Wall clock time and date at job start Wed Apr 1 2020 03:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47395 * 2 1 4 4 N 1.46504 * 109.47456 * 240.00666 * 2 1 3 5 5 C 1.36932 * 120.00060 * 84.99225 * 4 2 1 6 6 H 1.08000 * 120.00483 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00070 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99725 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00481 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.46845 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47365 * 119.99522 * 9 7 5 12 12 H 1.48498 * 109.46934 * 240.00038 * 9 7 5 13 13 C 1.50694 * 109.47451 * 120.00417 * 2 1 3 14 14 C 1.38241 * 120.00006 * 260.00190 * 13 2 1 15 15 C 1.38232 * 119.99949 * 179.97438 * 14 13 2 16 16 C 1.38237 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99984 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.46835 * 90.00091 * 17 16 15 19 19 C 1.34780 * 119.99566 * 180.02562 * 18 17 16 20 20 O 1.21280 * 120.00423 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99795 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18 23 23 H 1.08999 * 110.43445 * 305.70040 * 22 21 19 24 24 C 1.54627 * 110.49121 * 183.15800 * 22 21 19 25 25 C 1.54830 * 101.60561 * 266.08500 * 24 22 21 26 26 N 1.46765 * 105.48959 * 334.56176 * 25 24 22 27 27 C 1.34418 * 111.30467 * 17.04050 * 26 25 24 28 28 O 1.21279 * 124.94397 * 179.62824 * 27 26 25 29 29 C 1.38231 * 119.99816 * 0.27433 * 16 15 14 30 30 C 1.38236 * 120.00347 * 359.51242 * 29 16 15 31 31 H 1.09004 * 109.47130 * 59.99505 * 1 2 3 32 32 H 1.08994 * 109.46953 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47174 * 299.99639 * 1 2 3 34 34 H 0.96998 * 119.99394 * 265.00424 * 4 2 1 35 35 H 0.97003 * 119.99713 * 180.02562 * 8 7 5 36 36 H 1.07999 * 119.99717 * 359.97410 * 14 13 2 37 37 H 1.07998 * 120.00173 * 179.97438 * 15 14 13 38 38 H 1.09001 * 109.46980 * 329.99907 * 17 16 15 39 39 H 1.09002 * 109.47152 * 210.00007 * 17 16 15 40 40 H 0.96995 * 120.00423 * 359.97438 * 18 17 16 41 41 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 42 42 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 43 43 H 1.09004 * 110.96482 * 24.23863 * 24 22 21 44 44 H 1.08996 * 110.97051 * 147.99560 * 24 22 21 45 45 H 1.09003 * 110.21726 * 215.56700 * 25 24 22 46 46 H 1.08999 * 110.32992 * 93.61597 * 25 24 22 47 47 H 0.97008 * 124.34744 * 197.05896 * 26 25 24 48 48 H 1.08007 * 119.99753 * 179.72933 * 29 16 15 49 49 H 1.07998 * 120.00328 * 180.27416 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8925 1.0407 -2.4242 7 6 2.6113 -0.6616 -3.5093 8 7 2.9245 -1.9387 -3.4503 9 14 2.7903 0.2704 -5.1183 10 1 2.3762 1.6829 -4.9208 11 1 4.2072 0.2268 -5.5606 12 1 1.9292 -0.3574 -6.1524 13 6 2.0324 -0.7105 1.2303 14 6 2.4588 0.0193 2.3242 15 6 2.9191 -0.6324 3.4530 16 6 2.9526 -2.0139 3.4882 17 6 3.4550 -2.7244 4.7186 18 7 2.3356 -2.9726 5.6304 19 6 2.5489 -3.6001 6.8040 20 8 3.6673 -3.9596 7.1050 21 6 1.3972 -3.8560 7.7418 22 6 1.9073 -4.5771 8.9910 23 1 2.4514 -5.4800 8.7137 24 6 0.7320 -4.9221 9.9347 25 6 0.7319 -3.7039 10.8903 26 7 2.1062 -3.1892 10.8693 27 6 2.7875 -3.6591 9.8101 28 8 3.9403 -3.3871 9.5494 29 6 2.5311 -2.7435 2.3924 30 6 2.0665 -2.0920 1.2652 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 2.2490 -1.6316 -1.1527 35 1 3.2479 -2.3958 -4.2423 36 1 2.4322 1.0987 2.2969 37 1 3.2526 -0.0623 4.3075 38 1 4.1996 -2.1042 5.2177 39 1 3.9068 -3.6738 4.4310 40 1 1.4411 -2.6847 5.3899 41 1 0.9448 -2.9068 8.0290 42 1 0.6532 -4.4768 7.2426 43 1 -0.2055 -4.9870 9.3824 44 1 0.9270 -5.8460 10.4791 45 1 0.4616 -4.0164 11.8990 46 1 0.0385 -2.9425 10.5333 47 1 2.4756 -2.5874 11.5345 48 1 2.5613 -3.8229 2.4183 49 1 1.7330 -2.6621 0.4108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326467944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:50 Heat of formation + Delta-G solvation = -40.769834 kcal Electronic energy + Delta-G solvation = -28893.229387 eV Core-core repulsion = 24819.926173 eV Total energy + Delta-G solvation = -4073.303214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.98257 -39.68794 -38.95236 -36.64068 -35.96358 -34.46923 -33.23933 -32.32668 -30.72828 -30.45319 -29.33748 -28.32696 -26.79876 -25.30451 -23.85971 -22.58192 -22.27022 -21.66690 -20.95198 -20.10695 -19.69803 -17.89998 -17.50228 -17.27427 -16.44026 -16.19660 -15.91117 -15.49626 -15.24787 -14.82283 -14.71240 -14.36250 -14.06678 -14.01606 -13.77501 -13.39902 -13.37769 -13.19415 -13.04980 -13.02898 -12.95058 -12.70942 -12.31180 -12.15916 -11.94573 -11.76953 -11.51773 -11.41549 -11.22152 -10.91471 -10.86624 -10.62767 -10.29013 -10.07015 -9.98435 -9.81231 -9.69648 -9.45664 -9.12728 -8.99460 -8.63531 -8.30752 -7.01009 -5.79929 -3.08734 1.48310 1.69214 2.37686 2.57622 3.00421 3.11384 3.41750 3.47301 3.49594 3.92264 3.95278 4.10632 4.20677 4.48528 4.57102 4.59099 4.73578 4.85688 4.89602 5.00450 5.02259 5.09169 5.23406 5.28057 5.32948 5.34600 5.41496 5.55168 5.55664 5.70168 5.73390 5.78269 5.97198 6.01726 6.25136 6.29737 6.32758 6.35399 6.49063 6.49199 6.61330 6.67947 6.72129 6.78338 6.93790 7.15472 7.28091 7.40367 7.67860 8.03704 8.16537 8.38340 9.49826 10.05394 10.40575 11.42755 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028889 B = 0.001648 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.006433 B =16989.894136 C =17172.094323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.240 4.240 6 H 0.072 0.928 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.292 1.292 13 C -0.054 4.054 14 C -0.121 4.121 15 C -0.103 4.103 16 C -0.129 4.129 17 C 0.168 3.832 18 N -0.727 5.727 19 C 0.498 3.502 20 O -0.511 6.511 21 C -0.124 4.124 22 C -0.109 4.109 23 H 0.113 0.887 24 C -0.131 4.131 25 C 0.101 3.899 26 N -0.742 5.742 27 C 0.517 3.483 28 O -0.497 6.497 29 C -0.099 4.099 30 C -0.106 4.106 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.400 0.600 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.408 0.592 48 H 0.119 0.881 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -4.425 29.796 31.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.371 4.371 6 H 0.090 0.910 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.055 4.055 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.129 4.129 17 C 0.045 3.955 18 N -0.380 5.380 19 C 0.282 3.718 20 O -0.385 6.385 21 C -0.165 4.165 22 C -0.132 4.132 23 H 0.131 0.869 24 C -0.169 4.169 25 C -0.024 4.024 26 N -0.400 5.400 27 C 0.301 3.699 28 O -0.369 6.369 29 C -0.118 4.118 30 C -0.124 4.124 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.112 0.888 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.247 0.753 48 H 0.137 0.863 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.236 -4.507 29.619 31.072 hybrid contribution -0.202 0.598 -0.828 1.041 sum -8.438 -3.909 28.791 30.256 Atomic orbital electron populations 1.22414 0.98262 1.01112 1.00116 1.19250 0.92134 0.95014 0.84235 0.92643 1.42530 1.78199 1.10723 1.04917 1.19288 1.36646 0.94017 0.87104 0.91009 1.24748 1.02015 0.96014 0.98129 1.69670 1.50774 1.08689 1.28852 0.86113 0.77335 0.78793 0.83914 1.20530 1.21856 1.21867 1.20525 0.95372 0.94063 0.95574 1.21012 1.00061 0.99766 0.93167 1.20928 0.99632 0.93558 0.98022 1.19669 1.03894 0.93831 0.95522 1.20113 0.88419 0.99846 0.87116 1.46117 1.11976 1.60790 1.19155 1.20575 0.90638 0.78510 0.82028 1.90849 1.24010 1.49617 1.73983 1.21541 0.97761 1.02756 0.94436 1.21720 0.96814 1.00254 0.94379 0.86862 1.22777 0.98883 0.98244 0.97015 1.22097 0.83497 0.96033 1.00799 1.46293 1.13920 1.51084 1.28688 1.20740 0.86985 0.80991 0.81173 1.90840 1.16076 1.59409 1.70551 1.21016 0.98315 0.99476 0.92962 1.21086 0.99180 0.94422 0.97736 0.92404 0.93334 0.94358 0.77990 0.93506 0.86174 0.86556 0.90989 0.90862 0.76608 0.88763 0.87548 0.88777 0.89536 0.90337 0.91112 0.75340 0.86340 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.47 37.16 0.35 -2.44 16 2 C 0.20 3.99 3.09 -69.08 -0.21 3.78 16 3 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 4 N -0.72 -17.79 5.07 -54.55 -0.28 -18.07 16 5 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 9 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C -0.05 -0.93 4.95 -104.62 -0.52 -1.45 16 14 C -0.12 -1.79 9.67 -39.58 -0.38 -2.17 16 15 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 16 C -0.13 -1.65 5.25 -104.62 -0.55 -2.20 16 17 C 0.17 2.00 5.80 -5.19 -0.03 1.97 16 18 N -0.73 -7.21 5.55 -61.47 -0.34 -7.55 16 19 C 0.50 5.47 7.62 -10.98 -0.08 5.39 16 20 O -0.51 -8.07 13.83 -15.98 -0.22 -8.29 16 21 C -0.12 -0.78 5.11 -27.88 -0.14 -0.93 16 22 C -0.11 -0.77 2.54 -90.63 -0.23 -1.00 16 23 H 0.11 0.95 7.96 -51.93 -0.41 0.54 16 24 C -0.13 -0.38 6.74 -24.91 -0.17 -0.55 16 25 C 0.10 0.29 7.79 -2.93 -0.02 0.26 16 26 N -0.74 -4.68 6.24 -59.01 -0.37 -5.05 16 27 C 0.52 5.37 7.42 -10.86 -0.08 5.29 16 28 O -0.50 -7.95 16.03 -15.98 -0.26 -8.21 16 29 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 30 C -0.11 -1.76 9.06 -39.58 -0.36 -2.12 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.38 10.01 6.07 -40.82 -0.25 9.76 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 36 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.40 3.07 8.46 -40.82 -0.35 2.72 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.37 8.13 -51.93 -0.42 -0.05 16 43 H 0.09 0.09 7.90 -51.93 -0.41 -0.32 16 44 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 46 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 47 H 0.41 2.15 8.96 -40.82 -0.37 1.79 16 48 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 49 H 0.13 2.28 6.92 -52.49 -0.36 1.92 16 LS Contribution 405.77 15.07 6.11 6.11 Total: -1.00 -36.87 405.77 -10.68 -47.55 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -7.59 Total: 10.28 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.44 Total: -6.83 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.26 Total: -57.84 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.48 Total: -16.49 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.87 -10.68 -47.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326467944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.778 kcal (2) G-P(sol) polarization free energy of solvation -36.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds