Wall clock time and date at job start Wed Apr 1 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32680 * 1 3 3 C 1.47673 * 120.00227 * 2 1 4 4 C 1.39711 * 119.99490 * 179.97438 * 3 2 1 5 5 C 1.37608 * 120.00238 * 180.02562 * 4 3 2 6 6 C 1.39741 * 119.99174 * 359.97438 * 5 4 3 7 7 C 1.47688 * 120.00042 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00053 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00116 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99980 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47067 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47214 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47446 * 305.00593 * 12 11 10 14 14 C 1.52995 * 109.47146 * 184.99844 * 12 11 10 15 15 N 1.46906 * 109.46965 * 65.00211 * 12 11 10 16 16 C 1.46898 * 110.99888 * 204.99952 * 15 12 11 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46979 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47480 * 120.00092 * 24 22 20 27 27 H 1.48497 * 109.47080 * 240.00247 * 24 22 20 28 28 C 1.39737 * 119.99824 * 0.25085 * 6 5 4 29 29 C 1.37610 * 119.99440 * 359.51260 * 28 6 5 30 30 H 1.08005 * 119.99536 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00142 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99992 * 179.97438 * 2 1 3 33 33 H 1.07994 * 119.99785 * 0.02562 * 4 3 2 34 34 H 1.07994 * 120.00088 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00033 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.47071 * 60.00092 * 10 9 7 37 37 H 1.09003 * 109.47280 * 299.99975 * 10 9 7 38 38 H 1.09004 * 109.46980 * 60.00176 * 11 10 9 39 39 H 1.09003 * 109.47135 * 300.00167 * 11 10 9 40 40 H 1.09003 * 109.47335 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47311 * 300.00221 * 14 12 11 42 42 H 1.09002 * 109.46959 * 60.00507 * 14 12 11 43 43 H 1.00902 * 110.99923 * 328.95894 * 15 12 11 44 44 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 45 45 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 46 46 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 47 47 H 0.97010 * 119.99812 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.00919 * 179.72653 * 28 6 5 49 49 H 1.07996 * 119.99541 * 180.23214 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2789 0.0000 4 6 3.4623 1.2787 0.0005 5 6 4.1506 2.4703 0.0011 6 6 3.4519 3.6805 0.0005 7 6 4.1904 4.9595 0.0017 8 8 5.4061 4.9595 0.0036 9 7 3.5165 6.1267 0.0006 10 6 4.2491 7.3954 0.0023 11 6 3.2549 8.5584 0.0000 12 6 4.0199 9.8834 0.0024 13 1 4.7099 9.9031 0.8460 14 6 3.0301 11.0435 0.1258 15 7 4.7750 10.0151 -1.2508 16 6 5.9331 10.9019 -1.0769 17 6 6.6810 11.0128 -2.3806 18 8 6.2881 10.4119 -3.3581 19 7 7.7863 11.7798 -2.4601 20 6 8.4671 11.8804 -3.6459 21 1 8.1172 11.3453 -4.5164 22 6 9.6063 12.6715 -3.7281 23 7 10.0316 13.3229 -2.6690 24 14 10.5334 12.8091 -5.3440 25 1 9.8550 11.9841 -6.3757 26 1 10.5579 14.2280 -5.7815 27 1 11.9247 12.3240 -5.1593 28 6 2.0545 3.6805 0.0047 29 6 1.3666 2.4887 -0.0007 30 1 -0.5399 0.9354 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8668 -0.9353 0.0004 33 1 4.0021 0.3433 0.0005 34 1 5.2305 2.4701 0.0019 35 1 2.5465 6.1268 -0.0012 36 1 4.8774 7.4533 -0.8864 37 1 4.8740 7.4530 0.8936 38 1 2.6262 8.5007 0.8886 39 1 2.6303 8.5006 -0.8914 40 1 3.5751 11.9875 0.1271 41 1 2.3402 11.0238 -0.7178 42 1 2.4699 10.9458 1.0557 43 1 5.0601 9.1116 -1.5978 44 1 5.5912 11.8901 -0.7694 45 1 6.5932 10.4918 -0.3127 46 1 8.1008 12.2601 -1.6782 47 1 10.8269 13.8756 -2.7265 48 1 1.5144 4.6157 0.0088 49 1 0.2866 2.4887 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317410210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:50 Heat of formation + Delta-G solvation = -33.339960 kcal Electronic energy + Delta-G solvation = -28206.046230 eV Core-core repulsion = 24133.065199 eV Total energy + Delta-G solvation = -4072.981031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.51607 -38.97407 -38.40477 -37.14707 -34.93079 -34.63207 -33.86106 -31.88732 -31.34418 -31.03185 -30.19979 -28.77228 -26.39738 -24.96593 -23.97122 -23.17319 -22.95201 -21.20185 -20.42314 -19.98735 -19.22828 -18.33813 -17.84972 -16.90288 -16.34897 -16.04158 -15.85051 -15.44039 -15.26173 -15.16037 -14.94742 -14.48261 -14.38236 -13.93731 -13.78288 -13.71645 -13.66650 -13.57435 -13.17861 -13.01548 -12.70620 -12.48843 -12.15436 -11.85291 -11.78441 -11.69005 -11.56177 -11.37818 -11.30053 -11.22636 -11.05405 -10.84202 -10.77084 -10.31029 -10.18703 -10.13849 -9.48077 -9.46463 -9.32519 -8.70652 -8.40623 -8.04225 -7.91737 -6.37906 -3.78462 0.12396 0.95131 1.78877 2.76297 2.87448 3.19535 3.29781 3.37425 3.56660 3.95317 4.12029 4.16653 4.22641 4.34817 4.40045 4.49192 4.61178 4.72063 4.84113 4.87106 4.93584 4.97213 5.14842 5.21253 5.28930 5.33681 5.39211 5.41577 5.53508 5.55614 5.70613 5.72328 5.80751 5.81959 5.84723 5.89206 5.93464 6.02585 6.05209 6.07398 6.17276 6.23958 6.27766 6.37504 6.43159 7.22405 7.26926 7.59308 7.69003 7.97732 8.10797 8.65528 9.22101 9.58697 10.10250 10.79968 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.001661 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.095739 B =16848.869237 C =18082.135902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.037 4.037 4 C -0.117 4.117 5 C -0.057 4.057 6 C -0.133 4.133 7 C 0.554 3.446 8 O -0.531 6.531 9 N -0.723 5.723 10 C 0.112 3.888 11 C -0.133 4.133 12 C 0.086 3.914 13 H 0.045 0.955 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.083 4.083 29 C -0.124 4.124 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.349 0.651 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.128 0.872 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.702 -21.100 12.208 31.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.037 4.037 4 C -0.135 4.135 5 C -0.076 4.076 6 C -0.136 4.136 7 C 0.341 3.659 8 O -0.408 6.408 9 N -0.376 5.376 10 C -0.011 4.011 11 C -0.171 4.171 12 C -0.025 4.025 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.083 4.083 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.102 4.102 29 C -0.142 4.142 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.171 0.829 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.146 0.854 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.304 -20.855 11.309 31.226 hybrid contribution 0.877 -0.042 0.246 0.912 sum -19.428 -20.897 11.555 30.784 Atomic orbital electron populations 1.24480 0.95664 1.02533 0.98064 1.21853 0.95303 0.95773 1.01280 1.19338 0.93438 0.93307 0.97603 1.21269 0.93167 0.98290 1.00766 1.21256 1.01063 0.90699 0.94569 1.20031 0.93662 0.93712 1.06183 1.18270 0.87316 0.83736 0.76552 1.90825 1.13364 1.87531 1.49121 1.45871 1.10305 1.05736 1.75642 1.21520 0.95033 0.81596 1.02976 1.21988 0.98419 0.93174 1.03485 1.21453 0.95400 0.93901 0.91705 0.93695 1.21784 0.98886 0.97933 1.01082 1.60208 1.24740 1.18112 1.27036 1.21725 0.91529 0.98458 0.96578 1.19822 0.83290 0.84467 0.89749 1.90521 1.68712 1.49322 1.38143 1.41868 1.23210 1.42103 1.12930 1.19761 1.06231 1.26768 0.90009 0.87880 1.25253 0.97417 0.96436 0.98862 1.69626 1.25028 1.30712 1.28997 0.85803 0.79033 0.77995 0.81530 1.19233 1.20768 1.20791 1.21213 0.92924 0.98465 0.97601 1.21216 1.00153 0.91468 1.01328 0.87872 0.87510 0.86087 0.85020 0.84312 0.76567 0.90690 0.91246 0.90623 0.89996 0.92374 0.91852 0.92895 0.82933 0.89582 0.93825 0.77478 0.91973 0.85443 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 14.15 28.84 0.41 -0.32 16 2 C -0.12 -0.67 9.90 -37.62 -0.37 -1.05 16 3 C -0.04 -0.26 5.87 -104.95 -0.62 -0.88 16 4 C -0.12 -0.90 9.76 -39.26 -0.38 -1.28 16 5 C -0.06 -0.55 9.58 -39.25 -0.38 -0.93 16 6 C -0.13 -1.33 5.88 -104.92 -0.62 -1.94 16 7 C 0.55 6.88 7.77 -12.40 -0.10 6.78 16 8 O -0.53 -8.84 16.33 5.30 0.09 -8.76 16 9 N -0.72 -7.09 5.51 -61.30 -0.34 -7.43 16 10 C 0.11 1.25 5.50 -4.04 -0.02 1.22 16 11 C -0.13 -1.22 4.92 -26.73 -0.13 -1.36 16 12 C 0.09 1.01 2.65 -67.71 -0.18 0.83 16 13 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 14 C -0.14 -1.50 9.41 37.16 0.35 -1.15 16 15 N -0.67 -10.76 5.93 -107.99 -0.64 -11.40 16 16 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 17 C 0.44 10.72 7.82 -10.98 -0.09 10.63 16 18 O -0.58 -16.26 15.78 5.55 0.09 -16.18 16 19 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 20 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.10 7.16 -52.48 -0.38 2.72 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 24 Si 0.93 21.51 29.55 -169.99 -5.02 16.48 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C -0.08 -0.61 9.52 -39.25 -0.37 -0.98 16 29 C -0.12 -0.82 9.38 -39.26 -0.37 -1.19 16 30 H 0.10 0.37 6.02 -52.48 -0.32 0.05 16 31 H 0.11 0.30 8.06 -52.49 -0.42 -0.12 16 32 H 0.12 0.50 8.06 -52.48 -0.42 0.07 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.14 1.39 7.64 -52.49 -0.40 0.99 16 35 H 0.40 2.61 6.49 -40.82 -0.26 2.35 16 36 H 0.07 1.03 6.42 -51.93 -0.33 0.69 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.35 5.98 6.17 -39.29 -0.24 5.74 16 44 H 0.09 1.43 7.43 -51.93 -0.39 1.05 16 45 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 46 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.13 0.59 6.38 -52.49 -0.34 0.26 16 49 H 0.13 0.57 6.15 -52.49 -0.32 0.25 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -35.31 410.29 -9.14 -44.45 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -7.03 Total: 14.54 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -3.13 Total: 1.10 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.31 Total: -57.82 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.17 Total: -24.93 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.31 -9.14 -44.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317410210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.109 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds