Wall clock time and date at job start Wed Apr 1 2020 03:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46988 * 2 1 4 4 N 1.46502 * 109.47313 * 240.00209 * 2 1 3 5 5 C 1.34781 * 119.99688 * 84.99698 * 4 2 1 6 6 O 1.21585 * 120.00226 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99858 * 180.02562 * 5 4 2 8 8 C 1.40022 * 120.00176 * 175.49455 * 7 5 4 9 9 C 1.38908 * 120.00352 * 215.12379 * 8 7 5 10 10 C 1.38003 * 120.00179 * 180.02562 * 9 8 7 11 11 C 1.38899 * 119.99996 * 0.02562 * 10 9 8 12 12 O 1.35783 * 119.99801 * 179.97438 * 11 10 9 13 13 C 1.34820 * 117.00252 * 5.33726 * 12 11 10 14 14 H 1.08001 * 119.99593 * 354.96888 * 13 12 11 15 15 C 1.38634 * 120.00020 * 174.96470 * 13 12 11 16 16 N 1.31572 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99661 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47012 * 90.00521 * 17 15 13 19 19 H 1.48498 * 109.46951 * 210.00132 * 17 15 13 20 20 H 1.48501 * 109.47460 * 330.00194 * 17 15 13 21 21 C 1.38902 * 120.00661 * 0.26478 * 11 10 9 22 22 C 1.38008 * 119.99473 * 359.45951 * 21 11 10 23 23 C 1.50696 * 109.47414 * 120.00029 * 2 1 3 24 24 C 1.29825 * 118.55811 * 244.99613 * 23 2 1 25 25 C 1.50144 * 123.28739 * 180.37074 * 24 23 2 26 26 N 1.46840 * 110.27266 * 342.95768 * 25 24 23 27 27 C 1.46904 * 110.99862 * 174.31359 * 26 25 24 28 28 C 1.47236 * 110.21129 * 50.92341 * 26 25 24 29 29 C 1.50309 * 118.55243 * 64.73934 * 23 2 1 30 30 H 1.09000 * 109.47025 * 299.99899 * 1 2 3 31 31 H 1.08992 * 109.47335 * 59.99819 * 1 2 3 32 32 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 33 33 H 0.96993 * 120.00341 * 264.99889 * 4 2 1 34 34 H 0.96997 * 119.99675 * 355.48546 * 7 5 4 35 35 H 1.08006 * 119.99682 * 0.04275 * 9 8 7 36 36 H 1.08004 * 120.00410 * 179.97438 * 10 9 8 37 37 H 0.97004 * 119.99768 * 179.97438 * 16 15 13 38 38 H 1.07993 * 120.00563 * 179.70790 * 21 11 10 39 39 H 1.08001 * 120.00490 * 180.27632 * 22 21 11 40 40 H 1.08001 * 118.35434 * 0.39902 * 24 23 2 41 41 H 1.09000 * 109.33344 * 103.20167 * 25 24 23 42 42 H 1.08995 * 109.33481 * 222.87365 * 25 24 23 43 43 H 1.08998 * 109.46993 * 63.95483 * 27 26 25 44 44 H 1.09004 * 109.47017 * 183.94950 * 27 26 25 45 45 H 1.08993 * 109.46981 * 303.95275 * 27 26 25 46 46 H 1.09000 * 109.63178 * 50.88741 * 28 26 25 47 47 H 1.08995 * 109.64220 * 171.29349 * 28 26 25 48 48 H 1.09006 * 109.42741 * 283.57977 * 29 23 2 49 49 H 1.09002 * 109.43206 * 43.42547 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1617 -2.4116 7 7 2.5958 -0.6535 -3.4578 8 6 2.6403 0.0189 -4.6852 9 6 2.3790 -0.6685 -5.8637 10 6 2.4234 -0.0059 -7.0734 11 6 2.7300 1.3483 -7.1127 12 8 2.7741 2.0001 -8.3030 13 6 2.4033 1.3038 -9.3963 14 1 2.1676 0.2531 -9.3130 15 6 2.3243 1.9366 -10.6273 16 7 2.6119 3.2165 -10.7287 17 14 1.8112 0.9716 -12.1421 18 1 0.3353 1.0357 -12.2933 19 1 2.4577 1.5566 -13.3442 20 1 2.2325 -0.4446 -11.9932 21 6 2.9972 2.0345 -5.9349 22 6 2.9472 1.3732 -4.7246 23 6 2.0323 -0.7104 1.2304 24 6 2.6937 -0.0276 2.1147 25 6 3.2488 -0.6289 3.3735 26 7 2.6094 -1.9227 3.6444 27 6 3.2339 -2.5877 4.7959 28 6 2.6648 -2.7780 2.4472 29 6 1.7407 -2.1770 1.3826 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 2.8881 -1.5766 -3.3996 35 1 2.1408 -1.7215 -5.8331 36 1 2.2207 -0.5404 -7.9897 37 1 2.5570 3.6591 -11.5901 38 1 3.2401 3.0863 -5.9659 39 1 3.1506 1.9076 -3.8084 40 1 2.8520 1.0257 1.9361 41 1 4.3232 -0.7737 3.2610 42 1 3.0611 0.0457 4.2089 43 1 3.0719 -1.9896 5.6926 44 1 2.7889 -3.5735 4.9314 45 1 4.3040 -2.6934 4.6179 46 1 3.6872 -2.8158 2.0712 47 1 2.3301 -3.7841 2.6999 48 1 0.7012 -2.3108 1.6824 49 1 1.9106 -2.6812 0.4313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320223277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:31 Heat of formation + Delta-G solvation = 0.459369 kcal Electronic energy + Delta-G solvation = -29072.998660 eV Core-core repulsion = 25001.483278 eV Total energy + Delta-G solvation = -4071.515382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.52202 -39.59565 -38.70698 -36.98152 -35.94386 -33.96658 -33.20120 -32.13177 -31.35921 -30.34153 -30.15162 -27.57714 -27.16782 -25.30696 -24.46162 -23.54013 -22.45368 -22.07191 -21.09722 -20.42498 -18.79170 -17.94977 -17.73444 -17.41160 -16.76430 -16.03015 -15.79488 -15.42900 -15.29462 -15.08390 -14.52654 -14.51376 -14.20186 -14.04183 -13.82234 -13.53825 -13.49434 -13.27132 -13.04539 -12.97421 -12.78410 -12.58562 -12.40636 -12.20766 -12.15963 -11.81716 -11.68987 -11.52544 -11.45054 -11.37329 -10.99712 -10.71811 -10.70589 -10.43907 -9.90810 -9.59170 -9.35905 -9.19986 -9.12393 -8.84509 -8.65396 -8.14792 -6.86482 -6.40491 -3.98594 1.70170 2.21565 2.30291 2.82304 3.14471 3.15831 3.20503 3.38113 3.43155 4.00068 4.14844 4.27705 4.32531 4.63191 4.64955 4.73964 4.82076 4.88261 4.98464 5.06836 5.13169 5.13465 5.17543 5.21490 5.34589 5.38076 5.38796 5.41502 5.55748 5.59794 5.62252 5.75152 5.84751 5.94284 6.10076 6.19082 6.26002 6.31240 6.37297 6.47670 6.55130 6.64455 6.74720 6.89676 6.97289 7.17305 7.27588 7.31286 7.48085 7.85686 8.03936 8.09561 8.72453 9.04947 9.76313 10.77630 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.034027 B = 0.001661 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.684850 B =16855.881783 C =17101.197646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.198 3.802 3 H 0.092 0.908 4 N -0.742 5.742 5 C 0.700 3.300 6 O -0.575 6.575 7 N -0.676 5.676 8 C 0.054 3.946 9 C -0.093 4.093 10 C -0.220 4.220 11 C 0.146 3.854 12 O -0.178 6.178 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.038 3.962 16 N -0.863 5.863 17 Si 0.941 3.059 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.178 4.178 22 C -0.067 4.067 23 C -0.122 4.122 24 C -0.143 4.143 25 C 0.083 3.917 26 N -0.539 5.539 27 C 0.022 3.978 28 C 0.050 3.950 29 C -0.076 4.076 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.392 0.608 34 H 0.397 0.603 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.269 0.731 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.026 0.974 46 H 0.038 0.962 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 -14.197 27.931 31.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.093 3.907 3 H 0.110 0.890 4 N -0.399 5.399 5 C 0.401 3.599 6 O -0.451 6.451 7 N -0.323 5.323 8 C -0.039 4.039 9 C -0.113 4.113 10 C -0.240 4.240 11 C 0.092 3.908 12 O -0.082 6.082 13 C -0.468 4.468 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.193 1.193 21 C -0.198 4.198 22 C -0.087 4.087 23 C -0.123 4.123 24 C -0.162 4.162 25 C -0.044 4.044 26 N -0.263 5.263 27 C -0.126 4.126 28 C -0.078 4.078 29 C -0.114 4.114 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.226 0.774 34 H 0.230 0.770 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.134 0.866 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.097 0.903 48 H 0.103 0.897 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.285 -12.601 27.766 30.493 hybrid contribution 0.757 -1.625 -0.892 2.002 sum 0.473 -14.226 26.874 30.411 Atomic orbital electron populations 1.22167 0.94722 1.02193 1.02754 1.19806 0.94066 0.96184 0.80653 0.88957 1.45233 1.72331 1.13444 1.08853 1.15961 0.78382 0.85347 0.80215 1.90925 1.56404 1.13942 1.83873 1.42306 1.67520 1.15714 1.06731 1.17039 1.11006 0.92867 0.82943 1.20449 1.00875 0.98731 0.91269 1.20947 1.10450 0.94849 0.97711 1.19414 0.93265 0.90828 0.87318 1.83994 1.73862 1.38849 1.11479 1.21306 1.46990 0.94287 0.84175 0.89126 1.25276 0.96890 0.96028 0.98373 1.70051 1.44918 1.09188 1.25627 0.85720 0.78839 0.79062 0.79831 1.19930 1.20313 1.19262 1.20155 1.09815 1.00086 0.89769 1.20776 0.97625 0.93003 0.97313 1.20990 0.99450 0.96026 0.95793 1.22124 0.99001 0.99980 0.95127 1.20991 0.95940 0.90905 0.96554 1.62439 1.55015 1.03783 1.05064 1.22405 0.96816 0.99659 0.93697 1.22259 0.98432 0.96587 0.90477 1.20467 1.00733 0.92124 0.98049 0.91642 0.91517 0.92481 0.77404 0.76970 0.87292 0.85166 0.92082 0.86191 0.85174 0.86585 0.93461 0.89507 0.91138 0.91198 0.95526 0.94321 0.90292 0.89658 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.35 37.16 0.35 -1.19 16 2 C 0.20 1.92 2.72 -69.09 -0.19 1.73 16 3 H 0.09 1.08 7.06 -51.93 -0.37 0.71 16 4 N -0.74 -7.52 5.05 -59.81 -0.30 -7.83 16 5 C 0.70 10.21 8.37 -86.91 -0.73 9.48 16 6 O -0.57 -10.81 13.44 5.29 0.07 -10.74 16 7 N -0.68 -9.42 5.34 -14.18 -0.08 -9.50 16 8 C 0.05 0.99 6.30 -83.62 -0.53 0.46 16 9 C -0.09 -1.69 9.96 -39.42 -0.39 -2.08 16 10 C -0.22 -4.78 9.16 -39.42 -0.36 -5.14 16 11 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 12 O -0.18 -5.17 9.76 -0.03 0.00 -5.17 16 13 C -0.39 -11.02 9.48 30.88 0.29 -10.73 16 14 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 16 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 17 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 C -0.18 -4.02 9.99 -39.42 -0.39 -4.42 16 22 C -0.07 -1.36 8.69 -39.41 -0.34 -1.70 16 23 C -0.12 -0.94 4.91 -100.93 -0.50 -1.44 16 24 C -0.14 -1.09 9.53 -35.96 -0.34 -1.44 16 25 C 0.08 0.55 5.66 -5.28 -0.03 0.52 16 26 N -0.54 -3.63 4.97 -244.31 -1.21 -4.84 16 27 C 0.02 0.11 9.62 60.07 0.58 0.69 16 28 C 0.05 0.30 5.60 -3.51 -0.02 0.28 16 29 C -0.08 -0.48 5.50 -27.94 -0.15 -0.63 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.48 7.73 -51.93 -0.40 0.08 16 33 H 0.39 2.86 7.06 -40.82 -0.29 2.57 16 34 H 0.40 4.00 8.84 -40.82 -0.36 3.64 16 35 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.13 2.80 5.63 -52.48 -0.30 2.50 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 39 H 0.13 2.62 6.23 -52.49 -0.33 2.29 16 40 H 0.12 0.86 7.64 -52.49 -0.40 0.46 16 41 H 0.05 0.30 8.08 -51.93 -0.42 -0.11 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.30 7.98 -51.93 -0.41 -0.12 16 45 H 0.03 0.13 8.09 -51.93 -0.42 -0.29 16 46 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 47 H 0.08 0.39 7.95 -51.93 -0.41 -0.02 16 48 H 0.09 0.56 8.05 -51.93 -0.42 0.14 16 49 H 0.07 0.36 6.60 -51.93 -0.34 0.02 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -34.08 397.30 -10.14 -44.22 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.23 Total: 8.36 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -3.11 Total: -11.28 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.83 Total: -46.99 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.07 Total: -15.92 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.08 -10.14 -44.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320223277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.680 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds