Wall clock time and date at job start Wed Apr 1 2020 03:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46848 * 2 1 4 4 N 1.46505 * 109.47390 * 119.99766 * 2 1 3 5 5 C 1.34769 * 120.00246 * 275.00669 * 4 2 1 6 6 O 1.21593 * 119.99870 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00209 * 179.97438 * 5 4 2 8 8 C 1.40020 * 120.00091 * 174.74445 * 7 5 4 9 9 C 1.38918 * 120.00038 * 326.14282 * 8 7 5 10 10 C 1.38010 * 119.99508 * 179.78968 * 9 8 7 11 11 C 1.38903 * 120.00353 * 0.46788 * 10 9 8 12 12 O 1.35788 * 119.99906 * 179.76696 * 11 10 9 13 13 C 1.34819 * 116.99646 * 185.94337 * 12 11 10 14 14 H 1.08002 * 119.99903 * 5.40158 * 13 12 11 15 15 C 1.38627 * 119.99894 * 185.40841 * 13 12 11 16 16 N 1.31568 * 120.00443 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99820 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47146 * 90.00033 * 17 15 13 19 19 H 1.48498 * 109.46901 * 210.00047 * 17 15 13 20 20 H 1.48504 * 109.46953 * 330.00075 * 17 15 13 21 21 C 1.38908 * 120.00030 * 359.78560 * 11 10 9 22 22 C 1.38004 * 119.99811 * 359.97438 * 21 11 10 23 23 C 1.50697 * 109.47453 * 240.00322 * 2 1 3 24 24 C 1.29822 * 118.55644 * 114.99594 * 23 2 1 25 25 C 1.50137 * 123.28587 * 180.37184 * 24 23 2 26 26 N 1.46846 * 110.14432 * 343.03292 * 25 24 23 27 27 C 1.46896 * 110.99937 * 287.45347 * 26 25 24 28 28 C 1.46907 * 110.38346 * 50.98658 * 26 25 24 29 29 C 1.50303 * 118.55171 * 295.01936 * 23 2 1 30 30 H 1.08997 * 109.47282 * 299.99671 * 1 2 3 31 31 H 1.08994 * 109.47539 * 59.99966 * 1 2 3 32 32 H 1.09003 * 109.46848 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99149 * 95.00441 * 4 2 1 34 34 H 0.96999 * 119.99880 * 354.74671 * 7 5 4 35 35 H 1.07994 * 120.00351 * 0.02965 * 9 8 7 36 36 H 1.08001 * 120.00274 * 180.23388 * 10 9 8 37 37 H 0.96994 * 120.00510 * 179.97438 * 16 15 13 38 38 H 1.07999 * 119.99664 * 179.97438 * 21 11 10 39 39 H 1.08010 * 119.99674 * 179.97438 * 22 21 11 40 40 H 1.08001 * 118.35647 * 0.39718 * 24 23 2 41 41 H 1.09000 * 109.33453 * 103.19943 * 25 24 23 42 42 H 1.09002 * 109.34092 * 222.86374 * 25 24 23 43 43 H 1.09002 * 109.47042 * 56.04676 * 27 26 25 44 44 H 1.08999 * 109.47004 * 176.04694 * 27 26 25 45 45 H 1.08999 * 109.47398 * 296.04997 * 27 26 25 46 46 H 1.08998 * 109.69453 * 171.42410 * 28 26 25 47 47 H 1.09001 * 109.81435 * 50.87375 * 28 26 25 48 48 H 1.09002 * 109.43390 * 283.57569 * 29 23 2 49 49 H 1.08999 * 109.43208 * 43.42572 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8581 1.1616 2.4117 7 7 2.5958 -0.6537 3.4577 8 6 2.8342 0.0673 4.6341 9 6 3.2985 1.3748 4.5655 10 6 3.5293 2.0867 5.7250 11 6 3.3066 1.4928 6.9608 12 8 3.5383 2.1918 8.1016 13 6 3.4212 1.5207 9.2650 14 1 3.2401 0.4560 9.2583 15 6 3.5332 2.1973 10.4698 16 7 3.4185 1.5425 11.6052 17 14 3.8470 4.0388 10.4812 18 1 2.5500 4.7619 10.4804 19 1 4.6157 4.4023 11.6985 20 1 4.6247 4.4158 9.2735 21 6 2.8474 0.1836 7.0295 22 6 2.6119 -0.5267 5.8700 23 6 2.0324 -0.7103 -1.2304 24 6 2.6935 -0.0275 -2.1147 25 6 3.2347 -0.6251 -3.3813 26 7 3.2697 -2.0892 -3.2749 27 6 4.3402 -2.5258 -2.3687 28 6 1.9652 -2.6017 -2.8347 29 6 1.7454 -2.1781 -1.3801 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1525 34 1 2.7537 -1.6105 3.4349 35 1 3.4751 1.8353 3.6048 36 1 3.8866 3.1045 5.6717 37 1 3.4972 2.0158 12.4481 38 1 2.6747 -0.2783 7.9903 39 1 2.2552 -1.5448 5.9234 40 1 2.8631 1.0230 -1.9298 41 1 2.5960 -0.3390 -4.2169 42 1 4.2440 -0.2515 -3.5542 43 1 4.2089 -2.0514 -1.3961 44 1 4.2994 -3.6088 -2.2532 45 1 5.3068 -2.2409 -2.7842 46 1 1.9550 -3.6893 -2.9051 47 1 1.1750 -2.1867 -3.4604 48 1 2.4132 -2.7461 -0.7323 49 1 0.7117 -2.3762 -1.0970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320223276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:25 Heat of formation + Delta-G solvation = -20.828340 kcal Electronic energy + Delta-G solvation = -29433.845927 eV Core-core repulsion = 25361.407441 eV Total energy + Delta-G solvation = -4072.438486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.79752 -40.89980 -40.38930 -38.52752 -36.94986 -35.45543 -34.38160 -33.56521 -31.91175 -31.90006 -30.95490 -29.36645 -28.17930 -27.15356 -25.27765 -24.35732 -23.94299 -23.11945 -22.18685 -21.65188 -20.14186 -19.41189 -19.17972 -18.66692 -18.19581 -17.16102 -16.73925 -16.47724 -16.35026 -16.13957 -15.82796 -15.64795 -15.50468 -15.36797 -15.20055 -15.02801 -14.54744 -14.45031 -14.19334 -14.11351 -13.85258 -13.69693 -13.43417 -13.37456 -13.21988 -13.05399 -12.77139 -12.75284 -12.65975 -12.50647 -12.20185 -12.10299 -11.98393 -11.54932 -11.47140 -11.38891 -11.05224 -10.67969 -10.24176 -9.89306 -9.87533 -9.24031 -8.63585 -8.48589 -6.19165 0.48519 0.52144 0.96853 1.32061 1.35558 1.52476 1.70962 2.06650 2.29166 2.77760 3.05833 3.10432 3.11136 3.21901 3.59003 3.72967 4.02131 4.07173 4.10049 4.20394 4.26754 4.33163 4.36550 4.46642 4.51818 4.54492 4.62619 4.68221 4.70870 4.72755 4.81987 4.84994 4.93940 4.96996 5.05335 5.06890 5.10398 5.14535 5.21466 5.35421 5.40588 5.45989 5.49877 5.56137 5.75918 5.87202 5.89574 5.99208 6.10135 6.14051 6.20883 6.86239 6.99441 7.49864 7.61050 8.62696 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.001797 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.606181 B =15574.404295 C =15697.866891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.199 3.801 3 H 0.067 0.933 4 N -0.719 5.719 5 C 0.699 3.301 6 O -0.617 6.617 7 N -0.665 5.665 8 C 0.095 3.905 9 C -0.076 4.076 10 C -0.174 4.174 11 C 0.111 3.889 12 O -0.245 6.245 13 C -0.396 4.396 14 H 0.086 0.914 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.966 3.034 18 H -0.269 1.269 19 H -0.266 1.266 20 H -0.264 1.264 21 C -0.211 4.211 22 C -0.087 4.087 23 C -0.127 4.127 24 C -0.172 4.172 25 C 0.082 3.918 26 N -0.543 5.543 27 C 0.019 3.981 28 C 0.053 3.947 29 C -0.118 4.118 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.410 0.590 34 H 0.421 0.579 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.284 0.716 38 H 0.122 0.878 39 H 0.154 0.846 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 -11.511 -32.667 34.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.095 3.905 3 H 0.085 0.915 4 N -0.375 5.375 5 C 0.400 3.600 6 O -0.497 6.497 7 N -0.314 5.314 8 C 0.000 4.000 9 C -0.097 4.097 10 C -0.194 4.194 11 C 0.062 3.938 12 O -0.153 6.153 13 C -0.472 4.472 14 H 0.104 0.896 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.789 3.211 18 H -0.194 1.194 19 H -0.191 1.191 20 H -0.189 1.189 21 C -0.231 4.231 22 C -0.107 4.107 23 C -0.128 4.128 24 C -0.192 4.192 25 C -0.046 4.046 26 N -0.265 5.265 27 C -0.129 4.129 28 C -0.075 4.075 29 C -0.156 4.156 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.247 0.753 34 H 0.259 0.741 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.140 0.860 39 H 0.171 0.829 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.109 0.891 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.545 -10.447 -32.921 34.632 hybrid contribution 0.007 0.337 1.673 1.707 sum -2.538 -10.110 -31.247 32.940 Atomic orbital electron populations 1.22125 0.94303 1.02983 1.01927 1.19836 0.94310 0.95266 0.81119 0.91521 1.45012 1.70889 1.14232 1.07374 1.16094 0.77962 0.84904 0.81055 1.90934 1.57626 1.16310 1.84789 1.42168 1.68909 1.11924 1.08413 1.17150 1.04600 0.93043 0.85201 1.20755 0.97604 0.94006 0.97288 1.20283 1.08524 1.01364 0.89224 1.19580 0.95596 0.91909 0.86764 1.83545 1.80476 1.38713 1.12581 1.20717 1.50920 0.94113 0.81455 0.89624 1.25217 0.95998 1.04360 0.93202 1.69721 1.49873 1.38691 0.97901 0.85281 0.79159 0.78398 0.78290 1.19402 1.19107 1.18883 1.21137 1.07426 0.94984 0.99505 1.20759 0.99716 1.00943 0.89329 1.20868 0.99974 0.96728 0.95263 1.22967 0.98015 1.00616 0.97636 1.21150 1.02010 0.86800 0.94651 1.62581 1.05071 1.09519 1.49323 1.22442 0.94575 1.01254 0.94672 1.22259 0.90883 1.01189 0.93176 1.21060 1.03473 0.91502 0.99600 0.94283 0.90608 0.90691 0.75334 0.74100 0.85039 0.85565 0.90631 0.86004 0.82882 0.87622 0.88607 0.89278 0.95306 0.90592 0.91525 0.89083 0.90238 0.89928 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.33 71.98 0.67 -1.75 16 2 C 0.20 3.25 2.72 44.24 0.12 3.37 16 3 H 0.07 1.46 7.06 -2.39 -0.02 1.45 16 4 N -0.72 -11.87 5.04 -461.41 -2.33 -14.20 16 5 C 0.70 17.89 8.26 179.06 1.48 19.37 16 6 O -0.62 -21.72 13.72 -4.01 -0.06 -21.77 16 7 N -0.66 -15.58 5.35 -317.05 -1.70 -17.27 16 8 C 0.09 3.07 6.27 38.16 0.24 3.31 16 9 C -0.08 -2.83 8.65 22.38 0.19 -2.63 16 10 C -0.17 -7.32 9.98 22.37 0.22 -7.10 16 11 C 0.11 5.31 6.65 22.59 0.15 5.46 16 12 O -0.25 -13.55 8.58 -23.05 -0.20 -13.75 16 13 C -0.40 -23.27 9.90 67.91 0.67 -22.60 16 14 H 0.09 5.18 5.53 -2.91 -0.02 5.17 16 15 C 0.01 0.62 5.49 84.83 0.47 1.09 16 16 N -0.92 -54.88 13.96 21.61 0.30 -54.58 16 17 Si 0.97 46.14 28.62 68.60 1.96 48.10 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 21 C -0.21 -9.08 9.13 22.37 0.20 -8.88 16 22 C -0.09 -2.91 9.95 22.37 0.22 -2.69 16 23 C -0.13 -1.46 4.25 -15.40 -0.07 -1.52 16 24 C -0.17 -2.04 9.01 26.68 0.24 -1.80 16 25 C 0.08 0.80 5.96 85.39 0.51 1.31 16 26 N -0.54 -5.49 5.27 -928.10 -4.89 -10.37 16 27 C 0.02 0.17 8.73 127.69 1.11 1.29 16 28 C 0.05 0.40 6.04 86.33 0.52 0.92 16 29 C -0.12 -0.87 4.64 29.75 0.14 -0.73 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 0.90 6.96 -2.39 -0.02 0.88 16 33 H 0.41 4.12 7.63 -92.71 -0.71 3.41 16 34 H 0.42 6.23 8.84 -92.71 -0.82 5.41 16 35 H 0.13 4.80 6.45 -2.91 -0.02 4.78 16 36 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 37 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.12 5.62 5.71 -2.91 -0.02 5.60 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.11 1.39 7.64 -2.91 -0.02 1.37 16 41 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.82 8.04 -2.39 -0.02 0.80 16 43 H 0.03 0.30 5.92 -2.39 -0.01 0.29 16 44 H 0.08 0.57 8.11 -2.39 -0.02 0.55 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 48 H 0.08 0.51 6.59 -2.39 -0.02 0.50 16 49 H 0.09 0.55 6.84 -2.39 -0.02 0.53 16 Total: -1.00 -73.28 391.35 -0.33 -73.62 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.53 Total: 23.80 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 7.10 Total: -13.58 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -8.61 Total: -96.42 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.25 Total: -35.52 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.96 Total: 48.10 kcal Total: -73.28 -0.33 -73.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320223276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.788 kcal (2) G-P(sol) polarization free energy of solvation -73.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds