Wall clock time and date at job start Wed Apr 1 2020 03:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47756 * 2 1 4 4 N 1.46499 * 109.46995 * 120.00513 * 2 1 3 5 5 C 1.36939 * 119.99947 * 274.99904 * 4 2 1 6 6 H 1.07995 * 119.99608 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99891 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99800 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00219 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47468 * 89.99951 * 9 7 5 11 11 H 1.48506 * 109.47051 * 209.99877 * 9 7 5 12 12 H 1.48502 * 109.47012 * 329.99888 * 9 7 5 13 13 C 1.50702 * 109.46908 * 240.00198 * 2 1 3 14 14 C 1.38235 * 119.99942 * 100.00696 * 13 2 1 15 15 C 1.38234 * 119.99898 * 180.02562 * 14 13 2 16 16 C 1.38237 * 120.00399 * 359.97438 * 15 14 13 17 17 C 1.50692 * 120.00360 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47321 * 90.00299 * 17 16 15 19 19 C 1.34777 * 120.00215 * 180.02562 * 18 17 16 20 20 O 1.21282 * 119.99709 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00101 * 179.97438 * 19 18 17 22 22 H 1.09003 * 109.60366 * 59.67346 * 21 19 18 23 23 C 1.53342 * 109.60367 * 179.97438 * 21 19 18 24 24 C 1.53064 * 108.42647 * 187.28393 * 23 21 19 25 25 C 1.50177 * 109.89517 * 311.10264 * 24 23 21 26 26 O 1.21283 * 118.24537 * 197.57861 * 25 24 23 27 27 N 1.33356 * 123.50508 * 17.86251 * 25 24 23 28 28 C 1.45768 * 124.09246 * 357.20044 * 27 25 24 29 29 C 1.38236 * 119.99712 * 0.25774 * 16 15 14 30 30 C 1.38237 * 120.00228 * 279.97975 * 13 2 1 31 31 H 1.08996 * 109.47218 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47051 * 300.00013 * 1 2 3 33 33 H 1.09006 * 109.46867 * 59.99661 * 1 2 3 34 34 H 0.97000 * 119.99976 * 94.99864 * 4 2 1 35 35 H 0.97005 * 119.99894 * 180.02562 * 8 7 5 36 36 H 1.07995 * 120.00221 * 359.96595 * 14 13 2 37 37 H 1.08004 * 119.99829 * 179.97438 * 15 14 13 38 38 H 1.09002 * 109.47428 * 330.00066 * 17 16 15 39 39 H 1.09004 * 109.47166 * 209.99896 * 17 16 15 40 40 H 0.97006 * 119.99874 * 359.97438 * 18 17 16 41 41 H 1.09005 * 109.67375 * 67.55656 * 23 21 19 42 42 H 1.08995 * 109.70713 * 307.03985 * 23 21 19 43 43 H 1.09000 * 109.40587 * 190.96911 * 24 23 21 44 44 H 1.09005 * 109.32835 * 71.19019 * 24 23 21 45 45 H 0.97000 * 117.94182 * 177.47749 * 27 25 24 46 46 H 1.09000 * 109.51361 * 259.18305 * 28 27 25 47 47 H 1.08999 * 108.99135 * 139.65656 * 28 27 25 48 48 H 1.08001 * 120.00273 * 179.72334 * 29 16 15 49 49 H 1.08004 * 119.99899 * 0.02562 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0077 2.3758 6 1 1.8927 1.0403 2.4242 7 6 2.6113 -0.6623 3.5092 8 7 2.7375 -0.0056 4.6429 9 14 3.0555 -2.4747 3.4252 10 1 4.4883 -2.6170 3.0620 11 1 2.8153 -3.1051 4.7483 12 1 2.2159 -3.1431 2.3987 13 6 2.0323 -0.7104 -1.2305 14 6 2.4588 0.0195 -2.3243 15 6 2.9191 -0.6321 -3.4532 16 6 2.9533 -2.0136 -3.4882 17 6 3.4545 -2.7240 -4.7191 18 7 4.8998 -2.9354 -4.6065 19 6 5.5693 -3.5563 -5.5979 20 8 4.9752 -3.9403 -6.5830 21 6 7.0561 -3.7732 -5.4823 22 1 7.2703 -4.3749 -4.5990 23 6 7.5693 -4.4961 -6.7334 24 6 9.0381 -4.8649 -6.5108 25 6 9.7951 -3.6684 -6.0101 26 8 11.0054 -3.6811 -6.0881 27 7 9.2081 -2.5951 -5.4793 28 6 7.7647 -2.4225 -5.3719 29 6 2.5223 -2.7436 -2.3963 30 6 2.0671 -2.0919 -1.2653 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6319 1.1525 35 1 3.0608 -0.4630 5.4349 36 1 2.4316 1.0988 -2.2972 37 1 3.2519 -0.0619 -4.3079 38 1 3.2435 -2.1175 -5.5999 39 1 2.9526 -3.6871 -4.8124 40 1 5.3750 -2.6279 -3.8187 41 1 7.4832 -3.8385 -7.5985 42 1 6.9851 -5.4009 -6.9008 43 1 9.4737 -5.2011 -7.4517 44 1 9.1013 -5.6671 -5.7756 45 1 9.7773 -1.8832 -5.1474 46 1 7.4161 -1.7667 -6.1697 47 1 7.5321 -1.9715 -4.4073 48 1 2.5449 -3.8230 -2.4253 49 1 1.7339 -2.6621 -0.4108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326470144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:34 Heat of formation + Delta-G solvation = -45.472476 kcal Electronic energy + Delta-G solvation = -29177.794834 eV Core-core repulsion = 25104.287698 eV Total energy + Delta-G solvation = -4073.507136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.12493 -39.98816 -39.36105 -36.76001 -36.21317 -34.81842 -33.49607 -32.48067 -31.20854 -30.91656 -30.13035 -28.84776 -26.26933 -25.24592 -23.94258 -23.44733 -22.81370 -21.68438 -21.11676 -19.94582 -19.63923 -18.33394 -18.03032 -17.17199 -16.80077 -16.27624 -15.98572 -15.86000 -15.46661 -15.27240 -14.95526 -14.66359 -14.50266 -14.24922 -14.17656 -13.86098 -13.77856 -13.43182 -13.28584 -12.90465 -12.72248 -12.44536 -12.43820 -12.33538 -12.27830 -11.91725 -11.74594 -11.56375 -11.47446 -11.17009 -10.98292 -10.75739 -10.45852 -10.32945 -10.19780 -10.14286 -9.66903 -9.62733 -9.47398 -9.08190 -8.88214 -8.55421 -7.38360 -5.85379 -3.21556 1.22783 1.44613 2.12299 2.20740 2.70978 2.87710 3.28538 3.31295 3.38100 3.81587 3.93170 4.05262 4.08323 4.19693 4.47251 4.50429 4.65727 4.70718 4.76519 4.77916 4.88976 4.98650 5.05209 5.08584 5.15807 5.27450 5.34060 5.41090 5.43915 5.47256 5.53344 5.61154 5.71224 5.83235 5.98127 6.02688 6.10452 6.13768 6.26414 6.26906 6.42554 6.50469 6.53525 6.78686 6.80007 6.93279 7.03164 7.07865 7.74169 7.76137 7.89719 8.33217 9.10592 9.82890 10.01972 11.32716 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.002216 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.800924 B =12631.181069 C =13985.422223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.209 3.791 3 H 0.066 0.934 4 N -0.745 5.745 5 C -0.245 4.245 6 H 0.092 0.908 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.278 1.278 13 C -0.054 4.054 14 C -0.118 4.118 15 C -0.099 4.099 16 C -0.131 4.131 17 C 0.166 3.834 18 N -0.722 5.722 19 C 0.522 3.478 20 O -0.534 6.534 21 C -0.127 4.127 22 H 0.110 0.890 23 C -0.104 4.104 24 C -0.136 4.136 25 C 0.519 3.481 26 O -0.556 6.556 27 N -0.719 5.719 28 C 0.120 3.880 29 C -0.098 4.098 30 C -0.114 4.114 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.404 0.596 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.404 0.596 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.119 0.881 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 -6.484 -23.612 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.100 3.900 3 H 0.084 0.916 4 N -0.389 5.389 5 C -0.375 4.375 6 H 0.110 0.890 7 C -0.190 4.190 8 N -0.579 5.579 9 Si 0.713 3.287 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.204 1.204 13 C -0.055 4.055 14 C -0.136 4.136 15 C -0.118 4.118 16 C -0.132 4.132 17 C 0.044 3.956 18 N -0.374 5.374 19 C 0.307 3.693 20 O -0.410 6.410 21 C -0.149 4.149 22 H 0.128 0.872 23 C -0.142 4.142 24 C -0.176 4.176 25 C 0.306 3.694 26 O -0.434 6.434 27 N -0.371 5.371 28 C -0.005 4.005 29 C -0.117 4.117 30 C -0.133 4.133 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.195 0.805 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.239 0.761 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.240 0.760 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.137 0.863 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.712 -6.777 -24.254 25.822 hybrid contribution 0.549 -0.829 0.871 1.321 sum 6.261 -7.606 -23.383 25.373 Atomic orbital electron populations 1.22394 0.97665 1.01210 1.00754 1.19231 0.92356 0.95285 0.83165 0.91650 1.42863 1.79888 1.09361 1.06792 1.19057 1.37225 0.95645 0.85526 0.89044 1.24659 1.01304 0.97450 0.95553 1.69695 1.52334 1.35570 1.00286 0.86593 0.78462 0.86794 0.76894 1.21027 1.21621 1.20435 1.20565 0.95127 0.93951 0.95875 1.21052 0.99560 1.00044 0.92973 1.20963 0.99318 0.93446 0.98045 1.19651 1.04030 0.93884 0.95600 1.20169 0.79684 1.00156 0.95631 1.46217 1.09305 1.59842 1.22050 1.20220 0.88687 0.77597 0.82786 1.90736 1.69718 1.49863 1.30651 1.21682 0.92343 0.98417 1.02442 0.87210 1.21504 0.94171 1.02112 0.96381 1.21702 0.95344 0.96249 1.04304 1.20267 0.88147 0.84279 0.76708 1.90784 1.14837 1.81263 1.56564 1.45417 1.07666 1.21417 1.62624 1.21310 0.80026 0.95907 1.03283 1.21012 0.98372 0.99494 0.92823 1.21058 0.99848 0.94489 0.97872 0.93427 0.91847 0.93960 0.80463 0.92965 0.85773 0.86247 0.90621 0.90678 0.76115 0.90271 0.89209 0.87527 0.87865 0.76023 0.90698 0.89619 0.86291 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.47 37.16 0.35 -2.28 16 2 C 0.21 3.73 3.09 -69.08 -0.21 3.52 16 3 H 0.07 1.19 7.94 -51.93 -0.41 0.78 16 4 N -0.75 -16.60 4.87 -54.55 -0.27 -16.86 16 5 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -28.43 13.97 55.49 0.78 -27.66 16 9 Si 0.88 21.31 27.74 -169.99 -4.71 16.60 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 13 C -0.05 -0.80 4.95 -104.62 -0.52 -1.32 16 14 C -0.12 -1.45 9.67 -39.58 -0.38 -1.83 16 15 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 16 C -0.13 -1.29 5.25 -104.63 -0.55 -1.84 16 17 C 0.17 1.39 5.80 -5.20 -0.03 1.36 16 18 N -0.72 -5.09 5.46 -61.47 -0.34 -5.42 16 19 C 0.52 4.10 7.13 -10.99 -0.08 4.02 16 20 O -0.53 -6.16 15.90 5.56 0.09 -6.07 16 21 C -0.13 -0.68 2.60 -91.63 -0.24 -0.92 16 22 H 0.11 0.48 8.12 -51.93 -0.42 0.05 16 23 C -0.10 -0.60 4.71 -26.52 -0.12 -0.72 16 24 C -0.14 -0.80 6.03 -28.10 -0.17 -0.97 16 25 C 0.52 4.47 7.71 -11.87 -0.09 4.38 16 26 O -0.56 -7.27 17.78 5.55 0.10 -7.17 16 27 N -0.72 -4.47 5.45 -61.37 -0.33 -4.80 16 28 C 0.12 0.54 6.33 -4.47 -0.03 0.51 16 29 C -0.10 -1.12 9.70 -39.58 -0.38 -1.51 16 30 C -0.11 -1.62 9.06 -39.58 -0.36 -1.98 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.36 7.90 3.93 -40.82 -0.16 7.74 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.12 1.36 8.04 -52.49 -0.42 0.93 16 37 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 40 H 0.40 2.30 8.15 -40.82 -0.33 1.96 16 41 H 0.08 0.51 8.13 -51.93 -0.42 0.08 16 42 H 0.09 0.55 7.90 -51.93 -0.41 0.14 16 43 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.40 2.28 8.80 -40.82 -0.36 1.92 16 46 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 47 H 0.09 0.26 7.89 -51.93 -0.41 -0.15 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 49 H 0.12 1.87 6.92 -52.48 -0.36 1.51 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -34.86 402.31 -9.60 -44.46 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.52 Total: 8.50 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.45 Total: -7.63 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.16 Total: -54.75 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.19 Total: -13.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.86 -9.60 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326470144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.010 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds