Wall clock time and date at job start Wed Apr 1 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09010 * 109.46758 * 2 1 4 4 N 1.46500 * 109.47111 * 240.00105 * 2 1 3 5 5 C 1.36940 * 119.99804 * 84.99886 * 4 2 1 6 6 H 1.07997 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99907 * 180.02562 * 5 4 2 8 8 N 1.31627 * 120.00000 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00359 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46705 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47463 * 119.99550 * 9 7 5 12 12 H 1.48497 * 109.47159 * 240.00027 * 9 7 5 13 13 C 1.50693 * 109.47614 * 119.99828 * 2 1 3 14 14 C 1.38237 * 120.00224 * 260.00655 * 13 2 1 15 15 C 1.38234 * 119.99969 * 179.97438 * 14 13 2 16 16 C 1.38237 * 120.00399 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00360 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47321 * 90.00299 * 17 16 15 19 19 C 1.34777 * 120.00215 * 180.02562 * 18 17 16 20 20 O 1.21282 * 119.99709 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00101 * 179.97438 * 19 18 17 22 22 H 1.09003 * 109.60366 * 59.67346 * 21 19 18 23 23 C 1.53342 * 109.60367 * 179.97438 * 21 19 18 24 24 C 1.53064 * 108.42647 * 187.28393 * 23 21 19 25 25 C 1.50177 * 109.89517 * 311.10264 * 24 23 21 26 26 O 1.21283 * 118.24537 * 197.57861 * 25 24 23 27 27 N 1.33356 * 123.50508 * 17.86251 * 25 24 23 28 28 C 1.45768 * 124.09246 * 357.20044 * 27 25 24 29 29 C 1.38236 * 119.99712 * 0.25774 * 16 15 14 30 30 C 1.38241 * 120.00018 * 359.49133 * 29 16 15 31 31 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47303 * 299.99611 * 1 2 3 33 33 H 1.08998 * 109.47733 * 60.00163 * 1 2 3 34 34 H 0.96994 * 119.99953 * 264.99343 * 4 2 1 35 35 H 0.97001 * 120.00107 * 180.02562 * 8 7 5 36 36 H 1.07995 * 119.99990 * 359.97438 * 14 13 2 37 37 H 1.08004 * 119.99829 * 179.97438 * 15 14 13 38 38 H 1.09002 * 109.47428 * 330.00066 * 17 16 15 39 39 H 1.09004 * 109.47166 * 209.99896 * 17 16 15 40 40 H 0.97006 * 119.99874 * 359.97438 * 18 17 16 41 41 H 1.09005 * 109.67375 * 67.55656 * 23 21 19 42 42 H 1.08995 * 109.70713 * 307.03985 * 23 21 19 43 43 H 1.09000 * 109.40587 * 190.96911 * 24 23 21 44 44 H 1.09005 * 109.32835 * 71.19019 * 24 23 21 45 45 H 0.97000 * 117.94182 * 177.47749 * 27 25 24 46 46 H 1.09000 * 109.51361 * 259.18305 * 28 27 25 47 47 H 1.08999 * 108.99135 * 139.65656 * 28 27 25 48 48 H 1.08001 * 120.00273 * 179.72334 * 29 16 15 49 49 H 1.07997 * 120.00403 * 180.25109 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8917 1.0404 -2.4244 7 6 2.6112 -0.6618 -3.5093 8 7 2.9243 -1.9390 -3.4502 9 14 2.7903 0.2702 -5.1182 10 1 2.3763 1.6826 -4.9207 11 1 4.2071 0.2264 -5.5607 12 1 1.9291 -0.3576 -6.1524 13 6 2.0323 -0.7103 1.2304 14 6 2.4587 0.0195 2.3242 15 6 2.9191 -0.6321 3.4531 16 6 2.9537 -2.0136 3.4880 17 6 3.4561 -2.7240 4.7183 18 7 2.3365 -2.9734 5.6296 19 6 2.5497 -3.6010 6.8032 20 8 3.6684 -3.9597 7.1045 21 6 1.3981 -3.8571 7.7408 22 1 0.6500 -4.4731 7.2417 23 6 1.9061 -4.5801 8.9941 24 6 0.6977 -4.9885 9.8402 25 6 -0.2263 -3.8170 10.0106 26 8 -1.0494 -3.8598 10.9003 27 7 -0.1937 -2.7345 9.2324 28 6 0.7741 -2.5262 8.1625 29 6 2.5328 -2.7434 2.3920 30 6 2.0676 -2.0918 1.2650 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 2.2490 -1.6317 -1.1526 35 1 3.2476 -2.3962 -4.2423 36 1 2.4321 1.0988 2.2969 37 1 3.2525 -0.0619 4.3075 38 1 4.1999 -2.1033 5.2180 39 1 3.9087 -3.6730 4.4306 40 1 1.4418 -2.6862 5.3888 41 1 2.5473 -3.9118 9.5688 42 1 2.4678 -5.4680 8.7039 43 1 1.0385 -5.3263 10.8190 44 1 0.1662 -5.7996 9.3423 45 1 -0.8529 -2.0408 9.3909 46 1 1.5592 -1.8535 8.5077 47 1 0.2669 -2.0792 7.3075 48 1 2.5640 -3.8226 2.4175 49 1 1.7350 -2.6620 0.4102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326470149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:44 Heat of formation + Delta-G solvation = -73.855758 kcal Electronic energy + Delta-G solvation = -28941.569982 eV Core-core repulsion = 24866.832054 eV Total energy + Delta-G solvation = -4074.737927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.69077 -40.74470 -40.17643 -37.54445 -37.20026 -35.77261 -34.11625 -33.97863 -32.12012 -31.77553 -30.88802 -29.88589 -27.12755 -25.87913 -25.63776 -24.23917 -23.70178 -22.88502 -21.69994 -21.08339 -20.15973 -19.38646 -18.86044 -17.76650 -17.49643 -17.08865 -16.89550 -16.64066 -16.34050 -16.25714 -15.89764 -15.72193 -15.14976 -15.09908 -15.02226 -14.77340 -14.68267 -14.46613 -14.30697 -14.15040 -13.82205 -13.48027 -13.40623 -12.99281 -12.94766 -12.80913 -12.79019 -12.69575 -12.46786 -12.23439 -12.09149 -11.99759 -11.97853 -11.58905 -11.50695 -11.05237 -10.95940 -10.84485 -10.16208 -10.08667 -9.75251 -9.50551 -9.01764 -7.94453 -5.22481 0.34708 0.56956 1.47679 1.47761 1.55245 1.57696 1.60259 2.14951 2.34107 2.56098 2.95057 3.40420 3.51260 3.55672 3.68956 3.70714 3.76456 3.90621 4.02562 4.06473 4.19834 4.24951 4.27580 4.39362 4.40623 4.55228 4.57494 4.63270 4.72599 4.78009 4.79332 4.84154 4.88708 5.02503 5.02986 5.10237 5.15453 5.18902 5.25487 5.39286 5.44793 5.51207 5.59407 5.67141 5.79387 5.87691 6.13872 6.26506 6.28376 6.54749 7.16899 7.22214 7.34447 8.09904 8.33107 9.29256 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.001717 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.211785 B =16303.857178 C =16792.646028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.197 3.803 3 H 0.053 0.947 4 N -0.735 5.735 5 C -0.236 4.236 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.970 3.030 10 H -0.265 1.265 11 H -0.296 1.296 12 H -0.295 1.295 13 C -0.075 4.075 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.114 4.114 17 C 0.171 3.829 18 N -0.710 5.710 19 C 0.526 3.474 20 O -0.574 6.574 21 C -0.119 4.119 22 H 0.129 0.871 23 C -0.100 4.100 24 C -0.129 4.129 25 C 0.514 3.486 26 O -0.609 6.609 27 N -0.709 5.709 28 C 0.120 3.880 29 C -0.099 4.099 30 C -0.125 4.125 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.415 0.585 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.407 0.593 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.131 0.869 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 -1.289 25.909 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.089 3.911 3 H 0.071 0.929 4 N -0.376 5.376 5 C -0.368 4.368 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.800 3.200 10 H -0.189 1.189 11 H -0.223 1.223 12 H -0.223 1.223 13 C -0.076 4.076 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.114 4.114 17 C 0.048 3.952 18 N -0.362 5.362 19 C 0.312 3.688 20 O -0.453 6.453 21 C -0.141 4.141 22 H 0.147 0.853 23 C -0.138 4.138 24 C -0.168 4.168 25 C 0.303 3.697 26 O -0.491 6.491 27 N -0.360 5.360 28 C -0.004 4.004 29 C -0.117 4.117 30 C -0.144 4.144 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.154 0.846 37 H 0.168 0.832 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.252 0.748 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.244 0.756 46 H 0.096 0.904 47 H 0.131 0.869 48 H 0.149 0.851 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.736 -1.562 26.385 26.694 hybrid contribution -0.325 0.254 -1.704 1.753 sum -4.061 -1.307 24.680 25.046 Atomic orbital electron populations 1.22247 0.96715 1.00896 1.00919 1.19438 0.93109 0.94668 0.83842 0.92880 1.42742 1.78478 1.10459 1.05971 1.19673 1.34654 0.94301 0.88182 0.90462 1.25529 1.03091 0.96904 1.01405 1.69821 1.52764 1.10212 1.29293 0.85108 0.76663 0.78289 0.79929 1.18910 1.22317 1.22254 1.20312 0.97506 0.94222 0.95536 1.21195 0.99433 1.00603 0.92818 1.21227 0.97961 0.93583 0.98135 1.19747 1.02466 0.93919 0.95296 1.20037 0.88797 0.99602 0.86733 1.46052 1.12474 1.59302 1.18401 1.20567 0.89779 0.76664 0.81794 1.90739 1.26128 1.52419 1.75980 1.21643 0.96839 0.99293 0.96278 0.85305 1.21440 0.96577 1.01785 0.93989 1.21672 0.95433 0.95873 1.03857 1.20695 0.84093 0.84869 0.80048 1.90762 1.41351 1.81949 1.35075 1.45402 1.35053 1.21152 1.34345 1.21457 0.92519 0.95441 0.90971 1.21132 0.97771 1.00286 0.92511 1.20967 1.00834 0.94430 0.98138 0.94054 0.90960 0.94088 0.79248 0.94144 0.84590 0.83226 0.90210 0.91345 0.74804 0.91155 0.89558 0.87375 0.86373 0.75608 0.90377 0.86896 0.85084 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.47 71.98 0.68 -4.23 16 2 C 0.20 7.39 3.09 44.24 0.14 7.53 16 3 H 0.05 1.99 7.94 -2.38 -0.02 1.97 16 4 N -0.74 -35.97 5.07 -326.51 -1.66 -37.63 16 5 C -0.24 -12.80 9.93 84.03 0.83 -11.97 16 6 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 7 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 8 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 9 Si 0.97 45.56 29.55 68.60 2.03 47.58 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 12 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 13 C -0.07 -2.33 4.95 -19.87 -0.10 -2.42 16 14 C -0.12 -2.91 9.67 22.27 0.22 -2.70 16 15 C -0.09 -1.67 9.70 22.27 0.22 -1.45 16 16 C -0.11 -2.12 5.25 -19.87 -0.10 -2.22 16 17 C 0.17 2.62 5.80 85.63 0.50 3.11 16 18 N -0.71 -7.56 5.46 -466.79 -2.55 -10.11 16 19 C 0.53 6.80 7.13 87.66 0.63 7.42 16 20 O -0.57 -12.55 15.90 -3.04 -0.05 -12.60 16 21 C -0.12 -0.84 2.60 -11.45 -0.03 -0.87 16 22 H 0.13 0.49 8.12 -2.39 -0.02 0.47 16 23 C -0.10 -0.93 4.71 30.73 0.14 -0.78 16 24 C -0.13 -1.22 6.03 29.71 0.18 -1.04 16 25 C 0.51 7.64 7.71 87.71 0.68 8.32 16 26 O -0.61 -15.08 17.78 -3.04 -0.05 -15.13 16 27 N -0.71 -6.28 5.45 -467.27 -2.55 -8.82 16 28 C 0.12 0.54 6.33 86.49 0.55 1.09 16 29 C -0.10 -2.32 9.70 22.27 0.22 -2.11 16 30 C -0.13 -3.87 9.06 22.27 0.20 -3.67 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.37 19.68 6.06 -92.71 -0.56 19.12 16 35 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.14 2.78 8.04 -2.91 -0.02 2.76 16 37 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 39 H 0.07 1.20 8.08 -2.39 -0.02 1.19 16 40 H 0.42 2.57 8.15 -92.70 -0.76 1.81 16 41 H 0.07 0.79 8.13 -2.38 -0.02 0.77 16 42 H 0.09 0.91 7.90 -2.39 -0.02 0.89 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.12 0.78 8.14 -2.38 -0.02 0.77 16 45 H 0.41 3.11 8.80 -92.71 -0.82 2.30 16 46 H 0.08 0.38 8.11 -2.39 -0.02 0.36 16 47 H 0.11 -0.05 7.89 -2.39 -0.02 -0.06 16 48 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 49 H 0.10 3.62 6.91 -2.91 -0.02 3.60 16 Total: -1.00 -76.89 405.42 -0.28 -77.17 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -1.15 Total: 27.88 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 5.41 Total: -9.89 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -6.47 Total: -115.01 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.10 Total: -27.73 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.89 -0.28 -77.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326470149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.315 kcal (2) G-P(sol) polarization free energy of solvation -76.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds