Wall clock time and date at job start Wed Apr 1 2020 04:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46906 * 2 1 4 4 C 1.52996 * 109.47171 * 240.00422 * 2 1 3 5 5 C 1.50706 * 109.47367 * 174.99639 * 4 2 1 6 6 C 1.38649 * 120.78825 * 269.71873 * 5 4 2 7 7 C 1.38200 * 119.15819 * 179.79664 * 6 5 4 8 8 N 1.31874 * 120.76711 * 0.48829 * 7 6 5 9 9 C 1.31868 * 121.72164 * 359.73716 * 8 7 6 10 10 C 1.38201 * 120.76995 * 0.02829 * 9 8 7 11 11 N 1.46497 * 109.47447 * 120.00062 * 2 1 3 12 12 C 1.34776 * 119.99865 * 274.99997 * 11 2 1 13 13 O 1.21347 * 120.00343 * 0.02562 * 12 11 2 14 14 C 1.49453 * 120.00093 * 180.02562 * 12 11 2 15 15 O 1.21356 * 119.99553 * 354.37049 * 14 12 11 16 16 N 1.34779 * 120.00400 * 174.37080 * 14 12 11 17 17 C 1.46927 * 120.63054 * 171.53943 * 16 14 12 18 18 C 1.53195 * 108.89085 * 126.46258 * 17 16 14 19 19 C 1.53044 * 109.31137 * 54.56242 * 18 17 16 20 20 C 1.50693 * 109.45744 * 178.62720 * 19 18 17 21 21 H 1.07997 * 120.00308 * 5.05067 * 20 19 18 22 22 C 1.37882 * 119.99961 * 185.05086 * 20 19 18 23 23 N 1.31509 * 119.99822 * 8.09728 * 22 20 19 24 24 Si 1.86797 * 119.99930 * 188.09915 * 22 20 19 25 25 H 1.48501 * 109.47335 * 94.98946 * 24 22 20 26 26 H 1.48504 * 109.47303 * 214.98623 * 24 22 20 27 27 H 1.48503 * 109.47400 * 334.98613 * 24 22 20 28 28 C 1.53036 * 109.53957 * 298.63565 * 19 18 17 29 29 C 1.46959 * 120.65209 * 351.36065 * 16 14 12 30 30 H 1.08999 * 109.47026 * 299.99377 * 1 2 3 31 31 H 1.08991 * 109.47610 * 59.99873 * 1 2 3 32 32 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46970 * 294.99191 * 4 2 1 34 34 H 1.09002 * 109.47436 * 54.99736 * 4 2 1 35 35 H 1.07995 * 120.42067 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.61711 * 180.20583 * 7 6 5 37 37 H 1.08003 * 119.61225 * 179.97438 * 9 8 7 38 38 H 1.07994 * 120.42028 * 179.97438 * 10 9 8 39 39 H 0.97003 * 120.00337 * 95.00263 * 11 2 1 40 40 H 1.08998 * 109.58344 * 6.60490 * 17 16 14 41 41 H 1.09000 * 109.58489 * 246.31961 * 17 16 14 42 42 H 1.08999 * 109.49827 * 174.51638 * 18 17 16 43 43 H 1.08999 * 109.49486 * 294.57920 * 18 17 16 44 44 H 1.09004 * 109.45697 * 58.65837 * 19 18 17 45 45 H 0.97001 * 119.99998 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.50103 * 181.31588 * 28 19 18 47 47 H 1.09007 * 109.49742 * 301.41185 * 28 19 18 48 48 H 1.08995 * 109.47150 * 113.74869 * 29 16 14 49 49 H 1.09006 * 109.70954 * 353.45983 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 6 4.1513 0.4426 -1.9709 7 6 5.5313 0.5091 -2.0048 8 7 6.2659 -0.4225 -1.4292 9 6 5.7207 -1.4443 -0.7987 10 6 4.3471 -1.5750 -0.7195 11 7 2.0184 -0.6906 1.1961 12 6 2.1471 -0.0182 2.3571 13 8 1.8581 1.1590 2.4117 14 6 2.6459 -0.7226 3.5772 15 8 2.8378 -1.9206 3.5503 16 7 2.8827 -0.0273 4.7073 17 6 3.1939 -0.7235 5.9632 18 6 4.5023 -0.1632 6.5297 19 6 4.3851 1.3566 6.6660 20 6 5.6582 1.9075 7.2547 21 1 6.4992 1.2533 7.4305 22 6 5.7493 3.2470 7.5688 23 7 4.6810 4.0113 7.5059 24 14 7.3903 3.9760 8.0837 25 1 8.0608 4.5714 6.9000 26 1 7.1652 5.0288 9.1066 27 1 8.2496 2.9075 8.6540 28 6 4.1507 1.9776 5.2871 29 6 2.8383 1.4416 4.7064 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6053 -0.2616 -2.1370 35 1 3.5551 1.2060 -2.4485 36 1 6.0137 1.3313 -2.5125 37 1 6.3550 -2.1882 -0.3395 38 1 3.9066 -2.4143 -0.2020 39 1 2.2491 -1.6318 1.1526 40 1 3.3061 -1.7906 5.7713 41 1 2.3876 -0.5637 6.6790 42 1 4.6925 -0.6027 7.5089 43 1 5.3240 -0.4062 5.8561 44 1 3.5478 1.5990 7.3205 45 1 4.7451 4.9537 7.7266 46 1 4.0906 3.0619 5.3818 47 1 4.9757 1.7150 4.6248 48 1 2.0026 1.7802 5.3187 49 1 2.7148 1.8051 3.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323102970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:12 Heat of formation + Delta-G solvation = -53.539333 kcal Electronic energy + Delta-G solvation = -30779.096913 eV Core-core repulsion = 26705.239972 eV Total energy + Delta-G solvation = -4073.856941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.06975 -41.11954 -39.96664 -38.58899 -37.57601 -35.37313 -34.23845 -33.05942 -32.17196 -31.96080 -31.81887 -28.39765 -28.08481 -26.32230 -24.42854 -24.33734 -24.03901 -23.20663 -21.93373 -21.64018 -20.51321 -18.75341 -18.39626 -18.13494 -17.58689 -17.43454 -17.12019 -16.71664 -16.53355 -16.47997 -16.07601 -15.41183 -15.32954 -14.89159 -14.82387 -14.75818 -14.63047 -14.56379 -14.43297 -14.03877 -13.91662 -13.48394 -13.24881 -13.19616 -13.15913 -12.82442 -12.68167 -12.55734 -12.37272 -12.33264 -12.20000 -12.06097 -12.00084 -11.53973 -11.10642 -10.94803 -10.55845 -10.47869 -10.44695 -10.32972 -10.08957 -10.00273 -9.70656 -8.13152 -6.22203 0.22168 0.30301 0.32149 1.30086 1.38955 1.41364 1.50434 2.09529 2.42296 2.46615 2.85982 3.16786 3.26175 3.56212 3.63378 3.83228 3.88332 4.08020 4.19030 4.24797 4.25669 4.27962 4.29153 4.32881 4.43845 4.53001 4.58549 4.66577 4.72565 4.77727 4.87952 4.88608 4.91157 4.96073 5.01827 5.10485 5.12175 5.16821 5.28536 5.33475 5.34326 5.37586 5.49732 5.61815 5.81830 5.93214 5.96768 6.03117 6.26705 6.35327 6.67913 6.88185 6.92937 7.06246 7.44649 8.94390 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.003009 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.302301 B = 9302.891425 C =10380.923493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.079 0.921 4 C -0.080 4.080 5 C -0.046 4.046 6 C -0.170 4.170 7 C 0.079 3.921 8 N -0.523 5.523 9 C 0.078 3.922 10 C -0.171 4.171 11 N -0.680 5.680 12 C 0.512 3.488 13 O -0.527 6.527 14 C 0.499 3.501 15 O -0.548 6.548 16 N -0.571 5.571 17 C 0.112 3.888 18 C -0.113 4.113 19 C 0.043 3.957 20 C -0.536 4.536 21 H 0.050 0.950 22 C 0.018 3.982 23 N -0.914 5.914 24 Si 0.946 3.054 25 H -0.279 1.279 26 H -0.282 1.282 27 H -0.269 1.269 28 C -0.106 4.106 29 C 0.083 3.917 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.417 0.583 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.008 0.992 45 H 0.261 0.739 46 H 0.058 0.942 47 H 0.027 0.973 48 H 0.059 0.941 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 -10.955 -21.718 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.097 0.903 4 C -0.117 4.117 5 C -0.054 4.054 6 C -0.189 4.189 7 C -0.077 4.077 8 N -0.233 5.233 9 C -0.078 4.078 10 C -0.191 4.191 11 N -0.333 5.333 12 C 0.293 3.707 13 O -0.405 6.405 14 C 0.282 3.718 15 O -0.428 6.428 16 N -0.303 5.303 17 C -0.010 4.010 18 C -0.151 4.151 19 C 0.025 3.975 20 C -0.574 4.574 21 H 0.068 0.932 22 C -0.181 4.181 23 N -0.553 5.553 24 Si 0.773 3.227 25 H -0.205 1.205 26 H -0.208 1.208 27 H -0.193 1.193 28 C -0.145 4.145 29 C -0.038 4.038 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.179 0.821 36 H 0.186 0.814 37 H 0.179 0.821 38 H 0.168 0.832 39 H 0.255 0.745 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.045 0.955 48 H 0.078 0.922 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.648 -10.506 -21.707 25.620 hybrid contribution 0.487 0.399 0.945 1.136 sum -8.161 -10.107 -20.762 24.491 Atomic orbital electron populations 1.22156 0.92875 1.03528 1.03159 1.21244 0.95364 0.97040 0.82392 0.90319 1.21038 0.88785 1.03911 0.97976 1.20550 0.97306 0.93479 0.94101 1.22374 0.96032 0.99579 1.00961 1.23173 0.91938 0.96767 0.95822 1.67651 1.42563 1.03513 1.09594 1.23060 0.94092 0.95393 0.95242 1.22292 0.94680 1.01153 1.00965 1.45899 1.64247 1.14998 1.08168 1.20015 0.79015 0.86605 0.85068 1.90518 1.49801 1.16085 1.84130 1.20319 0.79567 0.87107 0.84840 1.90678 1.53178 1.14793 1.84107 1.48164 1.64781 1.08458 1.08874 1.21839 0.97805 0.97370 0.83943 1.21846 0.95655 0.97472 1.00108 1.18634 0.95649 0.90756 0.92495 1.21529 1.00043 0.94157 1.41680 0.93208 1.25662 0.99191 0.97810 0.95444 1.70049 1.29266 1.06317 1.49659 0.85721 0.80791 0.78284 0.77949 1.20502 1.20792 1.19347 1.21721 0.94377 1.00898 0.97490 1.22803 0.98013 0.77230 1.05793 0.94004 0.88732 0.90671 0.87505 0.85600 0.82123 0.81386 0.82148 0.83209 0.74534 0.88648 0.90360 0.91019 0.93761 0.97364 0.92965 0.92303 0.95459 0.92225 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 71.98 0.68 -1.13 16 2 C 0.14 1.98 2.56 44.99 0.12 2.10 16 3 H 0.08 1.43 7.58 -2.39 -0.02 1.41 16 4 C -0.08 -0.63 4.94 29.85 0.15 -0.48 16 5 C -0.05 -0.66 4.98 -19.67 -0.10 -0.76 16 6 C -0.17 -2.56 9.82 22.36 0.22 -2.34 16 7 C 0.08 1.55 11.18 84.68 0.95 2.50 16 8 N -0.52 -12.89 10.36 -195.84 -2.03 -14.91 16 9 C 0.08 1.67 11.18 84.68 0.95 2.62 16 10 C -0.17 -2.87 9.26 22.36 0.21 -2.66 16 11 N -0.68 -13.19 4.54 -443.88 -2.01 -15.20 16 12 C 0.51 14.63 7.72 87.27 0.67 15.30 16 13 O -0.53 -17.34 12.82 -3.24 -0.04 -17.38 16 14 C 0.50 16.55 7.73 87.27 0.67 17.22 16 15 O -0.55 -18.57 15.92 -3.27 -0.05 -18.62 16 16 N -0.57 -20.85 2.98 -820.37 -2.44 -23.30 16 17 C 0.11 3.96 6.44 86.36 0.56 4.51 16 18 C -0.11 -4.65 5.30 30.67 0.16 -4.49 16 19 C 0.04 2.15 1.93 -11.52 -0.02 2.13 16 20 C -0.54 -29.71 8.49 25.60 0.22 -29.49 16 21 H 0.05 2.74 7.76 -2.91 -0.02 2.72 16 22 C 0.02 1.01 5.21 84.66 0.44 1.45 16 23 N -0.91 -52.87 12.06 21.45 0.26 -52.62 16 24 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 C -0.11 -5.05 5.21 30.67 0.16 -4.89 16 29 C 0.08 3.30 5.99 86.36 0.52 3.82 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.11 0.48 8.10 -2.38 -0.02 0.46 16 34 H 0.13 0.37 8.10 -2.39 -0.02 0.35 16 35 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.15 1.86 7.65 -2.91 -0.02 1.84 16 39 H 0.42 6.88 7.41 -92.71 -0.69 6.20 16 40 H 0.10 3.12 7.00 -2.39 -0.02 3.10 16 41 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.01 0.45 8.11 -2.39 -0.02 0.43 16 45 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 46 H 0.06 3.13 6.78 -2.39 -0.02 3.12 16 47 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 48 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.13 5.10 4.29 -50.11 -0.22 4.88 16 Total: -1.00 -70.73 397.38 2.32 -68.41 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.07 Total: 22.09 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.55 Total: 5.42 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -6.23 Total: -106.03 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.09 Total: -36.00 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.73 2.32 -68.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323102970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.875 kcal (2) G-P(sol) polarization free energy of solvation -70.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds