Wall clock time and date at job start Wed Apr 1 2020 03:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46988 * 2 1 4 4 N 1.46502 * 109.47313 * 240.00209 * 2 1 3 5 5 C 1.34781 * 119.99688 * 84.99698 * 4 2 1 6 6 O 1.21585 * 120.00226 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99858 * 180.02562 * 5 4 2 8 8 C 1.40022 * 120.00176 * 175.49455 * 7 5 4 9 9 C 1.38908 * 120.00352 * 215.12379 * 8 7 5 10 10 C 1.38003 * 120.00179 * 180.02562 * 9 8 7 11 11 C 1.38899 * 119.99996 * 0.02562 * 10 9 8 12 12 O 1.35783 * 119.99801 * 179.97438 * 11 10 9 13 13 C 1.34820 * 117.00252 * 5.33726 * 12 11 10 14 14 H 1.08001 * 119.99593 * 354.96888 * 13 12 11 15 15 C 1.38634 * 120.00020 * 174.96470 * 13 12 11 16 16 N 1.31572 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99661 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47012 * 90.00521 * 17 15 13 19 19 H 1.48498 * 109.46951 * 210.00132 * 17 15 13 20 20 H 1.48501 * 109.47460 * 330.00194 * 17 15 13 21 21 C 1.38902 * 120.00661 * 0.26478 * 11 10 9 22 22 C 1.38008 * 119.99473 * 359.45951 * 21 11 10 23 23 C 1.50696 * 109.47414 * 120.00029 * 2 1 3 24 24 C 1.29825 * 118.55811 * 244.99613 * 23 2 1 25 25 C 1.50144 * 123.28739 * 180.37074 * 24 23 2 26 26 N 1.46840 * 110.27266 * 342.95768 * 25 24 23 27 27 C 1.46904 * 110.99862 * 174.31359 * 26 25 24 28 28 C 1.47236 * 110.21129 * 50.92341 * 26 25 24 29 29 C 1.50309 * 118.55243 * 64.73934 * 23 2 1 30 30 H 1.09000 * 109.47025 * 299.99899 * 1 2 3 31 31 H 1.08992 * 109.47335 * 59.99819 * 1 2 3 32 32 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 33 33 H 0.96993 * 120.00341 * 264.99889 * 4 2 1 34 34 H 0.96997 * 119.99675 * 355.48546 * 7 5 4 35 35 H 1.08006 * 119.99682 * 0.04275 * 9 8 7 36 36 H 1.08004 * 120.00410 * 179.97438 * 10 9 8 37 37 H 0.97004 * 119.99768 * 179.97438 * 16 15 13 38 38 H 1.07993 * 120.00563 * 179.70790 * 21 11 10 39 39 H 1.08001 * 120.00490 * 180.27632 * 22 21 11 40 40 H 1.08001 * 118.35434 * 0.39902 * 24 23 2 41 41 H 1.09000 * 109.33344 * 103.20167 * 25 24 23 42 42 H 1.08995 * 109.33481 * 222.87365 * 25 24 23 43 43 H 1.08998 * 109.46993 * 63.95483 * 27 26 25 44 44 H 1.09004 * 109.47017 * 183.94950 * 27 26 25 45 45 H 1.08993 * 109.46981 * 303.95275 * 27 26 25 46 46 H 1.09000 * 109.63178 * 50.88741 * 28 26 25 47 47 H 1.08995 * 109.64220 * 171.29349 * 28 26 25 48 48 H 1.09006 * 109.42741 * 283.57977 * 29 23 2 49 49 H 1.09002 * 109.43206 * 43.42547 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1617 -2.4116 7 7 2.5958 -0.6535 -3.4578 8 6 2.6403 0.0189 -4.6852 9 6 2.3790 -0.6685 -5.8637 10 6 2.4234 -0.0059 -7.0734 11 6 2.7300 1.3483 -7.1127 12 8 2.7741 2.0001 -8.3030 13 6 2.4033 1.3038 -9.3963 14 1 2.1676 0.2531 -9.3130 15 6 2.3243 1.9366 -10.6273 16 7 2.6119 3.2165 -10.7287 17 14 1.8112 0.9716 -12.1421 18 1 0.3353 1.0357 -12.2933 19 1 2.4577 1.5566 -13.3442 20 1 2.2325 -0.4446 -11.9932 21 6 2.9972 2.0345 -5.9349 22 6 2.9472 1.3732 -4.7246 23 6 2.0323 -0.7104 1.2304 24 6 2.6937 -0.0276 2.1147 25 6 3.2488 -0.6289 3.3735 26 7 2.6094 -1.9227 3.6444 27 6 3.2339 -2.5877 4.7959 28 6 2.6648 -2.7780 2.4472 29 6 1.7407 -2.1770 1.3826 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 2.8881 -1.5766 -3.3996 35 1 2.1408 -1.7215 -5.8331 36 1 2.2207 -0.5404 -7.9897 37 1 2.5570 3.6591 -11.5901 38 1 3.2401 3.0863 -5.9659 39 1 3.1506 1.9076 -3.8084 40 1 2.8520 1.0257 1.9361 41 1 4.3232 -0.7737 3.2610 42 1 3.0611 0.0457 4.2089 43 1 3.0719 -1.9896 5.6926 44 1 2.7889 -3.5735 4.9314 45 1 4.3040 -2.6934 4.6179 46 1 3.6872 -2.8158 2.0712 47 1 2.3301 -3.7841 2.6999 48 1 0.7012 -2.3108 1.6824 49 1 1.9106 -2.6812 0.4313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320223277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:30 Heat of formation + Delta-G solvation = -23.549444 kcal Electronic energy + Delta-G solvation = -29074.039760 eV Core-core repulsion = 25001.483278 eV Total energy + Delta-G solvation = -4072.556482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.71150 -40.64186 -40.04974 -38.40107 -37.02856 -35.41005 -34.25594 -33.87920 -31.85532 -31.83358 -31.23927 -29.14912 -27.68883 -27.27649 -24.98277 -24.40457 -23.85290 -23.22919 -22.32053 -21.63225 -20.14725 -19.45327 -18.98551 -18.52065 -18.15385 -17.00025 -16.57189 -16.39772 -16.32855 -16.18889 -15.98189 -15.75247 -15.49755 -15.34586 -15.06732 -14.65912 -14.56779 -14.49498 -14.21843 -13.97227 -13.57633 -13.56501 -13.44517 -13.29827 -13.26137 -13.08288 -12.77494 -12.67563 -12.59485 -12.46895 -12.38903 -12.10035 -11.86536 -11.35211 -11.33321 -11.30097 -10.95467 -10.53182 -10.16405 -9.86824 -9.81921 -9.31042 -8.56043 -8.43255 -6.10781 0.54924 0.60619 1.05020 1.37831 1.47217 1.55683 1.74743 2.12821 2.21017 2.86213 3.00266 3.18303 3.26436 3.51255 3.55169 3.77945 4.07562 4.16581 4.17363 4.20543 4.29912 4.35289 4.43773 4.48492 4.52376 4.56953 4.61982 4.67018 4.70642 4.78313 4.79598 4.89046 4.92176 4.98847 5.05043 5.08992 5.14262 5.22367 5.25088 5.33052 5.42528 5.47095 5.48245 5.61362 5.71411 5.92005 6.01902 6.05740 6.06449 6.16088 6.22115 7.00806 7.06235 7.56049 7.82343 8.80037 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.034027 B = 0.001661 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.684850 B =16855.881783 C =17101.197646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.199 3.801 3 H 0.068 0.932 4 N -0.719 5.719 5 C 0.698 3.302 6 O -0.619 6.619 7 N -0.662 5.662 8 C 0.083 3.917 9 C -0.080 4.080 10 C -0.219 4.219 11 C 0.106 3.894 12 O -0.233 6.233 13 C -0.413 4.413 14 H 0.107 0.893 15 C -0.026 4.026 16 N -0.923 5.923 17 Si 1.021 2.979 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.248 1.248 21 C -0.190 4.190 22 C -0.074 4.074 23 C -0.121 4.121 24 C -0.147 4.147 25 C 0.085 3.915 26 N -0.552 5.552 27 C 0.022 3.978 28 C 0.050 3.950 29 C -0.075 4.075 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.411 0.589 34 H 0.422 0.578 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.271 0.729 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.028 0.972 46 H 0.036 0.964 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 -18.441 29.867 35.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.094 3.906 3 H 0.087 0.913 4 N -0.375 5.375 5 C 0.399 3.601 6 O -0.499 6.499 7 N -0.312 5.312 8 C -0.012 4.012 9 C -0.100 4.100 10 C -0.239 4.239 11 C 0.055 3.945 12 O -0.140 6.140 13 C -0.489 4.489 14 H 0.124 0.876 15 C -0.223 4.223 16 N -0.561 5.561 17 Si 0.840 3.160 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.172 1.172 21 C -0.210 4.210 22 C -0.094 4.094 23 C -0.122 4.122 24 C -0.167 4.167 25 C -0.043 4.043 26 N -0.277 5.277 27 C -0.125 4.125 28 C -0.078 4.078 29 C -0.112 4.112 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.260 0.740 35 H 0.177 0.823 36 H 0.151 0.849 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.110 0.890 48 H 0.104 0.896 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.796 -16.946 29.808 34.297 hybrid contribution 0.935 -0.374 -1.058 1.460 sum 0.139 -17.320 28.750 33.564 Atomic orbital electron populations 1.22104 0.94410 1.02968 1.01773 1.19800 0.94241 0.95355 0.81179 0.91339 1.45028 1.70867 1.14173 1.07471 1.16127 0.78052 0.84864 0.81085 1.90917 1.58135 1.16189 1.84633 1.42086 1.67375 1.16633 1.05104 1.17125 1.07214 0.92055 0.84791 1.20805 0.98891 1.00841 0.89477 1.21111 1.09743 0.93630 0.99403 1.19858 0.95378 0.92508 0.86731 1.83961 1.76570 1.40596 1.12855 1.21883 1.47173 0.95198 0.84606 0.87575 1.26633 0.96642 0.97162 1.01850 1.70213 1.47743 1.11536 1.26643 0.84555 0.78587 0.78123 0.74738 1.19022 1.19855 1.17181 1.20253 1.10342 1.00046 0.90365 1.20857 0.97940 0.94378 0.96220 1.20906 0.99690 0.96929 0.94683 1.22274 0.98761 0.99984 0.95644 1.20981 0.95941 0.91254 0.96099 1.62465 1.55412 1.03978 1.05811 1.22437 0.96897 0.99999 0.93213 1.22299 0.98265 0.97068 0.90141 1.20509 1.00852 0.90804 0.99034 0.90776 0.94363 0.90749 0.75166 0.74025 0.82315 0.84949 0.91968 0.87218 0.85075 0.87041 0.93247 0.88987 0.90836 0.90372 0.95344 0.94521 0.88993 0.89569 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.35 71.98 0.67 -2.04 16 2 C 0.20 3.54 2.72 44.24 0.12 3.66 16 3 H 0.07 1.59 7.06 -2.38 -0.02 1.57 16 4 N -0.72 -12.58 5.05 -461.40 -2.33 -14.91 16 5 C 0.70 18.77 8.37 179.05 1.50 20.27 16 6 O -0.62 -22.91 13.44 -3.98 -0.05 -22.96 16 7 N -0.66 -16.12 5.34 -317.04 -1.69 -17.82 16 8 C 0.08 2.79 6.30 38.16 0.24 3.03 16 9 C -0.08 -2.65 9.96 22.37 0.22 -2.43 16 10 C -0.22 -9.37 9.16 22.37 0.20 -9.17 16 11 C 0.11 5.43 6.65 22.59 0.15 5.58 16 12 O -0.23 -14.33 9.76 -23.01 -0.22 -14.55 16 13 C -0.41 -24.09 9.48 67.91 0.64 -23.44 16 14 H 0.11 5.56 5.20 -2.91 -0.02 5.54 16 15 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 16 N -0.92 -57.54 13.67 21.61 0.30 -57.24 16 17 Si 1.02 42.85 29.55 68.60 2.03 44.88 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 21 C -0.19 -8.95 9.99 22.37 0.22 -8.72 16 22 C -0.07 -2.98 8.69 22.38 0.19 -2.79 16 23 C -0.12 -1.61 4.91 -15.40 -0.08 -1.69 16 24 C -0.15 -2.03 9.53 26.68 0.25 -1.77 16 25 C 0.08 0.97 5.66 85.39 0.48 1.45 16 26 N -0.55 -6.11 4.97 -926.87 -4.61 -10.71 16 27 C 0.02 0.17 9.62 127.69 1.23 1.40 16 28 C 0.05 0.45 5.60 86.32 0.48 0.93 16 29 C -0.07 -0.69 5.50 29.81 0.16 -0.52 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.04 7.73 -2.39 -0.02 1.03 16 33 H 0.41 4.27 7.06 -92.71 -0.65 3.62 16 34 H 0.42 6.35 8.84 -92.71 -0.82 5.53 16 35 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.13 5.56 5.63 -2.91 -0.02 5.54 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.11 5.21 8.06 -2.91 -0.02 5.18 16 39 H 0.13 5.32 6.23 -2.91 -0.02 5.30 16 40 H 0.11 1.59 7.64 -2.91 -0.02 1.57 16 41 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 0.47 7.98 -2.39 -0.02 0.45 16 45 H 0.03 0.21 8.09 -2.39 -0.02 0.19 16 46 H 0.04 0.35 8.08 -2.39 -0.02 0.33 16 47 H 0.09 0.59 7.95 -2.39 -0.02 0.57 16 48 H 0.09 0.83 8.05 -2.38 -0.02 0.81 16 49 H 0.09 0.51 6.60 -2.39 -0.02 0.50 16 Total: -1.00 -79.65 397.30 0.10 -79.55 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.49 Total: 31.01 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 7.18 Total: -17.25 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -8.34 Total: -100.68 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.28 Total: -37.51 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -79.65 0.10 -79.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320223277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.997 kcal (2) G-P(sol) polarization free energy of solvation -79.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds