Wall clock time and date at job start Wed Apr 1 2020 03:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00050 * 9 7 5 11 11 H 1.48500 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46942 * 299.99859 * 9 7 5 13 13 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 14 14 C 1.38233 * 119.99662 * 279.72689 * 13 2 1 15 15 C 1.38240 * 119.99763 * 179.76498 * 14 13 2 16 16 C 1.38238 * 119.99745 * 0.48587 * 15 14 13 17 17 C 1.50703 * 119.99977 * 179.76499 * 16 15 14 18 18 N 1.46498 * 109.47193 * 270.02537 * 17 16 15 19 19 C 1.34779 * 119.99760 * 179.97438 * 18 17 16 20 20 O 1.21270 * 120.00069 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99750 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47344 * 180.02562 * 21 19 18 23 23 H 1.09009 * 110.43637 * 305.70440 * 22 21 19 24 24 C 1.54628 * 110.49163 * 183.16009 * 22 21 19 25 25 C 1.54827 * 101.60693 * 266.08176 * 24 22 21 26 26 N 1.46771 * 105.49070 * 334.56717 * 25 24 22 27 27 C 1.34418 * 111.30134 * 17.03541 * 26 25 24 28 28 O 1.21283 * 124.93778 * 179.62609 * 27 26 25 29 29 C 1.38230 * 120.00026 * 359.79205 * 16 15 14 30 30 C 1.38231 * 120.00201 * 359.95424 * 29 16 15 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 34 34 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 35 35 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 36 36 H 1.08003 * 120.00479 * 0.02562 * 14 13 2 37 37 H 1.07996 * 120.00487 * 180.25275 * 15 14 13 38 38 H 1.09002 * 109.46637 * 30.02498 * 17 16 15 39 39 H 1.08998 * 109.47319 * 150.02276 * 17 16 15 40 40 H 0.97001 * 120.00089 * 0.02562 * 18 17 16 41 41 H 1.09004 * 109.47699 * 300.00440 * 21 19 18 42 42 H 1.08998 * 109.47096 * 60.00097 * 21 19 18 43 43 H 1.08997 * 110.96323 * 24.24040 * 24 22 21 44 44 H 1.09000 * 110.96906 * 147.99400 * 24 22 21 45 45 H 1.08994 * 110.22088 * 215.56969 * 25 24 22 46 46 H 1.08998 * 110.33134 * 93.61650 * 25 24 22 47 47 H 0.97002 * 124.34789 * 197.06093 * 26 25 24 48 48 H 1.08003 * 120.00063 * 179.97438 * 29 16 15 49 49 H 1.08003 * 120.00511 * 180.02562 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8058 5.5288 11 1 3.3003 -0.6481 6.1681 12 1 3.7446 1.3931 4.9371 13 6 2.0323 -0.7104 -1.2305 14 6 2.0719 -2.0918 -1.2632 15 6 2.5281 -2.7436 -2.3937 16 6 2.9541 -2.0138 -3.4877 17 6 3.4563 -2.7242 -4.7182 18 7 4.9015 -2.9355 -4.6044 19 6 5.5717 -3.5573 -5.5947 20 8 4.9785 -3.9414 -6.5802 21 6 7.0584 -3.7742 -5.4779 22 6 7.5684 -4.4955 -6.7270 23 1 7.0062 -5.4148 -6.8919 24 6 9.0787 -4.8008 -6.5972 25 6 9.7063 -3.5735 -7.3022 26 7 8.6834 -3.0943 -8.2394 27 6 7.4721 -3.5921 -7.9366 28 8 6.4507 -3.3522 -8.5450 29 6 2.9198 -0.6324 -3.4528 30 6 2.4587 0.0193 -2.3243 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.2493 -2.3958 4.2417 36 1 1.7426 -2.6620 -0.4071 37 1 2.5553 -3.8229 -2.4208 38 1 2.9546 -3.6874 -4.8119 39 1 3.2461 -2.1178 -5.5992 40 1 5.3760 -2.6286 -3.8159 41 1 7.5600 -2.8109 -5.3848 42 1 7.2691 -4.3800 -4.5966 43 1 9.3785 -4.8473 -5.5503 44 1 9.3361 -5.7239 -7.1165 45 1 10.6051 -3.8688 -7.8434 46 1 9.9430 -2.7982 -6.5735 47 1 8.8591 -2.4956 -8.9821 48 1 3.2529 -0.0621 -4.3074 49 1 2.4315 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326467941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:36 Heat of formation + Delta-G solvation = -66.303142 kcal Electronic energy + Delta-G solvation = -28986.382380 eV Core-core repulsion = 24911.971959 eV Total energy + Delta-G solvation = -4074.410421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.63826 -40.73492 -39.95960 -37.43537 -37.34163 -35.69412 -34.11980 -33.76059 -31.96121 -31.69670 -30.23003 -29.64999 -27.61166 -26.31021 -25.64383 -23.79677 -22.97375 -22.61784 -21.75194 -21.11748 -20.70237 -19.38051 -18.58128 -18.06626 -17.30307 -17.14679 -16.86614 -16.68015 -16.25610 -16.12401 -15.76174 -15.57460 -15.09181 -15.04950 -14.74292 -14.68133 -14.45529 -14.37469 -14.24136 -13.77674 -13.63600 -13.58207 -13.44540 -13.31581 -13.01617 -12.89410 -12.80689 -12.69325 -12.42107 -12.17826 -12.13184 -12.01019 -11.85449 -11.59410 -11.53599 -10.99233 -10.93833 -10.62165 -10.05514 -9.97575 -9.79330 -9.53291 -9.01200 -7.92502 -5.20844 0.31722 0.52940 1.48691 1.51213 1.57117 1.64573 1.75606 2.28805 2.52942 2.57603 2.94034 3.41458 3.46010 3.57525 3.67953 3.79175 3.87155 3.98709 4.03047 4.06560 4.15327 4.22278 4.34948 4.41951 4.52558 4.54709 4.59009 4.67588 4.75121 4.77538 4.79810 4.82031 4.95931 5.00916 5.06819 5.11873 5.14327 5.22324 5.24278 5.41506 5.45829 5.51679 5.55876 5.64123 5.83821 6.00879 6.09532 6.09695 6.29643 6.60610 7.33240 7.35926 7.40006 8.10226 8.34943 9.30791 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.001882 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.918462 B =14874.017734 C =15964.149926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.199 3.801 3 H 0.055 0.945 4 N -0.733 5.733 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.278 1.278 13 C -0.074 4.074 14 C -0.122 4.122 15 C -0.097 4.097 16 C -0.113 4.113 17 C 0.174 3.826 18 N -0.720 5.720 19 C 0.491 3.509 20 O -0.562 6.562 21 C -0.118 4.118 22 C -0.110 4.110 23 H 0.093 0.907 24 C -0.119 4.119 25 C 0.095 3.905 26 N -0.732 5.732 27 C 0.502 3.498 28 O -0.568 6.568 29 C -0.095 4.095 30 C -0.120 4.120 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.375 0.625 35 H 0.251 0.749 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.412 0.588 41 H 0.115 0.885 42 H 0.142 0.858 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.411 0.589 48 H 0.142 0.858 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.437 -3.241 -20.962 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.091 3.909 3 H 0.073 0.927 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.206 1.206 11 H -0.223 1.223 12 H -0.204 1.204 13 C -0.075 4.075 14 C -0.140 4.140 15 C -0.116 4.116 16 C -0.114 4.114 17 C 0.050 3.950 18 N -0.374 5.374 19 C 0.279 3.721 20 O -0.440 6.440 21 C -0.158 4.158 22 C -0.132 4.132 23 H 0.111 0.889 24 C -0.157 4.157 25 C -0.029 4.029 26 N -0.388 5.388 27 C 0.288 3.712 28 O -0.446 6.446 29 C -0.114 4.114 30 C -0.138 4.138 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.123 0.877 37 H 0.150 0.850 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.248 0.752 41 H 0.133 0.867 42 H 0.160 0.840 43 H 0.142 0.858 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.109 0.891 47 H 0.250 0.750 48 H 0.159 0.841 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.465 -3.326 -21.768 26.347 hybrid contribution -0.082 0.374 1.116 1.180 sum 14.383 -2.952 -20.653 25.340 Atomic orbital electron populations 1.22266 0.96957 1.00873 1.00862 1.19405 0.92923 0.94734 0.83792 0.92683 1.42699 1.78480 1.10451 1.05856 1.19590 1.35016 0.94288 0.88225 0.90583 1.25527 1.02974 0.96919 1.01353 1.69808 1.52538 1.10146 1.29469 0.85238 0.77897 0.77332 0.79447 1.20600 1.22302 1.20377 1.20322 0.97393 0.94231 0.95557 1.20973 1.00587 0.94417 0.98041 1.21109 0.97938 1.00283 0.92232 1.19735 1.02456 0.93927 0.95233 1.19950 0.81094 0.99428 0.94511 1.46068 1.08426 1.60438 1.22441 1.21413 0.91424 0.77257 0.82029 1.90827 1.70986 1.50871 1.31317 1.21647 0.89870 1.04596 0.99681 1.21732 1.00114 0.98893 0.92495 0.88884 1.22846 0.89733 0.98555 1.04562 1.22441 0.91030 0.96860 0.92524 1.46405 1.09153 1.50105 1.33127 1.21403 0.82921 0.80987 0.85847 1.90785 1.34054 1.62783 1.56969 1.21175 0.98449 0.93642 0.98113 1.21171 0.99357 1.00617 0.92692 0.94119 0.93818 0.91332 0.79162 0.94072 0.87661 0.84972 0.91435 0.91573 0.75166 0.86671 0.84020 0.85796 0.88810 0.87967 0.89130 0.75023 0.84063 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.47 71.98 0.68 -4.65 16 2 C 0.20 7.81 3.09 44.25 0.14 7.95 16 3 H 0.06 2.14 7.94 -2.39 -0.02 2.12 16 4 N -0.73 -36.42 5.07 -326.49 -1.66 -38.08 16 5 C -0.24 -13.07 9.93 84.03 0.83 -12.23 16 6 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 7 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 8 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 9 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 C -0.07 -2.49 4.96 -19.87 -0.10 -2.59 16 14 C -0.12 -4.07 9.06 22.27 0.20 -3.87 16 15 C -0.10 -2.65 9.70 22.27 0.22 -2.43 16 16 C -0.11 -2.71 5.25 -19.87 -0.10 -2.81 16 17 C 0.17 3.95 5.80 85.63 0.50 4.45 16 18 N -0.72 -14.18 5.55 -466.80 -2.59 -16.77 16 19 C 0.49 10.96 7.62 87.66 0.67 11.62 16 20 O -0.56 -18.52 13.82 17.60 0.24 -18.28 16 21 C -0.12 -1.39 5.11 29.85 0.15 -1.24 16 22 C -0.11 -1.53 2.54 -10.80 -0.03 -1.56 16 23 H 0.09 1.67 7.96 -2.38 -0.02 1.65 16 24 C -0.12 -0.44 6.74 31.77 0.21 -0.23 16 25 C 0.09 0.32 7.79 86.95 0.68 1.00 16 26 N -0.73 -8.91 6.24 -459.21 -2.87 -11.78 16 27 C 0.50 10.85 7.41 87.90 0.65 11.50 16 28 O -0.57 -19.52 16.03 17.56 0.28 -19.24 16 29 C -0.10 -2.25 9.70 22.27 0.22 -2.04 16 30 C -0.12 -3.29 9.67 22.27 0.22 -3.07 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.37 19.89 6.05 -92.71 -0.56 19.33 16 35 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.11 3.96 6.90 -2.91 -0.02 3.94 16 37 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 39 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 40 H 0.41 6.39 8.46 -92.71 -0.78 5.61 16 41 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.14 0.72 8.13 -2.39 -0.02 0.70 16 43 H 0.12 -0.20 7.90 -2.39 -0.02 -0.22 16 44 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.41 4.31 8.96 -92.71 -0.83 3.48 16 48 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 49 H 0.14 3.25 8.04 -2.91 -0.02 3.22 16 Total: -1.00 -83.08 405.75 0.13 -82.95 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -1.19 Total: 35.85 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 5.60 Total: -4.02 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -6.83 Total: -124.76 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: 0.52 Total: -37.52 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -83.08 0.13 -82.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326467941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.642 kcal (2) G-P(sol) polarization free energy of solvation -83.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds