Wall clock time and date at job start Wed Apr 1 2020 03:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46848 * 2 1 4 4 N 1.46505 * 109.47390 * 119.99766 * 2 1 3 5 5 C 1.34769 * 120.00246 * 275.00669 * 4 2 1 6 6 O 1.21593 * 119.99870 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00209 * 179.97438 * 5 4 2 8 8 C 1.40020 * 120.00091 * 174.74445 * 7 5 4 9 9 C 1.38918 * 120.00038 * 326.14282 * 8 7 5 10 10 C 1.38010 * 119.99508 * 179.78968 * 9 8 7 11 11 C 1.38903 * 120.00353 * 0.46788 * 10 9 8 12 12 O 1.35788 * 119.99906 * 179.76696 * 11 10 9 13 13 C 1.34819 * 116.99646 * 185.94337 * 12 11 10 14 14 H 1.08002 * 119.99903 * 5.40158 * 13 12 11 15 15 C 1.38627 * 119.99894 * 185.40841 * 13 12 11 16 16 N 1.31568 * 120.00443 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99820 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47146 * 90.00033 * 17 15 13 19 19 H 1.48498 * 109.46901 * 210.00047 * 17 15 13 20 20 H 1.48504 * 109.46953 * 330.00075 * 17 15 13 21 21 C 1.38908 * 120.00030 * 359.78560 * 11 10 9 22 22 C 1.38004 * 119.99811 * 359.97438 * 21 11 10 23 23 C 1.50697 * 109.47453 * 240.00322 * 2 1 3 24 24 C 1.29822 * 118.55644 * 114.99594 * 23 2 1 25 25 C 1.50137 * 123.28587 * 180.37184 * 24 23 2 26 26 N 1.46846 * 110.14432 * 343.03292 * 25 24 23 27 27 C 1.46896 * 110.99937 * 287.45347 * 26 25 24 28 28 C 1.46907 * 110.38346 * 50.98658 * 26 25 24 29 29 C 1.50303 * 118.55171 * 295.01936 * 23 2 1 30 30 H 1.08997 * 109.47282 * 299.99671 * 1 2 3 31 31 H 1.08994 * 109.47539 * 59.99966 * 1 2 3 32 32 H 1.09003 * 109.46848 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99149 * 95.00441 * 4 2 1 34 34 H 0.96999 * 119.99880 * 354.74671 * 7 5 4 35 35 H 1.07994 * 120.00351 * 0.02965 * 9 8 7 36 36 H 1.08001 * 120.00274 * 180.23388 * 10 9 8 37 37 H 0.96994 * 120.00510 * 179.97438 * 16 15 13 38 38 H 1.07999 * 119.99664 * 179.97438 * 21 11 10 39 39 H 1.08010 * 119.99674 * 179.97438 * 22 21 11 40 40 H 1.08001 * 118.35647 * 0.39718 * 24 23 2 41 41 H 1.09000 * 109.33453 * 103.19943 * 25 24 23 42 42 H 1.09002 * 109.34092 * 222.86374 * 25 24 23 43 43 H 1.09002 * 109.47042 * 56.04676 * 27 26 25 44 44 H 1.08999 * 109.47004 * 176.04694 * 27 26 25 45 45 H 1.08999 * 109.47398 * 296.04997 * 27 26 25 46 46 H 1.08998 * 109.69453 * 171.42410 * 28 26 25 47 47 H 1.09001 * 109.81435 * 50.87375 * 28 26 25 48 48 H 1.09002 * 109.43390 * 283.57569 * 29 23 2 49 49 H 1.08999 * 109.43208 * 43.42572 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8581 1.1616 2.4117 7 7 2.5958 -0.6537 3.4577 8 6 2.8342 0.0673 4.6341 9 6 3.2985 1.3748 4.5655 10 6 3.5293 2.0867 5.7250 11 6 3.3066 1.4928 6.9608 12 8 3.5383 2.1918 8.1016 13 6 3.4212 1.5207 9.2650 14 1 3.2401 0.4560 9.2583 15 6 3.5332 2.1973 10.4698 16 7 3.4185 1.5425 11.6052 17 14 3.8470 4.0388 10.4812 18 1 2.5500 4.7619 10.4804 19 1 4.6157 4.4023 11.6985 20 1 4.6247 4.4158 9.2735 21 6 2.8474 0.1836 7.0295 22 6 2.6119 -0.5267 5.8700 23 6 2.0324 -0.7103 -1.2304 24 6 2.6935 -0.0275 -2.1147 25 6 3.2347 -0.6251 -3.3813 26 7 3.2697 -2.0892 -3.2749 27 6 4.3402 -2.5258 -2.3687 28 6 1.9652 -2.6017 -2.8347 29 6 1.7454 -2.1781 -1.3801 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1525 34 1 2.7537 -1.6105 3.4349 35 1 3.4751 1.8353 3.6048 36 1 3.8866 3.1045 5.6717 37 1 3.4972 2.0158 12.4481 38 1 2.6747 -0.2783 7.9903 39 1 2.2552 -1.5448 5.9234 40 1 2.8631 1.0230 -1.9298 41 1 2.5960 -0.3390 -4.2169 42 1 4.2440 -0.2515 -3.5542 43 1 4.2089 -2.0514 -1.3961 44 1 4.2994 -3.6088 -2.2532 45 1 5.3068 -2.2409 -2.7842 46 1 1.9550 -3.6893 -2.9051 47 1 1.1750 -2.1867 -3.4604 48 1 2.4132 -2.7461 -0.7323 49 1 0.7117 -2.3762 -1.0970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320223276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:27 Heat of formation + Delta-G solvation = 1.817367 kcal Electronic energy + Delta-G solvation = -29432.863936 eV Core-core repulsion = 25361.407441 eV Total energy + Delta-G solvation = -4071.456495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.75014 -39.99664 -38.91555 -37.09613 -35.93170 -34.06567 -32.83681 -32.27830 -31.44836 -30.30254 -30.13588 -27.85798 -27.70344 -25.24535 -24.72037 -23.54701 -22.40594 -22.12742 -21.12544 -20.44384 -18.83235 -18.01010 -17.72015 -17.51292 -17.03885 -16.23780 -15.80979 -15.65659 -15.13861 -14.99396 -14.78364 -14.60053 -14.31792 -13.98215 -13.87425 -13.69447 -13.65184 -13.29513 -13.09375 -12.84378 -12.73814 -12.50472 -12.31809 -12.30765 -12.26296 -12.02248 -11.80445 -11.73174 -11.64767 -11.54907 -11.01873 -10.93098 -10.74611 -10.16881 -10.07268 -9.68347 -9.43426 -9.31775 -9.24246 -8.78065 -8.74375 -8.27414 -7.01261 -6.40133 -4.05701 1.55722 2.07915 2.15627 2.73216 3.22423 3.26433 3.30059 3.43224 3.50164 4.16722 4.19232 4.25179 4.26015 4.50261 4.51726 4.64836 4.77657 4.92681 4.95342 4.96560 5.04342 5.08738 5.10662 5.15567 5.26644 5.32587 5.33679 5.40672 5.47132 5.49694 5.52248 5.62819 5.72663 5.88929 6.02289 6.06261 6.12341 6.17783 6.23989 6.44208 6.51376 6.59505 6.65195 6.71128 6.79963 7.12056 7.18199 7.25379 7.60787 7.79518 7.98200 8.04742 8.61704 8.95537 9.58637 10.67557 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.001797 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.606181 B =15574.404295 C =15697.866891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.199 3.801 3 H 0.092 0.908 4 N -0.741 5.741 5 C 0.701 3.299 6 O -0.575 6.575 7 N -0.676 5.676 8 C 0.067 3.933 9 C -0.070 4.070 10 C -0.175 4.175 11 C 0.150 3.850 12 O -0.218 6.218 13 C -0.388 4.388 14 H 0.106 0.894 15 C 0.062 3.938 16 N -0.881 5.881 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.259 1.259 21 C -0.204 4.204 22 C -0.095 4.095 23 C -0.129 4.129 24 C -0.172 4.172 25 C 0.080 3.920 26 N -0.534 5.534 27 C 0.017 3.983 28 C 0.053 3.947 29 C -0.123 4.123 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.392 0.608 34 H 0.398 0.602 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.279 0.721 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 -9.961 -29.692 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.110 0.890 4 N -0.397 5.397 5 C 0.401 3.599 6 O -0.451 6.451 7 N -0.324 5.324 8 C -0.026 4.026 9 C -0.090 4.090 10 C -0.195 4.195 11 C 0.097 3.903 12 O -0.123 6.123 13 C -0.464 4.464 14 H 0.123 0.877 15 C -0.141 4.141 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.224 4.224 22 C -0.116 4.116 23 C -0.130 4.130 24 C -0.192 4.192 25 C -0.048 4.048 26 N -0.256 5.256 27 C -0.131 4.131 28 C -0.075 4.075 29 C -0.161 4.161 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.226 0.774 34 H 0.232 0.768 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.155 0.845 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.233 -8.812 -29.864 31.217 hybrid contribution -0.035 0.017 1.147 1.148 sum -2.267 -8.795 -28.717 30.119 Atomic orbital electron populations 1.22186 0.94805 1.02132 1.02796 1.19823 0.93972 0.96185 0.80630 0.89023 1.45186 1.72324 1.13544 1.08668 1.15942 0.78310 0.85360 0.80260 1.90946 1.55888 1.14196 1.84071 1.42358 1.69247 1.10950 1.09811 1.17070 1.08093 0.93668 0.83813 1.20612 0.97481 0.93124 0.97829 1.20117 1.09053 1.00816 0.89538 1.19149 0.93474 0.90727 0.86909 1.83603 1.77957 1.38265 1.12445 1.20743 1.50785 0.94560 0.80262 0.87698 1.24462 0.95868 1.00166 0.93570 1.69649 1.47822 1.37073 0.97327 0.86182 0.79144 0.83446 0.78158 1.19915 1.20827 1.18306 1.21082 1.07294 0.95351 0.98656 1.20493 1.00964 0.99447 0.90688 1.20971 0.99716 0.95854 0.96415 1.22869 0.98337 1.00811 0.97172 1.21128 1.01758 0.86805 0.95059 1.62566 1.04472 1.09535 1.49026 1.22446 0.94676 1.00788 0.95183 1.22212 0.91381 1.00588 0.93353 1.21056 1.02824 0.92957 0.99274 0.91448 0.91687 0.92464 0.77411 0.76833 0.85614 0.86166 0.91098 0.84494 0.86958 0.86921 0.89285 0.89559 0.94612 0.91449 0.91389 0.90102 0.90336 0.90669 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.33 37.15 0.35 -1.06 16 2 C 0.20 1.80 2.72 -69.08 -0.19 1.62 16 3 H 0.09 1.03 7.06 -51.93 -0.37 0.67 16 4 N -0.74 -7.13 5.04 -59.81 -0.30 -7.43 16 5 C 0.70 9.80 8.26 -86.92 -0.72 9.08 16 6 O -0.57 -10.45 13.72 5.28 0.07 -10.38 16 7 N -0.68 -9.05 5.35 -14.18 -0.08 -9.13 16 8 C 0.07 1.16 6.27 -83.62 -0.52 0.63 16 9 C -0.07 -1.34 8.65 -39.41 -0.34 -1.69 16 10 C -0.18 -3.68 9.98 -39.42 -0.39 -4.07 16 11 C 0.15 3.51 6.65 -39.09 -0.26 3.25 16 12 O -0.22 -5.80 8.58 -0.04 0.00 -5.80 16 13 C -0.39 -10.94 9.90 30.88 0.31 -10.63 16 14 H 0.11 2.99 5.53 -52.49 -0.29 2.70 16 15 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 16 N -0.88 -25.45 13.96 55.48 0.77 -24.68 16 17 Si 0.91 21.91 28.62 -169.99 -4.86 17.04 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.20 -4.37 9.13 -39.42 -0.36 -4.73 16 22 C -0.10 -1.70 9.95 -39.42 -0.39 -2.09 16 23 C -0.13 -0.89 4.25 -100.93 -0.43 -1.32 16 24 C -0.17 -1.17 9.01 -35.97 -0.32 -1.49 16 25 C 0.08 0.47 5.96 -5.28 -0.03 0.44 16 26 N -0.53 -3.36 5.27 -244.70 -1.29 -4.65 16 27 C 0.02 0.10 8.73 60.06 0.52 0.63 16 28 C 0.05 0.28 6.04 -3.78 -0.02 0.26 16 29 C -0.12 -0.66 4.64 -28.03 -0.13 -0.79 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.43 6.96 -51.93 -0.36 0.07 16 33 H 0.39 2.73 7.63 -40.82 -0.31 2.42 16 34 H 0.40 3.84 8.84 -40.82 -0.36 3.48 16 35 H 0.13 2.37 6.45 -52.49 -0.34 2.03 16 36 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.14 3.04 5.71 -52.49 -0.30 2.74 16 39 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 40 H 0.11 0.79 7.64 -52.49 -0.40 0.39 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.47 8.04 -51.93 -0.42 0.05 16 43 H 0.04 0.24 5.92 -51.93 -0.31 -0.07 16 44 H 0.07 0.35 8.11 -51.93 -0.42 -0.08 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 48 H 0.08 0.38 6.59 -51.93 -0.34 0.04 16 49 H 0.08 0.41 6.84 -51.93 -0.36 0.05 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -32.58 391.35 -9.91 -42.49 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.09 Total: 6.94 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -3.03 Total: -10.29 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.89 Total: -45.90 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.07 Total: -16.18 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.58 -9.91 -42.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320223276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.302 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds