Wall clock time and date at job start Wed Apr 1 2020 04:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32684 * 1 3 3 C 1.47668 * 119.99646 * 2 1 4 4 C 1.39706 * 120.00052 * 359.72762 * 3 2 1 5 5 C 1.37598 * 120.00605 * 179.76197 * 4 3 2 6 6 C 1.39745 * 119.99600 * 0.50977 * 5 4 3 7 7 C 1.47688 * 120.00723 * 179.71723 * 6 5 4 8 8 O 1.21573 * 120.00061 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00022 * 0.02615 * 7 6 5 10 10 C 1.46499 * 120.00098 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46996 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47310 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.46664 * 55.00245 * 12 11 10 14 14 C 1.52992 * 109.47388 * 175.00209 * 12 11 10 15 15 N 1.46902 * 109.47018 * 295.00920 * 12 11 10 16 16 C 1.46900 * 111.00047 * 154.99766 * 15 12 11 17 17 C 1.50702 * 109.47118 * 179.97438 * 16 15 12 18 18 O 1.21286 * 119.99831 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99835 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99837 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99858 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99981 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00031 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47176 * 59.99869 * 24 22 20 26 26 H 1.48497 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47081 * 300.00098 * 24 22 20 28 28 C 1.39747 * 119.98983 * 359.74150 * 6 5 4 29 29 C 1.37603 * 119.99749 * 0.02562 * 28 6 5 30 30 H 1.07997 * 120.00240 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99698 * 359.72031 * 1 2 3 32 32 H 1.07999 * 119.99987 * 180.02562 * 2 1 3 33 33 H 1.08005 * 119.99757 * 359.97438 * 4 3 2 34 34 H 1.08005 * 120.00547 * 180.25194 * 5 4 3 35 35 H 0.97000 * 119.99531 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47152 * 300.00165 * 10 9 7 37 37 H 1.09000 * 109.46647 * 60.00396 * 10 9 7 38 38 H 1.08993 * 109.47700 * 300.00504 * 11 10 9 39 39 H 1.09005 * 109.47099 * 60.00456 * 11 10 9 40 40 H 1.09003 * 109.47188 * 60.00357 * 14 12 11 41 41 H 1.09005 * 109.47282 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.47487 * 300.00349 * 14 12 11 43 43 H 1.00897 * 111.00199 * 31.03623 * 15 12 11 44 44 H 1.08999 * 109.47113 * 299.99876 * 16 15 12 45 45 H 1.09004 * 109.46989 * 59.99619 * 16 15 12 46 46 H 0.97007 * 120.00025 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99841 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.00394 * 179.97438 * 28 6 5 49 49 H 1.07994 * 119.99855 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 1.3665 2.4887 -0.0058 5 6 2.0543 3.6805 -0.0008 6 6 3.4517 3.6806 -0.0008 7 6 4.1902 4.9596 -0.0018 8 8 5.4059 4.9596 -0.0022 9 7 3.5163 6.1269 -0.0022 10 6 4.2488 7.3956 -0.0026 11 6 3.2546 8.5585 -0.0036 12 6 4.0195 9.8835 -0.0047 13 1 4.7117 9.9027 -0.8466 14 6 3.0301 11.0435 -0.1314 15 7 4.7714 10.0159 1.2503 16 6 5.9299 10.9027 1.0790 17 6 6.6745 11.0143 2.3844 18 8 6.2787 10.4146 3.3615 19 7 7.7797 11.7814 2.4664 20 6 8.4568 11.8834 3.6541 21 1 8.1047 11.3487 4.5240 22 6 9.5965 12.6738 3.7385 23 7 10.0250 13.3239 2.6799 24 14 10.5194 12.8122 5.3566 25 1 10.9842 11.4663 5.7781 26 1 11.6902 13.7090 5.1835 27 1 9.6171 13.3717 6.3948 28 6 4.1504 2.4703 -0.0003 29 6 3.4623 1.2787 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9354 0.0046 32 1 1.8668 -0.9353 -0.0004 33 1 0.2865 2.4886 -0.0106 34 1 1.5142 4.6158 -0.0011 35 1 2.5463 6.1268 -0.0022 36 1 4.8755 7.4536 0.8873 37 1 4.8754 7.4530 -0.8927 38 1 2.6282 8.5003 -0.8937 39 1 2.6276 8.5012 0.8862 40 1 2.3379 11.0243 0.7104 41 1 3.5751 11.9876 -0.1327 42 1 2.4722 10.9453 -1.0627 43 1 5.0557 9.1126 1.5986 44 1 6.5920 10.4921 0.3166 45 1 5.5887 11.8907 0.7700 46 1 8.0961 12.2613 1.6850 47 1 10.8208 13.8753 2.7387 48 1 5.2304 2.4702 -0.0008 49 1 4.0022 0.3434 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317410204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:45 Heat of formation + Delta-G solvation = -58.646605 kcal Electronic energy + Delta-G solvation = -28206.870542 eV Core-core repulsion = 24132.792133 eV Total energy + Delta-G solvation = -4074.078409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.32491 -40.25909 -39.61525 -38.38243 -36.12356 -35.79202 -35.12880 -33.35034 -32.76600 -32.01416 -30.86938 -29.54945 -28.07779 -26.02150 -25.39045 -23.88194 -23.65649 -22.02995 -21.30643 -21.10858 -20.55369 -19.93534 -19.09023 -17.93192 -17.52309 -17.02782 -16.95832 -16.63444 -16.43238 -16.12803 -15.98226 -15.82569 -15.62719 -15.27814 -15.07611 -14.69443 -14.47068 -14.20510 -14.17929 -14.06117 -13.79413 -13.51347 -13.35967 -13.23462 -13.14217 -12.87659 -12.59719 -12.45334 -12.28726 -12.27972 -12.19805 -12.11946 -11.82067 -11.76733 -11.51881 -11.34902 -11.11819 -10.36693 -10.25574 -10.04767 -10.03340 -9.33587 -9.22147 -8.47894 -5.96967 -0.47800 0.37620 1.25708 1.38576 1.40056 1.51416 2.01227 2.03397 2.04902 2.28205 2.92278 2.93196 3.18990 3.49602 3.58357 3.71528 3.80820 3.84631 3.92975 3.97564 4.09400 4.29201 4.31822 4.32322 4.43147 4.44515 4.47705 4.52599 4.60260 4.65675 4.73989 4.92525 4.95794 5.00058 5.00512 5.03653 5.18395 5.22050 5.27109 5.33611 5.34811 5.39012 5.47948 5.65426 5.79855 5.89123 5.90325 6.12474 6.39445 6.43872 6.58561 7.10757 7.11108 7.54128 8.09734 8.69302 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.001662 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.014734 B =16848.046114 C =18080.445011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C -0.034 4.034 4 C -0.128 4.128 5 C -0.075 4.075 6 C -0.159 4.159 7 C 0.549 3.451 8 O -0.588 6.588 9 N -0.707 5.707 10 C 0.115 3.885 11 C -0.117 4.117 12 C 0.082 3.918 13 H 0.052 0.948 14 C -0.135 4.135 15 N -0.680 5.680 16 C 0.065 3.935 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.338 4.338 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.994 3.006 25 H -0.274 1.274 26 H -0.268 1.268 27 H -0.271 1.271 28 C -0.076 4.076 29 C -0.125 4.125 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.417 0.583 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.083 0.917 43 H 0.340 0.660 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.120 0.880 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.457 -21.536 -13.297 34.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C -0.034 4.034 4 C -0.145 4.145 5 C -0.093 4.093 6 C -0.162 4.162 7 C 0.338 3.662 8 O -0.469 6.469 9 N -0.359 5.359 10 C -0.009 4.009 11 C -0.155 4.155 12 C -0.027 4.027 13 H 0.070 0.930 14 C -0.193 4.193 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.467 4.467 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.196 1.196 28 C -0.095 4.095 29 C -0.143 4.143 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.148 0.852 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.160 0.840 44 H 0.079 0.921 45 H 0.124 0.876 46 H 0.230 0.770 47 H 0.088 0.912 48 H 0.138 0.862 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.111 -21.257 -12.444 33.776 hybrid contribution 1.613 -0.013 0.067 1.614 sum -21.499 -21.270 -12.377 32.677 Atomic orbital electron populations 1.24774 0.95241 1.03852 0.95114 1.21940 0.95914 0.95328 1.03355 1.19671 0.93246 0.94603 0.95915 1.21576 1.01584 0.90838 1.00516 1.21482 0.91584 1.00173 0.96086 1.19955 0.94917 0.92336 1.08998 1.18763 0.86859 0.85089 0.75495 1.90784 1.15806 1.88340 1.52018 1.45709 1.11149 1.04689 1.74368 1.21401 0.95497 0.82944 1.01059 1.21899 0.97663 0.90618 1.05320 1.21640 0.95530 0.95815 0.89751 0.92982 1.21773 0.98451 0.96652 1.02433 1.60262 1.24035 1.17383 1.29748 1.21581 0.92019 1.00230 0.92965 1.20925 0.82604 0.82660 0.91499 1.90482 1.69485 1.50640 1.40482 1.41925 1.23902 1.42782 1.12342 1.19646 1.08092 1.28542 0.90443 0.90420 1.26048 0.97438 0.95379 1.02306 1.69666 1.25268 1.30525 1.30530 0.84981 0.77608 0.78349 0.77338 1.19896 1.19255 1.19608 1.21270 1.00519 0.91811 0.95885 1.21441 0.93900 0.98085 1.00880 0.85886 0.86906 0.85190 0.82238 0.82648 0.74398 0.93952 0.92042 0.87038 0.89716 0.92484 0.93521 0.89803 0.83965 0.92102 0.87644 0.76977 0.91245 0.86160 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 14.15 66.65 0.94 0.15 16 2 C -0.15 -1.26 9.90 23.59 0.23 -1.03 16 3 C -0.03 -0.43 5.87 -20.07 -0.12 -0.55 16 4 C -0.13 -1.38 9.38 22.47 0.21 -1.17 16 5 C -0.07 -0.96 9.52 22.48 0.21 -0.75 16 6 C -0.16 -3.26 5.88 -20.05 -0.12 -3.37 16 7 C 0.55 14.31 7.77 86.74 0.67 14.98 16 8 O -0.59 -21.30 16.33 -3.94 -0.06 -21.36 16 9 N -0.71 -13.58 5.51 -466.13 -2.57 -16.14 16 10 C 0.12 2.56 5.50 86.38 0.48 3.03 16 11 C -0.12 -1.91 4.92 30.59 0.15 -1.76 16 12 C 0.08 1.79 2.65 44.91 0.12 1.91 16 13 H 0.05 1.09 7.80 -2.39 -0.02 1.07 16 14 C -0.14 -2.56 9.41 71.98 0.68 -1.89 16 15 N -0.68 -21.88 5.93 -495.57 -2.94 -24.82 16 16 C 0.06 2.33 5.97 85.56 0.51 2.84 16 17 C 0.44 21.77 7.82 87.66 0.69 22.46 16 18 O -0.62 -36.24 15.78 -3.05 -0.05 -36.29 16 19 N -0.57 -30.63 5.29 -306.98 -1.62 -32.25 16 20 C -0.34 -19.90 9.68 84.04 0.81 -19.09 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -50.82 13.05 21.66 0.28 -50.53 16 24 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 C -0.08 -1.58 9.58 22.48 0.22 -1.36 16 29 C -0.13 -1.93 9.76 22.48 0.22 -1.71 16 30 H 0.12 0.25 8.06 -2.91 -0.02 0.23 16 31 H 0.11 0.34 6.02 -2.91 -0.02 0.32 16 32 H 0.13 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.16 0.75 6.15 -2.91 -0.02 0.74 16 34 H 0.16 0.96 6.38 -2.91 -0.02 0.94 16 35 H 0.42 4.62 6.49 -92.71 -0.60 4.01 16 36 H 0.04 1.24 6.43 -2.39 -0.02 1.22 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 0.99 7.45 -2.38 -0.02 0.97 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.34 12.03 6.17 -89.70 -0.55 11.48 16 44 H 0.06 1.99 8.06 -2.39 -0.02 1.98 16 45 H 0.11 3.41 7.44 -2.38 -0.02 3.39 16 46 H 0.40 20.09 7.90 -92.70 -0.73 19.36 16 47 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 48 H 0.12 2.81 7.64 -2.91 -0.02 2.79 16 49 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -80.73 410.29 0.55 -80.18 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: -0.89 Total: 42.47 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.37 Total: 12.50 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -6.85 Total: -123.75 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -0.11 Total: -57.65 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -80.73 0.55 -80.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317410204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.532 kcal (2) G-P(sol) polarization free energy of solvation -80.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds