Wall clock time and date at job start Wed Apr 1 2020 04:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32680 * 1 3 3 C 1.47673 * 120.00227 * 2 1 4 4 C 1.39711 * 119.99490 * 179.97438 * 3 2 1 5 5 C 1.37608 * 120.00238 * 180.02562 * 4 3 2 6 6 C 1.39741 * 119.99174 * 359.97438 * 5 4 3 7 7 C 1.47688 * 120.00042 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00053 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00116 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99980 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47067 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47214 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47446 * 305.00593 * 12 11 10 14 14 C 1.52995 * 109.47146 * 184.99844 * 12 11 10 15 15 N 1.46906 * 109.46965 * 65.00211 * 12 11 10 16 16 C 1.46898 * 110.99888 * 204.99952 * 15 12 11 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46979 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47480 * 120.00092 * 24 22 20 27 27 H 1.48497 * 109.47080 * 240.00247 * 24 22 20 28 28 C 1.39737 * 119.99824 * 0.25085 * 6 5 4 29 29 C 1.37610 * 119.99440 * 359.51260 * 28 6 5 30 30 H 1.08005 * 119.99536 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00142 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99992 * 179.97438 * 2 1 3 33 33 H 1.07994 * 119.99785 * 0.02562 * 4 3 2 34 34 H 1.07994 * 120.00088 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00033 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.47071 * 60.00092 * 10 9 7 37 37 H 1.09003 * 109.47280 * 299.99975 * 10 9 7 38 38 H 1.09004 * 109.46980 * 60.00176 * 11 10 9 39 39 H 1.09003 * 109.47135 * 300.00167 * 11 10 9 40 40 H 1.09003 * 109.47335 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47311 * 300.00221 * 14 12 11 42 42 H 1.09002 * 109.46959 * 60.00507 * 14 12 11 43 43 H 1.00902 * 110.99923 * 328.95894 * 15 12 11 44 44 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 45 45 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 46 46 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 47 47 H 0.97010 * 119.99812 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.00919 * 179.72653 * 28 6 5 49 49 H 1.07996 * 119.99541 * 180.23214 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2789 0.0000 4 6 3.4623 1.2787 0.0005 5 6 4.1506 2.4703 0.0011 6 6 3.4519 3.6805 0.0005 7 6 4.1904 4.9595 0.0017 8 8 5.4061 4.9595 0.0036 9 7 3.5165 6.1267 0.0006 10 6 4.2491 7.3954 0.0023 11 6 3.2549 8.5584 0.0000 12 6 4.0199 9.8834 0.0024 13 1 4.7099 9.9031 0.8460 14 6 3.0301 11.0435 0.1258 15 7 4.7750 10.0151 -1.2508 16 6 5.9331 10.9019 -1.0769 17 6 6.6810 11.0128 -2.3806 18 8 6.2881 10.4119 -3.3581 19 7 7.7863 11.7798 -2.4601 20 6 8.4671 11.8804 -3.6459 21 1 8.1172 11.3453 -4.5164 22 6 9.6063 12.6715 -3.7281 23 7 10.0316 13.3229 -2.6690 24 14 10.5334 12.8091 -5.3440 25 1 9.8550 11.9841 -6.3757 26 1 10.5579 14.2280 -5.7815 27 1 11.9247 12.3240 -5.1593 28 6 2.0545 3.6805 0.0047 29 6 1.3666 2.4887 -0.0007 30 1 -0.5399 0.9354 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8668 -0.9353 0.0004 33 1 4.0021 0.3433 0.0005 34 1 5.2305 2.4701 0.0019 35 1 2.5465 6.1268 -0.0012 36 1 4.8774 7.4533 -0.8864 37 1 4.8740 7.4530 0.8936 38 1 2.6262 8.5007 0.8886 39 1 2.6303 8.5006 -0.8914 40 1 3.5751 11.9875 0.1271 41 1 2.3402 11.0238 -0.7178 42 1 2.4699 10.9458 1.0557 43 1 5.0601 9.1116 -1.5978 44 1 5.5912 11.8901 -0.7694 45 1 6.5932 10.4918 -0.3127 46 1 8.1008 12.2601 -1.6782 47 1 10.8269 13.8756 -2.7265 48 1 1.5144 4.6157 0.0088 49 1 0.2866 2.4887 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317410210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:49 Heat of formation + Delta-G solvation = -58.817763 kcal Electronic energy + Delta-G solvation = -28207.151030 eV Core-core repulsion = 24133.065199 eV Total energy + Delta-G solvation = -4074.085831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.32455 -40.26142 -39.61487 -38.38251 -36.12511 -35.79327 -35.12902 -33.35224 -32.76630 -32.01387 -30.86950 -29.54938 -28.08045 -26.02401 -25.39138 -23.88190 -23.65680 -22.02989 -21.30673 -21.11142 -20.55365 -19.93797 -19.09020 -17.93382 -17.52409 -17.03109 -16.95741 -16.63814 -16.43555 -16.12266 -15.98235 -15.82615 -15.62323 -15.28171 -15.07755 -14.69571 -14.47023 -14.20521 -14.17930 -14.06524 -13.79394 -13.52905 -13.36020 -13.23434 -13.14257 -12.88375 -12.59877 -12.43257 -12.28509 -12.27499 -12.19814 -12.11936 -11.82081 -11.76742 -11.53102 -11.34913 -11.11787 -10.36879 -10.25571 -10.04713 -10.03273 -9.33629 -9.22182 -8.48456 -5.97384 -0.47754 0.37586 1.25724 1.35122 1.40074 1.54680 2.01213 2.03023 2.04912 2.27955 2.92179 2.93187 3.18558 3.49492 3.58346 3.71556 3.80841 3.84636 3.92991 3.97550 4.09460 4.29115 4.31833 4.32321 4.43118 4.44520 4.47678 4.52606 4.60241 4.65682 4.74018 4.92532 4.95799 5.00100 5.00535 5.03632 5.18408 5.22039 5.27116 5.33623 5.34813 5.39293 5.47993 5.65434 5.79869 5.89133 5.90364 6.12495 6.39376 6.43890 6.58247 7.10755 7.11116 7.53972 8.09514 8.69217 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.001661 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.095739 B =16848.869237 C =18082.135902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C -0.034 4.034 4 C -0.125 4.125 5 C -0.076 4.076 6 C -0.159 4.159 7 C 0.549 3.451 8 O -0.588 6.588 9 N -0.707 5.707 10 C 0.115 3.885 11 C -0.117 4.117 12 C 0.082 3.918 13 H 0.052 0.948 14 C -0.135 4.135 15 N -0.680 5.680 16 C 0.064 3.936 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.275 1.275 26 H -0.268 1.268 27 H -0.271 1.271 28 C -0.075 4.075 29 C -0.128 4.128 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.417 0.583 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.340 0.660 44 H 0.106 0.894 45 H 0.061 0.939 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.156 0.844 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.510 -21.532 13.279 34.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C -0.034 4.034 4 C -0.143 4.143 5 C -0.095 4.095 6 C -0.162 4.162 7 C 0.338 3.662 8 O -0.469 6.469 9 N -0.359 5.359 10 C -0.009 4.009 11 C -0.155 4.155 12 C -0.027 4.027 13 H 0.070 0.930 14 C -0.193 4.193 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.196 1.196 28 C -0.093 4.093 29 C -0.145 4.145 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.165 0.835 34 H 0.138 0.862 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.160 0.840 44 H 0.124 0.876 45 H 0.079 0.921 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.174 0.826 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -23.168 -21.260 12.421 33.809 hybrid contribution 1.622 -0.002 -0.054 1.623 sum -21.546 -21.262 12.367 32.700 Atomic orbital electron populations 1.24773 0.95241 1.03852 0.95117 1.21941 0.95914 0.95329 1.03354 1.19671 0.93246 0.94602 0.95920 1.21440 0.93899 0.98086 1.00878 1.21268 1.00518 0.91810 0.95887 1.19951 0.94917 0.92337 1.08995 1.18765 0.86860 0.85089 0.75496 1.90785 1.15803 1.88342 1.52020 1.45709 1.11149 1.04689 1.74366 1.21402 0.95495 0.82944 1.01061 1.21901 0.97665 0.90618 1.05317 1.21642 0.95500 0.95817 0.89778 0.92973 1.21774 0.98448 0.96650 1.02438 1.60266 1.23910 1.17367 1.29891 1.21581 0.92011 1.00238 0.92967 1.20930 0.82607 0.82632 0.91483 1.90485 1.69622 1.50566 1.40401 1.41936 1.23839 1.42798 1.12432 1.19713 1.07939 1.28369 0.90498 0.90449 1.26046 0.97485 0.95401 1.02279 1.69682 1.25383 1.30557 1.30425 0.84862 0.77785 0.78376 0.77238 1.19932 1.19325 1.19598 1.21482 0.91584 1.00173 0.96088 1.21579 1.01582 0.90840 1.00513 0.86906 0.85886 0.85192 0.83510 0.86158 0.74397 0.93962 0.92031 0.87035 0.89719 0.93519 0.92491 0.89796 0.83966 0.87636 0.92089 0.76975 0.91262 0.82646 0.82240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 14.15 66.65 0.94 0.15 16 2 C -0.15 -1.26 9.90 23.59 0.23 -1.03 16 3 C -0.03 -0.43 5.87 -20.07 -0.12 -0.55 16 4 C -0.13 -1.93 9.76 22.48 0.22 -1.71 16 5 C -0.08 -1.58 9.58 22.48 0.22 -1.36 16 6 C -0.16 -3.25 5.88 -20.06 -0.12 -3.37 16 7 C 0.55 14.30 7.77 86.74 0.67 14.98 16 8 O -0.59 -21.29 16.33 -3.96 -0.06 -21.35 16 9 N -0.71 -13.57 5.51 -466.12 -2.57 -16.14 16 10 C 0.12 2.55 5.50 86.38 0.48 3.03 16 11 C -0.12 -1.91 4.92 30.59 0.15 -1.76 16 12 C 0.08 1.79 2.65 44.91 0.12 1.91 16 13 H 0.05 1.09 7.80 -2.39 -0.02 1.07 16 14 C -0.14 -2.56 9.41 71.98 0.68 -1.88 16 15 N -0.68 -21.88 5.93 -495.58 -2.94 -24.82 16 16 C 0.06 2.32 5.97 85.56 0.51 2.83 16 17 C 0.44 21.79 7.82 87.66 0.69 22.47 16 18 O -0.62 -36.26 15.78 -3.05 -0.05 -36.31 16 19 N -0.57 -30.65 5.29 -306.99 -1.62 -32.27 16 20 C -0.34 -19.79 9.68 84.04 0.81 -18.98 16 21 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 22 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 23 N -0.92 -50.84 13.05 21.66 0.28 -50.56 16 24 Si 0.99 44.27 29.55 68.60 2.03 46.30 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 28 C -0.07 -0.96 9.52 22.48 0.21 -0.75 16 29 C -0.13 -1.38 9.38 22.48 0.21 -1.17 16 30 H 0.11 0.34 6.02 -2.91 -0.02 0.32 16 31 H 0.12 0.25 8.06 -2.91 -0.02 0.23 16 32 H 0.13 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.12 2.81 7.64 -2.91 -0.02 2.79 16 35 H 0.42 4.61 6.49 -92.71 -0.60 4.01 16 36 H 0.04 1.23 6.42 -2.39 -0.02 1.22 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 0.99 7.45 -2.39 -0.02 0.97 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.34 12.03 6.17 -89.69 -0.55 11.48 16 44 H 0.11 3.41 7.43 -2.39 -0.02 3.39 16 45 H 0.06 2.00 8.05 -2.39 -0.02 1.98 16 46 H 0.40 20.08 7.90 -92.71 -0.73 19.35 16 47 H 0.28 14.30 8.31 -92.70 -0.77 13.53 16 48 H 0.16 0.96 6.38 -2.91 -0.02 0.94 16 49 H 0.16 0.75 6.15 -2.91 -0.02 0.74 16 Total: -1.00 -80.89 410.29 0.55 -80.34 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: -0.89 Total: 42.21 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.37 Total: 12.60 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.85 Total: -123.78 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -0.11 Total: -57.66 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -80.89 0.55 -80.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317410210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.517 kcal (2) G-P(sol) polarization free energy of solvation -80.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds