Wall clock time and date at job start Wed Apr 1 2020 04:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47077 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99448 * 2 1 3 5 5 C 1.50704 * 109.46925 * 64.99867 * 4 2 1 6 6 N 1.34778 * 119.99864 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00218 * 0.02562 * 5 4 2 8 8 C 1.50710 * 109.46869 * 119.99455 * 2 1 3 9 9 O 1.21282 * 119.99492 * 120.00508 * 8 2 1 10 10 N 1.34771 * 119.99842 * 299.99938 * 8 2 1 11 11 C 1.46495 * 119.99761 * 180.02562 * 10 8 2 12 12 C 1.53003 * 109.47524 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.76447 * 295.74053 * 12 11 10 14 14 C 1.52781 * 109.77668 * 174.99778 * 12 11 10 15 15 C 1.50592 * 110.86669 * 192.89515 * 14 12 11 16 16 C 1.38985 * 117.62499 * 199.92457 * 15 14 12 17 17 C 1.37903 * 120.58411 * 180.68500 * 16 15 14 18 18 C 1.38262 * 119.82766 * 0.02562 * 17 16 15 19 19 C 1.37959 * 119.71821 * 359.79273 * 18 17 16 20 20 C 1.37665 * 122.85983 * 20.20265 * 15 14 12 21 21 C 1.50810 * 122.34264 * 358.42493 * 20 15 14 22 22 N 1.46680 * 109.67364 * 11.66311 * 21 20 15 23 23 C 1.36940 * 121.33097 * 135.57545 * 22 21 20 24 24 H 1.08000 * 119.99924 * 205.21529 * 23 22 21 25 25 C 1.38807 * 120.00334 * 25.21810 * 23 22 21 26 26 N 1.31624 * 119.99793 * 15.76067 * 25 23 22 27 27 Si 1.86806 * 120.00344 * 195.76465 * 25 23 22 28 28 H 1.48499 * 109.46792 * 94.38689 * 27 25 23 29 29 H 1.48491 * 109.47183 * 214.39053 * 27 25 23 30 30 H 1.48498 * 109.46642 * 334.39222 * 27 25 23 31 31 H 1.09007 * 109.47054 * 300.00574 * 1 2 3 32 32 H 1.08999 * 109.46869 * 60.00633 * 1 2 3 33 33 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47571 * 185.00138 * 4 2 1 35 35 H 1.09007 * 109.47181 * 305.00247 * 4 2 1 36 36 H 0.97004 * 119.99781 * 0.02562 * 6 5 4 37 37 H 0.96997 * 119.99859 * 180.02562 * 6 5 4 38 38 H 0.96998 * 120.00136 * 0.02562 * 10 8 2 39 39 H 1.09004 * 109.47452 * 60.00018 * 11 10 8 40 40 H 1.08999 * 109.47357 * 300.00131 * 11 10 8 41 41 H 1.08998 * 109.19737 * 72.53205 * 14 12 11 42 42 H 1.09004 * 109.19893 * 313.25713 * 14 12 11 43 43 H 1.08008 * 119.70845 * 0.72647 * 16 15 14 44 44 H 1.08003 * 120.08733 * 180.28020 * 17 16 15 45 45 H 1.08000 * 120.14070 * 179.82416 * 18 17 16 46 46 H 1.08003 * 119.74998 * 180.02562 * 19 18 17 47 47 H 1.08998 * 109.43547 * 131.73493 * 21 20 15 48 48 H 1.09009 * 109.43510 * 251.60278 * 21 20 15 49 49 H 0.97007 * 119.99715 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4766 6 7 1.9854 -0.3917 -3.7001 7 8 1.0117 1.0872 -2.3634 8 6 2.0323 -0.7103 1.2306 9 8 2.7296 -1.6964 1.1194 10 7 1.7067 -0.2497 2.4546 11 6 2.1954 -0.9399 3.6508 12 6 1.6858 -0.2183 4.9001 13 1 2.1074 0.7859 4.9434 14 6 2.0868 -1.0014 6.1491 15 6 1.3444 -0.4985 7.3589 16 6 1.8769 -0.7900 8.6091 17 6 1.2397 -0.3714 9.7582 18 6 0.0601 0.3443 9.6687 19 6 -0.4689 0.6384 8.4290 20 6 0.1747 0.2221 7.2713 21 6 -0.4439 0.5984 5.9484 22 7 0.2160 -0.1404 4.8667 23 6 -0.5061 -0.7334 3.8656 24 1 -0.0962 -1.5780 3.3316 25 6 -1.7647 -0.2491 3.5371 26 7 -2.1400 0.9426 3.9513 27 14 -2.9260 -1.2885 2.5072 28 1 -3.8298 -2.0550 3.4022 29 1 -3.7328 -0.4051 1.6276 30 1 -2.1385 -2.2317 1.6734 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1264 -0.7996 -1.2055 35 1 1.6054 -1.7200 -1.2950 36 1 2.4893 -1.2156 -3.7905 37 1 1.7291 0.1094 -4.4900 38 1 1.1487 0.5387 2.5435 39 1 3.2854 -0.9395 3.6507 40 1 1.8325 -1.9677 3.6511 41 1 3.1584 -0.8893 6.3138 42 1 1.8565 -2.0564 6.0001 43 1 2.7984 -1.3488 8.6814 44 1 1.6630 -0.5985 10.7255 45 1 -0.4447 0.6722 10.5654 46 1 -1.3901 1.1978 8.3584 47 1 -1.5056 0.3518 5.9612 48 1 -0.3229 1.6691 5.7829 49 1 -3.0195 1.2812 3.7213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327512515.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:14 Heat of formation + Delta-G solvation = -37.973324 kcal Electronic energy + Delta-G solvation = -31160.301632 eV Core-core repulsion = 27087.119684 eV Total energy + Delta-G solvation = -4073.181948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.99271 -39.39487 -38.76063 -36.59653 -33.85314 -33.76758 -33.67603 -32.86050 -31.41901 -30.25020 -28.96492 -27.62891 -25.66037 -25.55794 -23.37397 -22.79468 -21.55835 -21.12470 -20.44445 -19.37536 -18.93307 -17.46746 -17.22449 -16.40889 -16.23684 -15.67500 -15.53646 -15.32310 -15.08540 -14.57206 -14.51611 -14.27512 -14.09550 -13.67572 -13.54334 -13.04573 -12.93890 -12.75422 -12.59974 -12.50425 -12.36588 -12.04252 -11.69190 -11.63445 -11.55070 -11.14404 -10.99647 -10.86357 -10.81140 -10.73345 -10.68441 -10.47327 -10.20614 -9.98281 -9.88828 -9.74487 -9.68773 -9.14447 -8.76140 -8.29087 -8.22231 -7.85996 -6.86167 -5.91618 -3.31877 1.85762 1.93415 2.64303 3.20542 3.32411 3.40232 3.41045 3.42072 3.97857 4.27944 4.38620 4.77053 5.08292 5.13679 5.19768 5.22643 5.27632 5.36316 5.42193 5.46183 5.56994 5.70229 5.71342 5.87196 5.89277 5.91458 5.93922 6.04138 6.06599 6.18647 6.29602 6.33831 6.37716 6.42373 6.54454 6.61590 6.65788 6.80254 6.83778 6.93426 6.94758 7.12164 7.14777 7.18982 7.23559 7.48708 7.62365 7.73633 8.22685 8.23541 8.28225 8.86672 9.07141 9.68165 10.25177 11.17746 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.003255 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.645152 B = 8599.159351 C = 9860.774019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 H 0.099 0.901 4 C -0.122 4.122 5 C 0.517 3.483 6 N -0.861 5.861 7 O -0.537 6.537 8 C 0.514 3.486 9 O -0.570 6.570 10 N -0.690 5.690 11 C 0.136 3.864 12 C 0.158 3.842 13 H 0.041 0.959 14 C -0.090 4.090 15 C -0.068 4.068 16 C -0.128 4.128 17 C -0.140 4.140 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.077 4.077 21 C 0.207 3.793 22 N -0.588 5.588 23 C -0.245 4.245 24 H 0.074 0.926 25 C 0.010 3.990 26 N -0.902 5.902 27 Si 0.890 3.110 28 H -0.289 1.289 29 H -0.289 1.289 30 H -0.276 1.276 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.401 0.599 37 H 0.398 0.602 38 H 0.417 0.583 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.097 0.903 48 H 0.042 0.958 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -1.725 -2.913 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 H 0.117 0.883 4 C -0.162 4.162 5 C 0.302 3.698 6 N -0.424 5.424 7 O -0.413 6.413 8 C 0.300 3.700 9 O -0.451 6.451 10 N -0.340 5.340 11 C 0.011 3.989 12 C 0.051 3.949 13 H 0.059 0.941 14 C -0.130 4.130 15 C -0.068 4.068 16 C -0.146 4.146 17 C -0.158 4.158 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.079 4.079 21 C 0.082 3.918 22 N -0.311 5.311 23 C -0.374 4.374 24 H 0.092 0.908 25 C -0.189 4.189 26 N -0.547 5.547 27 Si 0.720 3.280 28 H -0.217 1.217 29 H -0.215 1.215 30 H -0.202 1.202 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.229 0.771 37 H 0.228 0.772 38 H 0.254 0.746 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.114 0.886 48 H 0.060 0.940 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.528 -1.681 -2.761 9.120 hybrid contribution -0.917 -0.474 -0.618 1.203 sum 7.611 -2.155 -3.379 8.602 Atomic orbital electron populations 1.21937 0.91945 1.02534 1.04543 1.20933 0.98674 1.00406 0.91217 0.88266 1.21452 1.03513 1.00123 0.91148 1.20819 0.78241 0.85415 0.85289 1.43909 1.60593 1.29625 1.08310 1.90733 1.39316 1.24602 1.86692 1.20417 0.80008 0.84526 0.85024 1.90613 1.40020 1.27191 1.87321 1.45870 1.51590 1.32168 1.04416 1.21241 0.96736 0.96997 0.83889 1.20701 0.86775 0.96183 0.91278 0.94086 1.20877 0.97735 1.00636 0.93707 1.19483 0.95177 0.98062 0.94068 1.21125 0.99997 1.01039 0.92413 1.20846 0.96602 1.00707 0.97680 1.20950 0.96596 1.00099 0.97204 1.21121 1.00163 1.00872 0.92046 1.21000 0.93952 0.94958 0.97943 1.19772 0.97355 0.94368 0.80349 1.44058 0.98522 1.63090 1.25469 1.19136 0.98403 1.08800 1.11105 0.90827 1.24905 0.99314 0.95489 0.99200 1.69991 1.20340 1.15277 1.49064 0.86461 0.81515 0.80010 0.79983 1.21660 1.21515 1.20164 0.90363 0.90500 0.92954 0.88177 0.88230 0.77105 0.77160 0.74556 0.92525 0.91526 0.91901 0.90805 0.87096 0.87138 0.87004 0.86476 0.88555 0.94013 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.83 37.16 0.33 -2.31 16 2 C -0.09 -1.41 2.37 -91.77 -0.22 -1.63 16 3 H 0.10 1.50 7.96 -51.93 -0.41 1.09 16 4 C -0.12 -1.56 4.52 -27.88 -0.13 -1.69 16 5 C 0.52 6.48 7.82 -10.98 -0.09 6.39 16 6 N -0.86 -6.95 8.87 31.22 0.28 -6.67 16 7 O -0.54 -8.83 14.80 5.56 0.08 -8.75 16 8 C 0.51 9.20 7.15 -10.98 -0.08 9.13 16 9 O -0.57 -11.31 15.92 5.56 0.09 -11.22 16 10 N -0.69 -12.64 3.93 -60.29 -0.24 -12.87 16 11 C 0.14 2.43 4.42 -4.04 -0.02 2.41 16 12 C 0.16 2.92 2.99 -67.65 -0.20 2.71 16 13 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 14 C -0.09 -1.50 5.21 -28.05 -0.15 -1.65 16 15 C -0.07 -1.20 5.76 -104.61 -0.60 -1.81 16 16 C -0.13 -1.98 9.59 -39.43 -0.38 -2.36 16 17 C -0.14 -2.05 10.04 -39.70 -0.40 -2.45 16 18 C -0.13 -1.97 10.05 -39.67 -0.40 -2.37 16 19 C -0.12 -2.14 9.62 -39.46 -0.38 -2.52 16 20 C -0.08 -1.49 5.82 -104.55 -0.61 -2.10 16 21 C 0.21 4.55 4.85 -5.04 -0.02 4.52 16 22 N -0.59 -12.87 2.87 -166.40 -0.48 -13.35 16 23 C -0.25 -5.85 7.17 -15.06 -0.11 -5.96 16 24 H 0.07 1.82 6.06 -52.49 -0.32 1.50 16 25 C 0.01 0.25 4.99 -17.43 -0.09 0.16 16 26 N -0.90 -23.48 11.14 55.49 0.62 -22.86 16 27 Si 0.89 20.73 29.58 -169.99 -5.03 15.70 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.08 1.50 7.56 -51.93 -0.39 1.11 16 32 H 0.08 1.33 5.95 -51.93 -0.31 1.02 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.16 7.96 -51.93 -0.41 0.75 16 35 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 36 H 0.40 2.09 8.83 -40.82 -0.36 1.73 16 37 H 0.40 2.78 8.93 -40.82 -0.36 2.41 16 38 H 0.42 8.07 6.89 -40.82 -0.28 7.79 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.30 7.26 -51.93 -0.38 0.93 16 41 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 42 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 43 H 0.11 1.47 8.05 -52.48 -0.42 1.04 16 44 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 46 H 0.12 1.91 8.05 -52.48 -0.42 1.48 16 47 H 0.10 2.38 6.39 -51.93 -0.33 2.05 16 48 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 49 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -29.85 390.84 -9.66 -39.51 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -7.34 Total: 16.15 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -3.53 Total: -1.51 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.18 Total: -55.76 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.17 Total: -19.97 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.85 -9.66 -39.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327512515.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.536 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds