4 3 2 6 6 C 1.39212 * 120.02669 * 359.44337 * 5 4 3 7 7 N 1.37674 * 133.03475 * 180.19775 * 6 5 4 8 8 H 0.96998 * 125.61153 * 0.26708 * 7 6 5 9 9 C 1.38111 * 108.76844 * 180.30239 * 7 6 5 10 10 C 1.47062 * 125.42395 * 179.97438 * 9 7 6 11 11 O 1.21651 * 119.99641 * 180.02562 * 10 9 7 12 12 N 1.34767 * 120.00161 * 0.02562 * 10 9 7 13 13 C 1.46501 * 120.00266 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.46664 * 324.99917 * 13 12 10 15 15 C 1.53004 * 109.47095 * 84.99374 * 13 12 10 16 16 C 1.53001 * 109.47276 * 204.99992 * 13 12 10 17 17 C 1.52994 * 109.47246 * 64.99558 * 16 13 12 18 18 C 1.53001 * 109.47246 * 180.02562 * 17 16 13 19 19 N 1.46498 * 109.47273 * 180.02562 * 18 17 16 20 20 C 1.36938 * 120.00104 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99861 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00194 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99934 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99769 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47313 * 90.00157 * 24 22 20 26 26 H 1.48508 * 109.47190 * 209.99762 * 24 22 20 27 27 H 1.48501 * 109.47446 * 329.99800 * 24 22 20 28 28 C 1.35879 * 109.14930 * 359.97438 * 9 7 6 29 29 C 1.40802 * 119.61318 * 0.53137 * 6 5 4 30 30 C 1.37843 * 119.81639 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47091 * 60.00574 * 1 2 3 32 32 H 1.09004 * 109.46378 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47585 * 299.99786 * 1 2 3 34 34 H 1.08002 * 119.69368 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.98895 * 179.72356 * 5 4 3 36 36 H 0.97008 * 120.00324 * 359.97438 * 12 10 9 37 37 H 1.08995 * 109.47137 * 300.00111 * 15 13 12 38 38 H 1.09001 * 109.46500 * 60.00841 * 15 13 12 39 39 H 1.09000 * 109.46822 * 180.02562 * 15 13 12 40 40 H 1.09005 * 109.46797 * 184.99670 * 16 13 12 41 41 H 1.09005 * 109.46753 * 304.99453 * 16 13 12 42 42 H 1.08997 * 109.47327 * 300.00104 * 17 16 13 43 43 H 1.09000 * 109.46886 * 60.00132 * 17 16 13 44 44 H 1.09005 * 109.46797 * 300.00112 * 18 17 16 45 45 H 1.08993 * 109.47118 * 59.99875 * 18 17 16 46 46 H 0.97001 * 119.99751 * 359.97438 * 19 18 17 47 47 H 0.97005 * 119.99947 * 179.97438 * 23 22 20 48 48 H 1.07996 * 126.12959 * 180.02562 * 28 9 7 49 49 H 1.08004 * 120.16819 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2118 0.0000 4 6 1.2834 2.3783 0.0005 5 6 1.8912 3.6127 -0.0052 6 6 3.2803 3.7053 0.0000 7 7 4.1508 4.7718 0.0000 8 1 3.8971 5.7080 -0.0005 9 6 5.4449 4.2892 -0.0001 10 6 6.6623 5.1141 -0.0008 11 8 7.7568 4.5831 -0.0013 12 7 6.5655 6.4583 -0.0007 13 6 7.7782 7.2802 -0.0019 14 1 8.5518 6.7870 0.5869 15 6 8.2697 7.4620 -1.4394 16 6 7.4677 8.6486 0.6079 17 6 7.0960 8.4775 2.0821 18 6 6.7848 9.8458 2.6918 19 7 6.4296 9.6821 4.1036 20 6 6.1089 10.7773 4.8604 21 1 6.1182 11.7619 4.4166 22 6 5.7718 10.6221 6.1980 23 7 5.4640 11.6749 6.9255 24 14 5.7549 8.9191 6.9654 25 1 7.0964 8.6150 7.5251 26 1 4.7437 8.8758 8.0522 27 1 5.4111 7.9126 5.9291 28 6 5.4139 2.9307 0.0004 29 6 4.0559 2.5301 -0.0001 30 6 3.4230 1.2797 0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0278 -0.0005 33 1 -0.3634 0.5137 0.8899 34 1 0.2054 2.3126 0.0005 35 1 1.2905 4.5102 -0.0093 36 1 5.6927 6.8818 -0.0007 37 1 8.4910 6.4871 -1.8738 38 1 7.4962 7.9551 -2.0281 39 1 9.1723 8.0731 -1.4402 40 1 8.3451 9.2902 0.5264 41 1 6.6338 9.1037 0.0734 42 1 6.2187 7.8358 2.1636 43 1 7.9299 8.0224 2.6165 44 1 7.6620 10.4879 2.6103 45 1 5.9509 10.3005 2.1573 46 1 6.4208 8.7977 4.5021 47 1 5.2280 11.5664 7.8602 48 1 6.2715 2.2743 0.0009 49 1 4.0111 0.3738 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283230019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:11 Heat of formation + Delta-G solvation = -36.461503 kcal Electronic energy + Delta-G solvation = -28927.702764 eV Core-core repulsion = 24854.586373 eV Total energy + Delta-G solvation = -4073.116391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.66781 -40.87730 -40.04159 -38.07728 -36.68810 -36.62887 -34.29934 -33.31073 -32.89453 -31.29290 -30.40754 -29.77451 -27.70930 -27.40162 -25.50035 -24.33774 -23.17335 -22.59081 -22.28459 -21.74147 -21.28488 -19.67176 -19.60616 -18.62461 -18.21730 -17.37574 -16.77954 -16.64484 -16.61235 -16.36528 -15.93382 -15.91369 -15.57852 -15.23883 -14.94335 -14.88438 -14.86084 -14.54860 -14.26304 -14.14629 -13.92122 -13.72594 -13.58342 -13.52446 -13.10750 -12.93448 -12.87134 -12.77430 -12.52873 -12.13982 -12.06051 -11.90399 -11.80700 -11.71623 -11.57375 -11.51613 -11.31981 -10.99798 -10.94345 -10.26698 -9.32031 -9.09964 -8.61204 -8.06102 -5.39294 -0.37768 0.57670 0.98579 1.34799 1.37850 1.44891 1.79084 2.00747 2.21560 2.44751 2.46093 2.79209 3.25488 3.45465 3.63014 3.67710 3.85228 3.96413 4.02114 4.06729 4.14092 4.27065 4.36146 4.37419 4.43060 4.46832 4.49902 4.53068 4.60853 4.76880 4.79991 4.82079 4.82675 4.86169 4.96833 5.00478 5.07130 5.13186 5.28080 5.30177 5.31921 5.37087 5.39831 5.48932 5.56582 5.73094 5.80530 6.18660 6.29527 6.46638 6.51552 6.99028 7.05135 7.82638 7.99953 9.15379 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008639 B = 0.002413 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.236827 B =11602.550567 C =13996.603089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.090 3.910 4 C -0.163 4.163 5 C -0.089 4.089 6 C 0.075 3.925 7 N -0.563 5.563 8 H 0.432 0.568 9 C 0.022 3.978 10 C 0.585 3.415 11 O -0.559 6.559 12 N -0.706 5.706 13 C 0.144 3.856 14 H 0.073 0.927 15 C -0.157 4.157 16 C -0.111 4.111 17 C -0.119 4.119 18 C 0.151 3.849 19 N -0.763 5.763 20 C -0.236 4.236 21 H 0.058 0.942 22 C -0.065 4.065 23 N -0.983 5.983 24 Si 0.955 3.045 25 H -0.280 1.280 26 H -0.294 1.294 27 H -0.254 1.254 28 C -0.131 4.131 29 C -0.099 4.099 30 C -0.125 4.125 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.409 0.591 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.024 0.976 45 H 0.030 0.970 46 H 0.364 0.636 47 H 0.258 0.742 48 H 0.153 0.847 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.785 -21.201 -22.819 32.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.045 3.955 4 C -0.182 4.182 5 C -0.110 4.110 6 C -0.035 4.035 7 N -0.170 5.170 8 H 0.272 0.728 9 C -0.089 4.089 10 C 0.371 3.629 11 O -0.438 6.438 12 N -0.358 5.358 13 C 0.040 3.960 14 H 0.091 0.909 15 C -0.215 4.215 16 C -0.149 4.149 17 C -0.157 4.157 18 C 0.026 3.974 19 N -0.409 5.409 20 C -0.367 4.367 21 H 0.076 0.924 22 C -0.257 4.257 23 N -0.633 5.633 24 Si 0.783 3.217 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.179 1.179 28 C -0.158 4.158 29 C -0.104 4.104 30 C -0.145 4.145 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.245 0.755 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.197 0.803 47 H 0.067 0.933 48 H 0.171 0.829 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.926 -21.320 -22.806 32.210 hybrid contribution -0.606 0.081 1.089 1.249 sum -8.532 -21.239 -21.716 31.551 Atomic orbital electron populations 1.23325 0.76568 1.05439 1.02294 1.86063 1.23305 1.26562 1.89376 1.18751 0.91836 0.84992 0.99953 1.21340 1.01318 0.90673 1.04890 1.20220 0.89765 0.99185 1.01787 1.18495 0.92337 0.86693 1.05929 1.41796 1.03161 1.08506 1.63515 0.72767 1.20028 0.83919 0.93788 1.11188 1.17291 0.86981 0.82388 0.76192 1.90833 1.27936 1.73334 1.51671 1.45947 1.11015 1.04896 1.73895 1.21080 0.86397 0.90800 0.97733 0.90877 1.22116 1.02563 1.01927 0.94863 1.21772 1.04183 0.95416 0.93569 1.21677 1.01363 0.96140 0.96512 1.20858 0.97296 0.96485 0.82805 1.42807 1.84271 1.04982 1.08796 1.19074 1.37014 0.88302 0.92301 0.92371 1.25520 1.02137 1.00916 0.97079 1.69879 1.54970 1.30418 1.08054 0.85409 0.77515 0.80567 0.78249 1.20651 1.22010 1.17896 1.20970 0.96316 0.92991 1.05539 1.17972 0.93009 0.92724 1.06674 1.19827 0.91960 0.96607 1.06062 0.91458 0.86741 0.91758 0.82074 0.82629 0.75480 0.93665 0.90909 0.90025 0.88734 0.89201 0.91946 0.92637 0.95744 0.95189 0.80337 0.93284 0.82892 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.75 10.49 -93.44 -0.98 -6.73 16 3 C 0.09 1.65 6.67 22.45 0.15 1.80 16 4 C -0.16 -2.26 9.01 22.39 0.20 -2.05 16 5 C -0.09 -1.27 10.06 22.35 0.22 -1.04 16 6 C 0.07 1.39 7.25 39.09 0.28 1.67 16 7 N -0.56 -9.17 6.08 -177.11 -1.08 -10.25 16 8 H 0.43 4.31 8.12 -92.71 -0.75 3.56 16 9 C 0.02 0.47 6.97 39.92 0.28 0.74 16 10 C 0.58 13.66 7.76 86.56 0.67 14.33 16 11 O -0.56 -17.17 16.50 -4.19 -0.07 -17.24 16 12 N -0.71 -12.35 4.53 -446.13 -2.02 -14.37 16 13 C 0.14 2.59 2.57 44.99 0.12 2.71 16 14 H 0.07 1.66 7.58 -2.38 -0.02 1.65 16 15 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 16 C -0.11 -1.93 4.75 30.59 0.15 -1.79 16 17 C -0.12 -3.05 5.22 30.59 0.16 -2.89 16 18 C 0.15 5.33 6.26 86.38 0.54 5.87 16 19 N -0.76 -35.40 5.41 -343.46 -1.86 -37.26 16 20 C -0.24 -13.51 10.47 84.03 0.88 -12.63 16 21 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 22 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 23 N -0.98 -63.17 13.97 21.65 0.30 -62.87 16 24 Si 0.96 45.97 27.73 68.60 1.90 47.87 16 25 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 28 C -0.13 -3.03 10.53 22.55 0.24 -2.79 16 29 C -0.10 -2.18 6.16 -21.36 -0.13 -2.31 16 30 C -0.12 -2.60 10.04 22.64 0.23 -2.37 16 31 H 0.07 0.36 7.65 -2.39 -0.02 0.34 16 32 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.39 7.65 -2.39 -0.02 0.37 16 34 H 0.16 1.24 6.26 -2.91 -0.02 1.22 16 35 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 36 H 0.41 4.99 7.66 -92.70 -0.71 4.28 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.06 1.56 7.75 -2.39 -0.02 1.54 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.36 16.28 5.53 -92.71 -0.51 15.77 16 47 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 48 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 49 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -79.33 405.96 1.41 -77.93 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -1.04 Total: 27.50 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 6.25 Total: -4.58 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -4.65 Total: -124.75 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -1.05 Total: -23.97 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.87 kcal Total: -79.33 1.41 -77.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283230019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.466 kcal (2) G-P(sol) polarization free energy of solvation -79.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds