Wall clock time and date at job start Wed Apr 1 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00050 * 9 7 5 11 11 H 1.48500 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46942 * 299.99859 * 9 7 5 13 13 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 14 14 C 1.38233 * 119.99662 * 279.72689 * 13 2 1 15 15 C 1.38240 * 119.99763 * 179.76498 * 14 13 2 16 16 C 1.38238 * 119.99745 * 0.48587 * 15 14 13 17 17 C 1.50703 * 119.99977 * 179.76499 * 16 15 14 18 18 N 1.46498 * 109.47193 * 270.02537 * 17 16 15 19 19 C 1.34779 * 119.99760 * 179.97438 * 18 17 16 20 20 O 1.21270 * 120.00069 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99750 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47344 * 180.02562 * 21 19 18 23 23 H 1.09009 * 110.43637 * 305.70440 * 22 21 19 24 24 C 1.54628 * 110.49163 * 183.16009 * 22 21 19 25 25 C 1.54827 * 101.60693 * 266.08176 * 24 22 21 26 26 N 1.46771 * 105.49070 * 334.56717 * 25 24 22 27 27 C 1.34418 * 111.30134 * 17.03541 * 26 25 24 28 28 O 1.21283 * 124.93778 * 179.62609 * 27 26 25 29 29 C 1.38230 * 120.00026 * 359.79205 * 16 15 14 30 30 C 1.38231 * 120.00201 * 359.95424 * 29 16 15 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 34 34 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 35 35 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 36 36 H 1.08003 * 120.00479 * 0.02562 * 14 13 2 37 37 H 1.07996 * 120.00487 * 180.25275 * 15 14 13 38 38 H 1.09002 * 109.46637 * 30.02498 * 17 16 15 39 39 H 1.08998 * 109.47319 * 150.02276 * 17 16 15 40 40 H 0.97001 * 120.00089 * 0.02562 * 18 17 16 41 41 H 1.09004 * 109.47699 * 300.00440 * 21 19 18 42 42 H 1.08998 * 109.47096 * 60.00097 * 21 19 18 43 43 H 1.08997 * 110.96323 * 24.24040 * 24 22 21 44 44 H 1.09000 * 110.96906 * 147.99400 * 24 22 21 45 45 H 1.08994 * 110.22088 * 215.56969 * 25 24 22 46 46 H 1.08998 * 110.33134 * 93.61650 * 25 24 22 47 47 H 0.97002 * 124.34789 * 197.06093 * 26 25 24 48 48 H 1.08003 * 120.00063 * 179.97438 * 29 16 15 49 49 H 1.08003 * 120.00511 * 180.02562 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8058 5.5288 11 1 3.3003 -0.6481 6.1681 12 1 3.7446 1.3931 4.9371 13 6 2.0323 -0.7104 -1.2305 14 6 2.0719 -2.0918 -1.2632 15 6 2.5281 -2.7436 -2.3937 16 6 2.9541 -2.0138 -3.4877 17 6 3.4563 -2.7242 -4.7182 18 7 4.9015 -2.9355 -4.6044 19 6 5.5717 -3.5573 -5.5947 20 8 4.9785 -3.9414 -6.5802 21 6 7.0584 -3.7742 -5.4779 22 6 7.5684 -4.4955 -6.7270 23 1 7.0062 -5.4148 -6.8919 24 6 9.0787 -4.8008 -6.5972 25 6 9.7063 -3.5735 -7.3022 26 7 8.6834 -3.0943 -8.2394 27 6 7.4721 -3.5921 -7.9366 28 8 6.4507 -3.3522 -8.5450 29 6 2.9198 -0.6324 -3.4528 30 6 2.4587 0.0193 -2.3243 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.2493 -2.3958 4.2417 36 1 1.7426 -2.6620 -0.4071 37 1 2.5553 -3.8229 -2.4208 38 1 2.9546 -3.6874 -4.8119 39 1 3.2461 -2.1178 -5.5992 40 1 5.3760 -2.6286 -3.8159 41 1 7.5600 -2.8109 -5.3848 42 1 7.2691 -4.3800 -4.5966 43 1 9.3785 -4.8473 -5.5503 44 1 9.3361 -5.7239 -7.1165 45 1 10.6051 -3.8688 -7.8434 46 1 9.9430 -2.7982 -6.5735 47 1 8.8591 -2.4956 -8.9821 48 1 3.2529 -0.0621 -4.3074 49 1 2.4315 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326467941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:37 Heat of formation + Delta-G solvation = -41.000191 kcal Electronic energy + Delta-G solvation = -28985.285162 eV Core-core repulsion = 24911.971959 eV Total energy + Delta-G solvation = -4073.313203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94440 -39.67155 -38.93437 -36.60334 -35.95631 -34.44943 -33.19717 -32.32673 -30.72683 -30.44286 -29.30334 -28.32257 -26.76884 -25.28153 -23.86338 -22.57874 -22.22835 -21.66188 -20.91095 -20.06570 -19.69378 -17.86427 -17.49728 -17.25081 -16.40660 -16.16730 -15.89522 -15.47656 -15.21974 -14.79730 -14.71089 -14.36543 -14.03573 -13.98773 -13.72130 -13.47437 -13.37738 -13.18096 -13.04115 -12.95192 -12.87315 -12.69390 -12.24397 -12.13533 -11.95613 -11.75136 -11.60342 -11.36727 -11.15632 -10.91457 -10.84413 -10.61820 -10.32764 -10.07053 -10.00361 -9.78578 -9.69062 -9.42079 -9.09699 -8.99499 -8.63534 -8.30669 -7.02227 -5.81088 -3.09778 1.48595 1.69305 2.40934 2.61268 3.04080 3.15331 3.41140 3.45709 3.46440 3.96661 3.98994 4.12568 4.25723 4.52957 4.55890 4.63874 4.74911 4.90837 4.94142 5.02443 5.04995 5.15552 5.23072 5.32188 5.34324 5.38993 5.41317 5.54232 5.59890 5.69274 5.73080 5.78653 5.97354 6.02246 6.25667 6.30573 6.35468 6.36252 6.49961 6.52556 6.61938 6.71278 6.72885 6.78597 6.94663 7.15680 7.28195 7.44180 7.65718 8.06885 8.19819 8.37376 9.48635 10.04296 10.39716 11.41513 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.001882 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.918462 B =14874.017734 C =15964.149926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.204 3.796 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.054 4.054 14 C -0.106 4.106 15 C -0.099 4.099 16 C -0.129 4.129 17 C 0.169 3.831 18 N -0.728 5.728 19 C 0.499 3.501 20 O -0.512 6.512 21 C -0.126 4.126 22 C -0.109 4.109 23 H 0.113 0.887 24 C -0.132 4.132 25 C 0.100 3.900 26 N -0.742 5.742 27 C 0.517 3.483 28 O -0.498 6.498 29 C -0.103 4.103 30 C -0.121 4.121 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.402 0.598 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.408 0.592 48 H 0.116 0.884 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.124 -4.130 -20.630 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.363 5.363 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.055 4.055 14 C -0.124 4.124 15 C -0.118 4.118 16 C -0.129 4.129 17 C 0.046 3.954 18 N -0.381 5.381 19 C 0.284 3.716 20 O -0.387 6.387 21 C -0.166 4.166 22 C -0.131 4.131 23 H 0.131 0.869 24 C -0.169 4.169 25 C -0.025 4.025 26 N -0.400 5.400 27 C 0.302 3.698 28 O -0.370 6.370 29 C -0.121 4.121 30 C -0.140 4.140 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.236 0.764 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.246 0.754 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.101 -4.262 -21.439 24.985 hybrid contribution 0.618 0.636 1.167 1.466 sum 12.719 -3.626 -20.272 24.205 Atomic orbital electron populations 1.22418 0.98226 1.01180 1.00152 1.19251 0.92154 0.94983 0.84218 0.92640 1.42512 1.78227 1.10704 1.04906 1.19199 1.36721 0.93971 0.87177 0.91136 1.24740 1.02046 0.96015 0.98087 1.69648 1.50727 1.08660 1.29065 0.86258 0.77804 0.78591 0.83466 1.21243 1.21693 1.21273 1.20522 0.95345 0.94064 0.95610 1.21085 0.99154 0.94421 0.97739 1.21016 0.98495 0.99473 0.92811 1.19677 1.03772 0.93839 0.95650 1.20096 0.80061 0.99881 0.95386 1.46131 1.09042 1.60777 1.22118 1.20567 0.89580 0.78439 0.83016 1.90834 1.69595 1.48851 1.29401 1.21549 0.93432 1.02925 0.98694 1.21717 0.97280 1.00455 0.93666 0.86880 1.22779 0.93388 0.98226 1.02553 1.22103 0.91420 0.96393 0.92538 1.46294 1.09443 1.51251 1.32979 1.20743 0.82920 0.80787 0.85382 1.90832 1.31459 1.60157 1.54575 1.20926 0.99666 0.93553 0.98004 1.21011 1.00045 0.99768 0.93169 0.93306 0.92394 0.94309 0.77997 0.93425 0.85397 0.86344 0.90959 0.91056 0.76410 0.88710 0.87450 0.88715 0.89544 0.90331 0.91058 0.75364 0.86555 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.47 37.16 0.35 -2.52 16 2 C 0.20 4.00 3.09 -69.08 -0.21 3.79 16 3 H 0.06 1.10 7.94 -51.93 -0.41 0.68 16 4 N -0.72 -17.60 5.07 -54.55 -0.28 -17.88 16 5 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 9 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.05 -0.93 4.96 -104.62 -0.52 -1.45 16 14 C -0.11 -1.76 9.06 -39.58 -0.36 -2.11 16 15 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 16 C -0.13 -1.66 5.25 -104.62 -0.55 -2.20 16 17 C 0.17 2.02 5.80 -5.19 -0.03 1.99 16 18 N -0.73 -7.75 5.55 -61.47 -0.34 -8.09 16 19 C 0.50 5.79 7.62 -10.98 -0.08 5.70 16 20 O -0.51 -8.23 13.82 -15.98 -0.22 -8.45 16 21 C -0.13 -0.90 5.11 -27.88 -0.14 -1.04 16 22 C -0.11 -0.84 2.54 -90.63 -0.23 -1.07 16 23 H 0.11 1.01 7.96 -51.92 -0.41 0.59 16 24 C -0.13 -0.48 6.74 -24.91 -0.17 -0.65 16 25 C 0.10 0.35 7.79 -2.93 -0.02 0.33 16 26 N -0.74 -5.08 6.24 -59.01 -0.37 -5.44 16 27 C 0.52 5.61 7.41 -10.86 -0.08 5.53 16 28 O -0.50 -8.11 16.03 -15.99 -0.26 -8.37 16 29 C -0.10 -1.34 9.70 -39.59 -0.38 -1.73 16 30 C -0.12 -1.78 9.67 -39.59 -0.38 -2.17 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.38 9.87 6.05 -40.82 -0.25 9.62 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.13 2.29 6.90 -52.48 -0.36 1.92 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.40 3.61 8.46 -40.82 -0.35 3.27 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.11 0.50 8.13 -51.93 -0.42 0.07 16 43 H 0.09 0.17 7.90 -51.93 -0.41 -0.24 16 44 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 46 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.41 2.34 8.96 -40.82 -0.37 1.97 16 48 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 49 H 0.12 1.58 8.04 -52.48 -0.42 1.16 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -36.16 405.75 -10.68 -46.84 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -7.59 Total: 11.60 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.44 Total: -6.48 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.26 Total: -58.21 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.48 Total: -16.82 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.16 -10.68 -46.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326467941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.839 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds