Wall clock time and date at job start Wed Apr 1 2020 04:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46906 * 2 1 4 4 C 1.52996 * 109.47171 * 240.00422 * 2 1 3 5 5 C 1.50706 * 109.47367 * 174.99639 * 4 2 1 6 6 C 1.38649 * 120.78825 * 269.71873 * 5 4 2 7 7 C 1.38200 * 119.15819 * 179.79664 * 6 5 4 8 8 N 1.31874 * 120.76711 * 0.48829 * 7 6 5 9 9 C 1.31868 * 121.72164 * 359.73716 * 8 7 6 10 10 C 1.38201 * 120.76995 * 0.02829 * 9 8 7 11 11 N 1.46497 * 109.47447 * 120.00062 * 2 1 3 12 12 C 1.34776 * 119.99865 * 274.99997 * 11 2 1 13 13 O 1.21347 * 120.00343 * 0.02562 * 12 11 2 14 14 C 1.49453 * 120.00093 * 180.02562 * 12 11 2 15 15 O 1.21356 * 119.99553 * 354.37049 * 14 12 11 16 16 N 1.34779 * 120.00400 * 174.37080 * 14 12 11 17 17 C 1.46927 * 120.63054 * 171.53943 * 16 14 12 18 18 C 1.53195 * 108.89085 * 126.46258 * 17 16 14 19 19 C 1.53044 * 109.31137 * 54.56242 * 18 17 16 20 20 C 1.50693 * 109.45744 * 178.62720 * 19 18 17 21 21 H 1.07997 * 120.00308 * 5.05067 * 20 19 18 22 22 C 1.37882 * 119.99961 * 185.05086 * 20 19 18 23 23 N 1.31509 * 119.99822 * 8.09728 * 22 20 19 24 24 Si 1.86797 * 119.99930 * 188.09915 * 22 20 19 25 25 H 1.48501 * 109.47335 * 94.98946 * 24 22 20 26 26 H 1.48504 * 109.47303 * 214.98623 * 24 22 20 27 27 H 1.48503 * 109.47400 * 334.98613 * 24 22 20 28 28 C 1.53036 * 109.53957 * 298.63565 * 19 18 17 29 29 C 1.46959 * 120.65209 * 351.36065 * 16 14 12 30 30 H 1.08999 * 109.47026 * 299.99377 * 1 2 3 31 31 H 1.08991 * 109.47610 * 59.99873 * 1 2 3 32 32 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46970 * 294.99191 * 4 2 1 34 34 H 1.09002 * 109.47436 * 54.99736 * 4 2 1 35 35 H 1.07995 * 120.42067 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.61711 * 180.20583 * 7 6 5 37 37 H 1.08003 * 119.61225 * 179.97438 * 9 8 7 38 38 H 1.07994 * 120.42028 * 179.97438 * 10 9 8 39 39 H 0.97003 * 120.00337 * 95.00263 * 11 2 1 40 40 H 1.08998 * 109.58344 * 6.60490 * 17 16 14 41 41 H 1.09000 * 109.58489 * 246.31961 * 17 16 14 42 42 H 1.08999 * 109.49827 * 174.51638 * 18 17 16 43 43 H 1.08999 * 109.49486 * 294.57920 * 18 17 16 44 44 H 1.09004 * 109.45697 * 58.65837 * 19 18 17 45 45 H 0.97001 * 119.99998 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.50103 * 181.31588 * 28 19 18 47 47 H 1.09007 * 109.49742 * 301.41185 * 28 19 18 48 48 H 1.08995 * 109.47150 * 113.74869 * 29 16 14 49 49 H 1.09006 * 109.70954 * 353.45983 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 6 4.1513 0.4426 -1.9709 7 6 5.5313 0.5091 -2.0048 8 7 6.2659 -0.4225 -1.4292 9 6 5.7207 -1.4443 -0.7987 10 6 4.3471 -1.5750 -0.7195 11 7 2.0184 -0.6906 1.1961 12 6 2.1471 -0.0182 2.3571 13 8 1.8581 1.1590 2.4117 14 6 2.6459 -0.7226 3.5772 15 8 2.8378 -1.9206 3.5503 16 7 2.8827 -0.0273 4.7073 17 6 3.1939 -0.7235 5.9632 18 6 4.5023 -0.1632 6.5297 19 6 4.3851 1.3566 6.6660 20 6 5.6582 1.9075 7.2547 21 1 6.4992 1.2533 7.4305 22 6 5.7493 3.2470 7.5688 23 7 4.6810 4.0113 7.5059 24 14 7.3903 3.9760 8.0837 25 1 8.0608 4.5714 6.9000 26 1 7.1652 5.0288 9.1066 27 1 8.2496 2.9075 8.6540 28 6 4.1507 1.9776 5.2871 29 6 2.8383 1.4416 4.7064 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6053 -0.2616 -2.1370 35 1 3.5551 1.2060 -2.4485 36 1 6.0137 1.3313 -2.5125 37 1 6.3550 -2.1882 -0.3395 38 1 3.9066 -2.4143 -0.2020 39 1 2.2491 -1.6318 1.1526 40 1 3.3061 -1.7906 5.7713 41 1 2.3876 -0.5637 6.6790 42 1 4.6925 -0.6027 7.5089 43 1 5.3240 -0.4062 5.8561 44 1 3.5478 1.5990 7.3205 45 1 4.7451 4.9537 7.7266 46 1 4.0906 3.0619 5.3818 47 1 4.9757 1.7150 4.6248 48 1 2.0026 1.7802 5.3187 49 1 2.7148 1.8051 3.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323102970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:13 Heat of formation + Delta-G solvation = -33.790684 kcal Electronic energy + Delta-G solvation = -30778.240547 eV Core-core repulsion = 26705.239972 eV Total energy + Delta-G solvation = -4073.000576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.89089 -40.30779 -38.71594 -37.07270 -36.60097 -33.69960 -33.23940 -31.46078 -31.23445 -31.17280 -30.13619 -27.50473 -26.66439 -24.82917 -23.70986 -22.98210 -22.47022 -22.15963 -21.04691 -20.33041 -18.95648 -17.38157 -17.08143 -16.87005 -16.54300 -16.29579 -15.93007 -15.86489 -15.50388 -14.94761 -14.51299 -14.33455 -14.11896 -13.92480 -13.88555 -13.80252 -13.29259 -13.13391 -12.87361 -12.74944 -12.71010 -12.57533 -12.32267 -12.06034 -11.76293 -11.69583 -11.47361 -11.38319 -10.97957 -10.88276 -10.61815 -10.38580 -10.15617 -9.82600 -9.71428 -9.68718 -9.43708 -9.33994 -9.27861 -9.09497 -8.61778 -8.32540 -8.11987 -6.02636 -4.05004 0.92641 0.99615 1.58817 2.46481 3.30605 3.37884 3.38321 3.41188 3.58037 3.69573 4.15865 4.29213 4.40335 4.42306 4.44060 4.55875 4.80055 4.87605 4.92871 4.95415 5.14250 5.24421 5.29557 5.36353 5.43787 5.55078 5.60935 5.64260 5.74472 5.82067 5.86913 5.91164 6.00630 6.07150 6.14007 6.19444 6.40902 6.48335 6.57123 6.66575 6.77279 6.96187 7.08085 7.11383 7.23230 7.65637 7.72845 7.78948 7.86306 7.93110 7.99266 8.21526 8.41824 8.98482 9.58893 11.05874 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.003009 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.302301 B = 9302.891425 C =10380.923493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 H 0.095 0.905 4 C -0.091 4.091 5 C -0.041 4.041 6 C -0.170 4.170 7 C 0.100 3.900 8 N -0.487 5.487 9 C 0.103 3.897 10 C -0.166 4.166 11 N -0.700 5.700 12 C 0.512 3.488 13 O -0.504 6.504 14 C 0.500 3.500 15 O -0.544 6.544 16 N -0.561 5.561 17 C 0.107 3.893 18 C -0.122 4.122 19 C 0.045 3.955 20 C -0.516 4.516 21 H 0.055 0.945 22 C 0.064 3.936 23 N -0.888 5.888 24 Si 0.887 3.113 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 C -0.117 4.117 29 C 0.065 3.935 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.133 0.867 39 H 0.409 0.591 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.034 0.966 45 H 0.260 0.740 46 H 0.088 0.912 47 H 0.038 0.962 48 H 0.062 0.938 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.214 -9.870 -19.990 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.113 0.887 4 C -0.128 4.128 5 C -0.049 4.049 6 C -0.190 4.190 7 C -0.056 4.056 8 N -0.196 5.196 9 C -0.053 4.053 10 C -0.186 4.186 11 N -0.354 5.354 12 C 0.294 3.706 13 O -0.380 6.380 14 C 0.281 3.719 15 O -0.424 6.424 16 N -0.292 5.292 17 C -0.015 4.015 18 C -0.160 4.160 19 C 0.027 3.973 20 C -0.554 4.554 21 H 0.073 0.927 22 C -0.138 4.138 23 N -0.526 5.526 24 Si 0.715 3.285 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.155 4.155 29 C -0.055 4.055 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.152 0.848 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.151 0.849 39 H 0.245 0.755 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.471 -9.371 -19.944 23.268 hybrid contribution 0.128 0.106 0.464 0.493 sum -7.343 -9.264 -19.480 22.787 Atomic orbital electron populations 1.22193 0.94244 1.02609 1.03199 1.21024 0.94402 0.97765 0.82707 0.88658 1.20998 0.90759 1.02606 0.98453 1.20205 0.95892 0.94001 0.94833 1.22040 0.96431 0.99063 1.01484 1.22784 0.90817 0.96551 0.95490 1.67697 1.41162 1.02420 1.08332 1.22803 0.92874 0.95119 0.94520 1.22057 0.95175 1.00362 1.01025 1.45867 1.66106 1.14727 1.08718 1.20394 0.78642 0.86882 0.84694 1.90542 1.48240 1.15292 1.83907 1.19886 0.80320 0.87092 0.84553 1.90688 1.53204 1.14565 1.83930 1.48189 1.63795 1.09121 1.08107 1.21899 0.98975 0.96913 0.83707 1.22004 0.94326 1.00058 0.99598 1.18683 0.97793 0.88152 0.92708 1.21163 0.99088 0.93715 1.41393 0.92717 1.24953 0.96165 0.97385 0.95265 1.69942 1.27594 1.06151 1.48960 0.86663 0.84571 0.78996 0.78284 1.20738 1.21299 1.19920 1.21945 0.92789 1.02711 0.98065 1.23081 1.00387 0.76266 1.05772 0.91409 0.91201 0.92090 0.89602 0.88519 0.84776 0.82788 0.82692 0.84894 0.75479 0.90102 0.91459 0.91761 0.92922 0.94762 0.93005 0.89341 0.94333 0.91913 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.48 37.16 0.35 -0.85 16 2 C 0.15 1.23 2.56 -67.94 -0.17 1.05 16 3 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.09 -0.54 4.94 -27.88 -0.14 -0.68 16 5 C -0.04 -0.35 4.98 -104.31 -0.52 -0.87 16 6 C -0.17 -1.46 9.82 -39.44 -0.39 -1.85 16 7 C 0.10 1.01 11.18 -17.55 -0.20 0.82 16 8 N -0.49 -5.95 10.36 -13.25 -0.14 -6.08 16 9 C 0.10 1.11 11.18 -17.55 -0.20 0.92 16 10 C -0.17 -1.53 9.26 -39.44 -0.37 -1.90 16 11 N -0.70 -7.61 4.54 -54.24 -0.25 -7.85 16 12 C 0.51 7.65 7.72 -11.58 -0.09 7.56 16 13 O -0.50 -8.47 12.82 5.50 0.07 -8.40 16 14 C 0.50 8.60 7.73 -11.58 -0.09 8.51 16 15 O -0.54 -9.74 15.92 5.49 0.09 -9.65 16 16 N -0.56 -10.40 2.98 -173.24 -0.52 -10.91 16 17 C 0.11 1.93 6.44 -3.71 -0.02 1.91 16 18 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 19 C 0.05 1.10 1.93 -91.73 -0.18 0.92 16 20 C -0.52 -14.00 8.49 -34.44 -0.29 -14.29 16 21 H 0.05 1.48 7.76 -52.49 -0.41 1.08 16 22 C 0.06 1.76 5.21 -17.82 -0.09 1.66 16 23 N -0.89 -25.14 12.06 55.43 0.67 -24.47 16 24 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 C -0.12 -2.69 5.21 -26.61 -0.14 -2.83 16 29 C 0.07 1.29 5.99 -3.69 -0.02 1.27 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.10 0.40 8.10 -51.93 -0.42 -0.02 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.13 0.99 7.65 -52.49 -0.40 0.58 16 39 H 0.41 3.97 7.41 -40.82 -0.30 3.67 16 40 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.03 0.91 8.11 -51.93 -0.42 0.48 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.09 2.27 6.78 -51.93 -0.35 1.91 16 47 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.12 2.39 4.29 -54.94 -0.24 2.15 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -32.00 397.38 -9.30 -41.30 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.50 Total: 5.12 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.69 Total: -1.29 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.23 Total: -49.32 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.16 Total: -18.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.00 -9.30 -41.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323102970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.508 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds