Wall clock time and date at job start Wed Apr 1 2020 03:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09010 * 109.46758 * 2 1 4 4 N 1.46500 * 109.47111 * 240.00105 * 2 1 3 5 5 C 1.36940 * 119.99804 * 84.99886 * 4 2 1 6 6 H 1.07997 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99907 * 180.02562 * 5 4 2 8 8 N 1.31627 * 120.00000 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00359 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46705 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47463 * 119.99550 * 9 7 5 12 12 H 1.48497 * 109.47159 * 240.00027 * 9 7 5 13 13 C 1.50693 * 109.47614 * 119.99828 * 2 1 3 14 14 C 1.38237 * 120.00224 * 260.00655 * 13 2 1 15 15 C 1.38234 * 119.99969 * 179.97438 * 14 13 2 16 16 C 1.38237 * 120.00399 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00360 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47321 * 90.00299 * 17 16 15 19 19 C 1.34777 * 120.00215 * 180.02562 * 18 17 16 20 20 O 1.21282 * 119.99709 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00101 * 179.97438 * 19 18 17 22 22 H 1.09003 * 109.60366 * 59.67346 * 21 19 18 23 23 C 1.53342 * 109.60367 * 179.97438 * 21 19 18 24 24 C 1.53064 * 108.42647 * 187.28393 * 23 21 19 25 25 C 1.50177 * 109.89517 * 311.10264 * 24 23 21 26 26 O 1.21283 * 118.24537 * 197.57861 * 25 24 23 27 27 N 1.33356 * 123.50508 * 17.86251 * 25 24 23 28 28 C 1.45768 * 124.09246 * 357.20044 * 27 25 24 29 29 C 1.38236 * 119.99712 * 0.25774 * 16 15 14 30 30 C 1.38241 * 120.00018 * 359.49133 * 29 16 15 31 31 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47303 * 299.99611 * 1 2 3 33 33 H 1.08998 * 109.47733 * 60.00163 * 1 2 3 34 34 H 0.96994 * 119.99953 * 264.99343 * 4 2 1 35 35 H 0.97001 * 120.00107 * 180.02562 * 8 7 5 36 36 H 1.07995 * 119.99990 * 359.97438 * 14 13 2 37 37 H 1.08004 * 119.99829 * 179.97438 * 15 14 13 38 38 H 1.09002 * 109.47428 * 330.00066 * 17 16 15 39 39 H 1.09004 * 109.47166 * 209.99896 * 17 16 15 40 40 H 0.97006 * 119.99874 * 359.97438 * 18 17 16 41 41 H 1.09005 * 109.67375 * 67.55656 * 23 21 19 42 42 H 1.08995 * 109.70713 * 307.03985 * 23 21 19 43 43 H 1.09000 * 109.40587 * 190.96911 * 24 23 21 44 44 H 1.09005 * 109.32835 * 71.19019 * 24 23 21 45 45 H 0.97000 * 117.94182 * 177.47749 * 27 25 24 46 46 H 1.09000 * 109.51361 * 259.18305 * 28 27 25 47 47 H 1.08999 * 108.99135 * 139.65656 * 28 27 25 48 48 H 1.08001 * 120.00273 * 179.72334 * 29 16 15 49 49 H 1.07997 * 120.00403 * 180.25109 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8917 1.0404 -2.4244 7 6 2.6112 -0.6618 -3.5093 8 7 2.9243 -1.9390 -3.4502 9 14 2.7903 0.2702 -5.1182 10 1 2.3763 1.6826 -4.9207 11 1 4.2071 0.2264 -5.5607 12 1 1.9291 -0.3576 -6.1524 13 6 2.0323 -0.7103 1.2304 14 6 2.4587 0.0195 2.3242 15 6 2.9191 -0.6321 3.4531 16 6 2.9537 -2.0136 3.4880 17 6 3.4561 -2.7240 4.7183 18 7 2.3365 -2.9734 5.6296 19 6 2.5497 -3.6010 6.8032 20 8 3.6684 -3.9597 7.1045 21 6 1.3981 -3.8571 7.7408 22 1 0.6500 -4.4731 7.2417 23 6 1.9061 -4.5801 8.9941 24 6 0.6977 -4.9885 9.8402 25 6 -0.2263 -3.8170 10.0106 26 8 -1.0494 -3.8598 10.9003 27 7 -0.1937 -2.7345 9.2324 28 6 0.7741 -2.5262 8.1625 29 6 2.5328 -2.7434 2.3920 30 6 2.0676 -2.0918 1.2650 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 2.2490 -1.6317 -1.1526 35 1 3.2476 -2.3962 -4.2423 36 1 2.4321 1.0988 2.2969 37 1 3.2525 -0.0619 4.3075 38 1 4.1999 -2.1033 5.2180 39 1 3.9087 -3.6730 4.4306 40 1 1.4418 -2.6862 5.3888 41 1 2.5473 -3.9118 9.5688 42 1 2.4678 -5.4680 8.7039 43 1 1.0385 -5.3263 10.8190 44 1 0.1662 -5.7996 9.3423 45 1 -0.8529 -2.0408 9.3909 46 1 1.5592 -1.8535 8.5077 47 1 0.2669 -2.0792 7.3075 48 1 2.5640 -3.8226 2.4175 49 1 1.7350 -2.6620 0.4102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326470149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:46 Heat of formation + Delta-G solvation = -49.677918 kcal Electronic energy + Delta-G solvation = -28940.521552 eV Core-core repulsion = 24866.832054 eV Total energy + Delta-G solvation = -4073.689498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.11824 -39.93375 -39.25005 -36.74759 -36.07010 -34.71044 -33.50391 -32.46470 -31.09824 -30.77548 -29.91607 -28.37269 -26.18877 -25.24619 -24.04770 -23.51932 -22.65566 -21.73621 -21.09306 -19.87759 -19.60936 -18.31085 -17.50966 -17.15762 -16.77578 -16.22185 -15.97212 -15.79465 -15.45752 -15.14110 -14.86148 -14.65472 -14.47004 -14.20156 -14.14600 -13.80396 -13.48466 -13.40955 -13.16378 -13.08955 -12.63081 -12.43794 -12.38536 -12.26255 -12.01019 -11.79768 -11.61457 -11.56280 -11.29424 -10.98926 -10.90483 -10.69844 -10.36583 -10.27940 -10.20709 -10.03540 -9.74472 -9.64867 -9.41766 -9.04151 -8.73377 -8.41298 -7.05843 -5.84355 -3.13366 1.36326 1.59490 2.14699 2.19892 2.71296 2.90605 3.38534 3.44248 3.46464 3.92825 3.93204 4.07183 4.09205 4.20094 4.53008 4.56583 4.66048 4.73253 4.76600 4.87939 4.89484 5.08391 5.12363 5.21981 5.27794 5.31063 5.44621 5.49983 5.51505 5.62220 5.64380 5.69920 5.87728 5.94345 6.03737 6.16452 6.23094 6.24058 6.27221 6.42337 6.54014 6.62787 6.68304 6.77655 6.87773 7.08158 7.11333 7.19130 7.63718 7.71991 7.80698 8.33844 9.45430 10.00413 10.35417 11.38246 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.001717 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.211785 B =16303.857178 C =16792.646028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.240 4.240 6 H 0.072 0.928 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.291 1.291 13 C -0.052 4.052 14 C -0.122 4.122 15 C -0.102 4.102 16 C -0.132 4.132 17 C 0.166 3.834 18 N -0.721 5.721 19 C 0.521 3.479 20 O -0.533 6.533 21 C -0.126 4.126 22 H 0.110 0.890 23 C -0.104 4.104 24 C -0.136 4.136 25 C 0.519 3.481 26 O -0.557 6.557 27 N -0.719 5.719 28 C 0.120 3.880 29 C -0.098 4.098 30 C -0.106 4.106 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.403 0.597 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.403 0.597 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.119 0.881 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 -2.532 24.347 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.371 4.371 6 H 0.090 0.910 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.218 1.218 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.133 4.133 17 C 0.043 3.957 18 N -0.373 5.373 19 C 0.306 3.694 20 O -0.409 6.409 21 C -0.148 4.148 22 H 0.128 0.872 23 C -0.142 4.142 24 C -0.176 4.176 25 C 0.306 3.694 26 O -0.435 6.435 27 N -0.371 5.371 28 C -0.005 4.005 29 C -0.117 4.117 30 C -0.124 4.124 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.237 0.763 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.239 0.761 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.137 0.863 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.458 -2.875 24.821 25.225 hybrid contribution -0.412 0.616 -1.341 1.532 sum -3.870 -2.259 23.480 23.904 Atomic orbital electron populations 1.22421 0.98233 1.01130 1.00166 1.19257 0.92163 0.95034 0.84224 0.92605 1.42528 1.78211 1.10709 1.04914 1.19283 1.36725 0.94039 0.87089 0.90992 1.24751 1.01956 0.96011 0.98143 1.69667 1.50718 1.08682 1.28896 0.86112 0.77351 0.78802 0.83882 1.20516 1.21834 1.21844 1.20551 0.95102 0.94060 0.95589 1.21024 1.00001 0.99831 0.93156 1.20918 0.99626 0.93470 0.98052 1.19623 1.04369 0.93834 0.95479 1.20179 0.88192 1.00071 0.87209 1.46214 1.12374 1.59718 1.18986 1.20213 0.89797 0.77688 0.81751 1.90743 1.24281 1.50725 1.75117 1.21675 0.97593 0.98405 0.97141 0.87247 1.21507 0.96848 1.02029 0.93839 1.21701 0.95915 0.96451 1.03514 1.20279 0.84499 0.83970 0.80627 1.90783 1.39117 1.80809 1.32797 1.45420 1.35119 1.21818 1.34785 1.21310 0.92542 0.96011 0.90638 1.21023 0.98214 0.99492 0.92970 1.21105 0.99076 0.94447 0.97774 0.93334 0.94349 0.92362 0.77999 0.93478 0.86110 0.86481 0.90683 0.90615 0.76272 0.90276 0.89162 0.87533 0.87860 0.76101 0.90702 0.89677 0.86321 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.47 37.15 0.35 -2.34 16 2 C 0.20 3.81 3.09 -69.09 -0.21 3.60 16 3 H 0.06 1.06 7.94 -51.92 -0.41 0.65 16 4 N -0.72 -17.24 5.07 -54.56 -0.28 -17.52 16 5 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 9 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 C -0.05 -0.83 4.95 -104.62 -0.52 -1.34 16 14 C -0.12 -1.61 9.67 -39.58 -0.38 -1.99 16 15 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 16 C -0.13 -1.43 5.25 -104.63 -0.55 -1.98 16 17 C 0.17 1.52 5.80 -5.20 -0.03 1.49 16 18 N -0.72 -5.09 5.46 -61.47 -0.34 -5.42 16 19 C 0.52 4.09 7.13 -10.99 -0.08 4.02 16 20 O -0.53 -6.31 15.90 5.56 0.09 -6.23 16 21 C -0.13 -0.63 2.60 -91.63 -0.24 -0.87 16 22 H 0.11 0.41 8.12 -51.93 -0.42 -0.01 16 23 C -0.10 -0.58 4.71 -26.52 -0.12 -0.70 16 24 C -0.14 -0.75 6.03 -28.10 -0.17 -0.92 16 25 C 0.52 4.19 7.71 -11.87 -0.09 4.10 16 26 O -0.56 -6.95 17.78 5.55 0.10 -6.85 16 27 N -0.72 -3.99 5.45 -61.37 -0.33 -4.33 16 28 C 0.12 0.47 6.33 -4.47 -0.03 0.44 16 29 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 30 C -0.11 -1.63 9.06 -39.58 -0.36 -1.99 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.38 9.70 6.06 -40.82 -0.25 9.45 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.12 1.43 8.04 -52.49 -0.42 1.01 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 38 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.40 2.10 8.15 -40.82 -0.33 1.76 16 41 H 0.08 0.50 8.13 -51.93 -0.42 0.07 16 42 H 0.09 0.54 7.90 -51.93 -0.41 0.13 16 43 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.40 1.95 8.80 -40.82 -0.36 1.59 16 46 H 0.07 0.31 8.11 -51.93 -0.42 -0.11 16 47 H 0.08 0.18 7.89 -51.93 -0.41 -0.23 16 48 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 49 H 0.13 2.17 6.91 -52.49 -0.36 1.80 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -34.28 405.42 -9.96 -44.24 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.57 Total: 8.47 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.44 Total: -8.65 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.22 Total: -53.92 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.19 Total: -13.08 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.28 -9.96 -44.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326470149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.438 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds