Wall clock time and date at job start Wed Apr 1 2020 04:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32684 * 1 3 3 C 1.47668 * 119.99646 * 2 1 4 4 C 1.39706 * 120.00052 * 359.72762 * 3 2 1 5 5 C 1.37598 * 120.00605 * 179.76197 * 4 3 2 6 6 C 1.39745 * 119.99600 * 0.50977 * 5 4 3 7 7 C 1.47688 * 120.00723 * 179.71723 * 6 5 4 8 8 O 1.21573 * 120.00061 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00022 * 0.02615 * 7 6 5 10 10 C 1.46499 * 120.00098 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46996 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47310 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.46664 * 55.00245 * 12 11 10 14 14 C 1.52992 * 109.47388 * 175.00209 * 12 11 10 15 15 N 1.46902 * 109.47018 * 295.00920 * 12 11 10 16 16 C 1.46900 * 111.00047 * 154.99766 * 15 12 11 17 17 C 1.50702 * 109.47118 * 179.97438 * 16 15 12 18 18 O 1.21286 * 119.99831 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99835 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99837 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99858 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99981 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00031 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47176 * 59.99869 * 24 22 20 26 26 H 1.48497 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47081 * 300.00098 * 24 22 20 28 28 C 1.39747 * 119.98983 * 359.74150 * 6 5 4 29 29 C 1.37603 * 119.99749 * 0.02562 * 28 6 5 30 30 H 1.07997 * 120.00240 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99698 * 359.72031 * 1 2 3 32 32 H 1.07999 * 119.99987 * 180.02562 * 2 1 3 33 33 H 1.08005 * 119.99757 * 359.97438 * 4 3 2 34 34 H 1.08005 * 120.00547 * 180.25194 * 5 4 3 35 35 H 0.97000 * 119.99531 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47152 * 300.00165 * 10 9 7 37 37 H 1.09000 * 109.46647 * 60.00396 * 10 9 7 38 38 H 1.08993 * 109.47700 * 300.00504 * 11 10 9 39 39 H 1.09005 * 109.47099 * 60.00456 * 11 10 9 40 40 H 1.09003 * 109.47188 * 60.00357 * 14 12 11 41 41 H 1.09005 * 109.47282 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.47487 * 300.00349 * 14 12 11 43 43 H 1.00897 * 111.00199 * 31.03623 * 15 12 11 44 44 H 1.08999 * 109.47113 * 299.99876 * 16 15 12 45 45 H 1.09004 * 109.46989 * 59.99619 * 16 15 12 46 46 H 0.97007 * 120.00025 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99841 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.00394 * 179.97438 * 28 6 5 49 49 H 1.07994 * 119.99855 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 1.3665 2.4887 -0.0058 5 6 2.0543 3.6805 -0.0008 6 6 3.4517 3.6806 -0.0008 7 6 4.1902 4.9596 -0.0018 8 8 5.4059 4.9596 -0.0022 9 7 3.5163 6.1269 -0.0022 10 6 4.2488 7.3956 -0.0026 11 6 3.2546 8.5585 -0.0036 12 6 4.0195 9.8835 -0.0047 13 1 4.7117 9.9027 -0.8466 14 6 3.0301 11.0435 -0.1314 15 7 4.7714 10.0159 1.2503 16 6 5.9299 10.9027 1.0790 17 6 6.6745 11.0143 2.3844 18 8 6.2787 10.4146 3.3615 19 7 7.7797 11.7814 2.4664 20 6 8.4568 11.8834 3.6541 21 1 8.1047 11.3487 4.5240 22 6 9.5965 12.6738 3.7385 23 7 10.0250 13.3239 2.6799 24 14 10.5194 12.8122 5.3566 25 1 10.9842 11.4663 5.7781 26 1 11.6902 13.7090 5.1835 27 1 9.6171 13.3717 6.3948 28 6 4.1504 2.4703 -0.0003 29 6 3.4623 1.2787 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9354 0.0046 32 1 1.8668 -0.9353 -0.0004 33 1 0.2865 2.4886 -0.0106 34 1 1.5142 4.6158 -0.0011 35 1 2.5463 6.1268 -0.0022 36 1 4.8755 7.4536 0.8873 37 1 4.8754 7.4530 -0.8927 38 1 2.6282 8.5003 -0.8937 39 1 2.6276 8.5012 0.8862 40 1 2.3379 11.0243 0.7104 41 1 3.5751 11.9876 -0.1327 42 1 2.4722 10.9453 -1.0627 43 1 5.0557 9.1126 1.5986 44 1 6.5920 10.4921 0.3166 45 1 5.5887 11.8907 0.7700 46 1 8.0961 12.2613 1.6850 47 1 10.8208 13.8753 2.7387 48 1 5.2304 2.4702 -0.0008 49 1 4.0022 0.3434 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317410204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:46 Heat of formation + Delta-G solvation = -33.225243 kcal Electronic energy + Delta-G solvation = -28205.768189 eV Core-core repulsion = 24132.792133 eV Total energy + Delta-G solvation = -4072.976056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.51575 -38.97387 -38.40240 -37.14565 -34.93039 -34.63145 -33.85830 -31.88637 -31.34325 -31.03110 -30.19900 -28.77167 -26.39525 -24.96524 -23.96773 -23.17238 -22.95114 -21.20130 -20.42223 -19.98683 -19.22473 -18.33757 -17.84806 -16.90242 -16.34819 -16.03932 -15.84996 -15.43924 -15.26150 -15.15902 -14.94447 -14.48174 -14.38138 -13.94455 -13.78240 -13.71528 -13.66519 -13.56991 -13.17801 -13.01546 -12.70594 -12.48420 -12.15203 -11.85104 -11.78416 -11.68608 -11.55771 -11.37728 -11.29916 -11.22429 -11.01567 -10.84079 -10.76700 -10.40755 -10.17400 -10.13746 -9.46471 -9.45829 -9.32467 -8.70577 -8.40399 -8.04041 -7.91525 -6.37470 -3.78100 0.12391 0.95210 1.78896 2.76340 2.87511 3.23677 3.28801 3.33604 3.56700 3.95592 4.12259 4.16709 4.22641 4.34895 4.40064 4.49239 4.61257 4.72092 4.84178 4.87159 4.93655 4.97246 5.15034 5.21273 5.29141 5.33711 5.39311 5.41701 5.53563 5.55667 5.70683 5.72391 5.80784 5.82042 5.84813 5.89293 5.93524 6.02761 6.05253 6.07483 6.17347 6.23978 6.27925 6.37616 6.43189 7.22459 7.27058 7.59163 7.69171 7.97789 8.10563 8.65897 9.22154 9.58846 10.10583 10.80264 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.001662 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.014734 B =16848.046114 C =18080.445011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.037 4.037 4 C -0.124 4.124 5 C -0.083 4.083 6 C -0.133 4.133 7 C 0.554 3.446 8 O -0.531 6.531 9 N -0.723 5.723 10 C 0.112 3.888 11 C -0.133 4.133 12 C 0.086 3.914 13 H 0.045 0.955 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.057 4.057 29 C -0.117 4.117 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.349 0.651 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.139 0.861 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.622 -21.074 -12.247 31.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.037 4.037 4 C -0.142 4.142 5 C -0.102 4.102 6 C -0.136 4.136 7 C 0.341 3.659 8 O -0.408 6.408 9 N -0.376 5.376 10 C -0.011 4.011 11 C -0.171 4.171 12 C -0.025 4.025 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.076 4.076 29 C -0.135 4.135 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.171 0.829 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.157 0.843 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.219 -20.820 -11.355 31.164 hybrid contribution 0.863 -0.060 -0.225 0.894 sum -19.356 -20.880 -11.580 30.736 Atomic orbital electron populations 1.24481 0.95664 1.02534 0.98063 1.21853 0.95303 0.95772 1.01281 1.19337 0.93438 0.93307 0.97599 1.21213 1.00155 0.91467 1.01333 1.21213 0.92923 0.98465 0.97595 1.20036 0.93662 0.93712 1.06186 1.18268 0.87315 0.83735 0.76553 1.90823 1.13367 1.87529 1.49119 1.45871 1.10304 1.05736 1.75644 1.21520 0.95031 0.81594 1.02977 1.21986 0.98423 0.93176 1.03481 1.21452 0.95421 0.93897 0.91686 0.93699 1.21783 0.98894 0.97935 1.01071 1.60204 1.24874 1.18127 1.26889 1.21725 0.91522 0.98452 0.96581 1.19818 0.83297 0.84494 0.89756 1.90519 1.68580 1.49407 1.38232 1.41852 1.23268 1.42086 1.12833 1.19661 1.06398 1.26949 0.89913 0.87993 1.25252 0.97374 0.96412 0.98870 1.69606 1.24968 1.30695 1.29098 0.85917 0.78594 0.78251 0.81448 1.19932 1.20992 1.19914 1.21258 1.01063 0.90699 0.94567 1.21269 0.93168 0.98289 1.00769 0.87511 0.87871 0.86086 0.85098 0.85442 0.76568 0.90683 0.91253 0.90622 0.90000 0.91848 0.92375 0.92901 0.82934 0.93833 0.89586 0.77471 0.91865 0.84313 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 14.15 28.84 0.41 -0.32 16 2 C -0.12 -0.67 9.90 -37.62 -0.37 -1.05 16 3 C -0.04 -0.26 5.87 -104.95 -0.62 -0.88 16 4 C -0.12 -0.82 9.38 -39.27 -0.37 -1.19 16 5 C -0.08 -0.61 9.52 -39.25 -0.37 -0.98 16 6 C -0.13 -1.33 5.88 -104.91 -0.62 -1.95 16 7 C 0.55 6.88 7.77 -12.40 -0.10 6.79 16 8 O -0.53 -8.85 16.33 5.30 0.09 -8.76 16 9 N -0.72 -7.09 5.51 -61.30 -0.34 -7.43 16 10 C 0.11 1.25 5.50 -4.04 -0.02 1.22 16 11 C -0.13 -1.23 4.92 -26.73 -0.13 -1.36 16 12 C 0.09 1.01 2.65 -67.72 -0.18 0.83 16 13 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 14 C -0.14 -1.50 9.41 37.15 0.35 -1.15 16 15 N -0.67 -10.77 5.93 -107.99 -0.64 -11.41 16 16 C 0.05 0.90 5.97 -4.98 -0.03 0.87 16 17 C 0.44 10.72 7.82 -10.98 -0.09 10.63 16 18 O -0.58 -16.28 15.78 5.55 0.09 -16.19 16 19 N -0.56 -14.67 5.29 -10.96 -0.06 -14.72 16 20 C -0.30 -8.56 9.68 -14.93 -0.14 -8.71 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 24 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 C -0.06 -0.55 9.58 -39.25 -0.38 -0.93 16 29 C -0.12 -0.90 9.76 -39.26 -0.38 -1.28 16 30 H 0.11 0.30 8.06 -52.49 -0.42 -0.12 16 31 H 0.10 0.37 6.02 -52.48 -0.32 0.05 16 32 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 33 H 0.13 0.57 6.15 -52.48 -0.32 0.25 16 34 H 0.13 0.59 6.38 -52.48 -0.34 0.26 16 35 H 0.40 2.62 6.49 -40.82 -0.26 2.35 16 36 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.35 5.99 6.17 -39.29 -0.24 5.75 16 44 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 45 H 0.09 1.43 7.44 -51.93 -0.39 1.05 16 46 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 47 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.14 1.39 7.64 -52.49 -0.40 0.99 16 49 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -35.26 410.29 -9.14 -44.40 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -7.03 Total: 14.62 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -3.13 Total: 1.08 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.31 Total: -57.82 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.17 Total: -24.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.26 -9.14 -44.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317410204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.172 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds