Wall clock time and date at job start Wed Apr 1 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47077 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99448 * 2 1 3 5 5 C 1.50704 * 109.46925 * 64.99867 * 4 2 1 6 6 N 1.34778 * 119.99864 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00218 * 0.02562 * 5 4 2 8 8 C 1.50710 * 109.46869 * 119.99455 * 2 1 3 9 9 O 1.21282 * 119.99492 * 120.00508 * 8 2 1 10 10 N 1.34771 * 119.99842 * 299.99938 * 8 2 1 11 11 C 1.46495 * 119.99761 * 180.02562 * 10 8 2 12 12 C 1.53003 * 109.47524 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.76447 * 295.74053 * 12 11 10 14 14 C 1.52781 * 109.77668 * 174.99778 * 12 11 10 15 15 C 1.50592 * 110.86669 * 192.89515 * 14 12 11 16 16 C 1.38985 * 117.62499 * 199.92457 * 15 14 12 17 17 C 1.37903 * 120.58411 * 180.68500 * 16 15 14 18 18 C 1.38262 * 119.82766 * 0.02562 * 17 16 15 19 19 C 1.37959 * 119.71821 * 359.79273 * 18 17 16 20 20 C 1.37665 * 122.85983 * 20.20265 * 15 14 12 21 21 C 1.50810 * 122.34264 * 358.42493 * 20 15 14 22 22 N 1.46680 * 109.67364 * 11.66311 * 21 20 15 23 23 C 1.36940 * 121.33097 * 135.57545 * 22 21 20 24 24 H 1.08000 * 119.99924 * 205.21529 * 23 22 21 25 25 C 1.38807 * 120.00334 * 25.21810 * 23 22 21 26 26 N 1.31624 * 119.99793 * 15.76067 * 25 23 22 27 27 Si 1.86806 * 120.00344 * 195.76465 * 25 23 22 28 28 H 1.48499 * 109.46792 * 94.38689 * 27 25 23 29 29 H 1.48491 * 109.47183 * 214.39053 * 27 25 23 30 30 H 1.48498 * 109.46642 * 334.39222 * 27 25 23 31 31 H 1.09007 * 109.47054 * 300.00574 * 1 2 3 32 32 H 1.08999 * 109.46869 * 60.00633 * 1 2 3 33 33 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47571 * 185.00138 * 4 2 1 35 35 H 1.09007 * 109.47181 * 305.00247 * 4 2 1 36 36 H 0.97004 * 119.99781 * 0.02562 * 6 5 4 37 37 H 0.96997 * 119.99859 * 180.02562 * 6 5 4 38 38 H 0.96998 * 120.00136 * 0.02562 * 10 8 2 39 39 H 1.09004 * 109.47452 * 60.00018 * 11 10 8 40 40 H 1.08999 * 109.47357 * 300.00131 * 11 10 8 41 41 H 1.08998 * 109.19737 * 72.53205 * 14 12 11 42 42 H 1.09004 * 109.19893 * 313.25713 * 14 12 11 43 43 H 1.08008 * 119.70845 * 0.72647 * 16 15 14 44 44 H 1.08003 * 120.08733 * 180.28020 * 17 16 15 45 45 H 1.08000 * 120.14070 * 179.82416 * 18 17 16 46 46 H 1.08003 * 119.74998 * 180.02562 * 19 18 17 47 47 H 1.08998 * 109.43547 * 131.73493 * 21 20 15 48 48 H 1.09009 * 109.43510 * 251.60278 * 21 20 15 49 49 H 0.97007 * 119.99715 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4766 6 7 1.9854 -0.3917 -3.7001 7 8 1.0117 1.0872 -2.3634 8 6 2.0323 -0.7103 1.2306 9 8 2.7296 -1.6964 1.1194 10 7 1.7067 -0.2497 2.4546 11 6 2.1954 -0.9399 3.6508 12 6 1.6858 -0.2183 4.9001 13 1 2.1074 0.7859 4.9434 14 6 2.0868 -1.0014 6.1491 15 6 1.3444 -0.4985 7.3589 16 6 1.8769 -0.7900 8.6091 17 6 1.2397 -0.3714 9.7582 18 6 0.0601 0.3443 9.6687 19 6 -0.4689 0.6384 8.4290 20 6 0.1747 0.2221 7.2713 21 6 -0.4439 0.5984 5.9484 22 7 0.2160 -0.1404 4.8667 23 6 -0.5061 -0.7334 3.8656 24 1 -0.0962 -1.5780 3.3316 25 6 -1.7647 -0.2491 3.5371 26 7 -2.1400 0.9426 3.9513 27 14 -2.9260 -1.2885 2.5072 28 1 -3.8298 -2.0550 3.4022 29 1 -3.7328 -0.4051 1.6276 30 1 -2.1385 -2.2317 1.6734 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1264 -0.7996 -1.2055 35 1 1.6054 -1.7200 -1.2950 36 1 2.4893 -1.2156 -3.7905 37 1 1.7291 0.1094 -4.4900 38 1 1.1487 0.5387 2.5435 39 1 3.2854 -0.9395 3.6507 40 1 1.8325 -1.9677 3.6511 41 1 3.1584 -0.8893 6.3138 42 1 1.8565 -2.0564 6.0001 43 1 2.7984 -1.3488 8.6814 44 1 1.6630 -0.5985 10.7255 45 1 -0.4447 0.6722 10.5654 46 1 -1.3901 1.1978 8.3584 47 1 -1.5056 0.3518 5.9612 48 1 -0.3229 1.6691 5.7829 49 1 -3.0195 1.2812 3.7213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327512515.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:12 Heat of formation + Delta-G solvation = -57.425104 kcal Electronic energy + Delta-G solvation = -31161.145125 eV Core-core repulsion = 27087.119684 eV Total energy + Delta-G solvation = -4074.025441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.27513 -40.70225 -40.03443 -38.09190 -35.33042 -35.16161 -34.62430 -34.38392 -32.94059 -31.72455 -30.46629 -28.82041 -27.33842 -27.01452 -24.73521 -24.42997 -22.88248 -22.49067 -21.57846 -20.76471 -20.40795 -18.72053 -18.24556 -17.86626 -17.66475 -17.04826 -16.88417 -16.54189 -16.47821 -16.02733 -15.98207 -15.79919 -15.42215 -15.18873 -14.89542 -14.58069 -14.33938 -14.12318 -14.01040 -13.80494 -13.69729 -13.43505 -13.26809 -13.10670 -12.97263 -12.74697 -12.61366 -12.48511 -12.23803 -12.15524 -12.12140 -12.05159 -11.83699 -11.59344 -11.26999 -10.97865 -10.68433 -10.63189 -10.51619 -9.79085 -9.52550 -9.25085 -8.69337 -7.85538 -5.24773 0.59840 0.63770 1.39847 1.46282 1.50093 1.66224 1.75871 2.29309 2.48722 2.81905 2.99652 3.33173 3.52949 3.63396 3.86478 3.96357 4.01505 4.11959 4.23242 4.24811 4.25716 4.41278 4.42376 4.45938 4.54250 4.67221 4.69956 4.73653 4.77244 4.84923 4.93783 4.94181 4.98494 5.08757 5.20873 5.24754 5.28220 5.33660 5.44907 5.52425 5.65597 5.71378 5.74455 5.76488 5.95875 6.02858 6.28898 6.35825 6.47990 6.75775 7.16103 7.36484 7.40029 7.83620 8.38288 9.22364 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.003255 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.645152 B = 8599.159351 C = 9860.774019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.104 0.896 4 C -0.116 4.116 5 C 0.518 3.482 6 N -0.836 5.836 7 O -0.582 6.582 8 C 0.515 3.485 9 O -0.586 6.586 10 N -0.695 5.695 11 C 0.141 3.859 12 C 0.158 3.842 13 H 0.041 0.959 14 C -0.083 4.083 15 C -0.083 4.083 16 C -0.127 4.127 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.138 4.138 20 C -0.108 4.108 21 C 0.223 3.777 22 N -0.599 5.599 23 C -0.224 4.224 24 H 0.068 0.932 25 C -0.029 4.029 26 N -0.926 5.926 27 Si 0.928 3.072 28 H -0.298 1.298 29 H -0.295 1.295 30 H -0.272 1.272 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.418 0.582 37 H 0.408 0.592 38 H 0.410 0.590 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.141 0.859 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.013 0.987 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.193 -3.078 -2.001 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.122 0.878 4 C -0.157 4.157 5 C 0.304 3.696 6 N -0.400 5.400 7 O -0.462 6.462 8 C 0.302 3.698 9 O -0.469 6.469 10 N -0.344 5.344 11 C 0.016 3.984 12 C 0.052 3.948 13 H 0.059 0.941 14 C -0.123 4.123 15 C -0.084 4.084 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.157 4.157 20 C -0.110 4.110 21 C 0.097 3.903 22 N -0.323 5.323 23 C -0.354 4.354 24 H 0.085 0.915 25 C -0.225 4.225 26 N -0.573 5.573 27 Si 0.759 3.241 28 H -0.226 1.226 29 H -0.222 1.222 30 H -0.196 1.196 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.249 0.751 37 H 0.239 0.761 38 H 0.247 0.753 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.159 0.841 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.131 0.869 47 H 0.078 0.922 48 H 0.031 0.969 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.152 -3.085 -1.877 11.722 hybrid contribution -1.634 -0.088 -0.831 1.835 sum 9.518 -3.173 -2.708 10.392 Atomic orbital electron populations 1.21793 0.93327 1.01504 1.03251 1.20894 0.97276 1.00907 0.91639 0.87821 1.21402 1.04454 0.99869 0.89934 1.20733 0.77862 0.84745 0.86300 1.43669 1.59233 1.29930 1.07192 1.90724 1.41618 1.26527 1.87366 1.20743 0.79506 0.84223 0.85332 1.90597 1.40845 1.27867 1.87549 1.45961 1.51499 1.31949 1.05000 1.21232 0.97889 0.95746 0.83482 1.20842 0.84448 0.96659 0.92813 0.94119 1.20818 0.99588 0.99680 0.92172 1.19673 0.94843 0.98180 0.95671 1.21443 1.00890 1.00631 0.91494 1.21327 0.95707 0.98754 0.99095 1.21297 0.96880 0.99306 0.97053 1.21227 1.00359 1.01368 0.92741 1.20765 0.95639 0.97809 0.96773 1.19321 0.95758 0.92792 0.82394 1.44211 1.00235 1.62780 1.25097 1.19123 0.98126 1.07780 1.10382 0.91460 1.25271 1.00497 0.96120 1.00597 1.70102 1.20065 1.16408 1.50700 0.85849 0.80323 0.78978 0.78956 1.22606 1.22228 1.19640 0.92897 0.90441 0.93732 0.86479 0.87658 0.75084 0.76069 0.75326 0.90245 0.93191 0.88549 0.91232 0.84087 0.83383 0.84044 0.86879 0.92231 0.96923 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 8.83 71.98 0.64 -4.37 16 2 C -0.09 -2.65 2.37 -11.54 -0.03 -2.68 16 3 H 0.10 3.14 7.96 -2.38 -0.02 3.12 16 4 C -0.12 -2.81 4.52 29.85 0.13 -2.67 16 5 C 0.52 12.27 7.82 87.66 0.69 12.96 16 6 N -0.84 -11.59 8.87 -173.53 -1.54 -13.13 16 7 O -0.58 -18.94 14.80 -3.03 -0.04 -18.98 16 8 C 0.52 18.25 7.15 87.66 0.63 18.88 16 9 O -0.59 -22.58 15.92 -3.04 -0.05 -22.63 16 10 N -0.70 -25.65 3.93 -463.06 -1.82 -27.47 16 11 C 0.14 4.95 4.42 86.38 0.38 5.33 16 12 C 0.16 5.82 2.99 44.78 0.13 5.96 16 13 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 14 C -0.08 -2.64 5.21 29.74 0.15 -2.49 16 15 C -0.08 -2.84 5.76 -19.85 -0.11 -2.95 16 16 C -0.13 -3.47 9.59 22.37 0.21 -3.25 16 17 C -0.13 -3.27 10.04 22.20 0.22 -3.05 16 18 C -0.13 -3.51 10.05 22.21 0.22 -3.28 16 19 C -0.14 -4.78 9.62 22.35 0.22 -4.56 16 20 C -0.11 -4.24 5.82 -19.82 -0.12 -4.36 16 21 C 0.22 10.35 4.85 85.63 0.42 10.76 16 22 N -0.60 -27.12 2.87 -680.36 -1.95 -29.07 16 23 C -0.22 -11.05 7.17 84.03 0.60 -10.45 16 24 H 0.07 3.40 6.06 -2.91 -0.02 3.38 16 25 C -0.03 -1.50 4.99 84.86 0.42 -1.07 16 26 N -0.93 -50.95 11.14 21.65 0.24 -50.71 16 27 Si 0.93 44.07 29.58 68.60 2.03 46.09 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 30 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 31 H 0.05 2.12 7.56 -2.38 -0.02 2.10 16 32 H 0.08 2.74 5.95 -2.39 -0.01 2.73 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.12 2.45 7.96 -2.39 -0.02 2.43 16 35 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.42 3.13 8.83 -92.71 -0.82 2.31 16 37 H 0.41 4.78 8.93 -92.71 -0.83 3.95 16 38 H 0.41 16.42 6.89 -92.71 -0.64 15.78 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.05 1.94 7.26 -2.39 -0.02 1.92 16 41 H 0.10 2.40 8.10 -2.39 -0.02 2.38 16 42 H 0.07 2.27 8.03 -2.38 -0.02 2.25 16 43 H 0.14 3.00 8.05 -2.91 -0.02 2.97 16 44 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 45 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 46 H 0.11 3.84 8.05 -2.91 -0.02 3.82 16 47 H 0.06 3.16 6.39 -2.39 -0.02 3.14 16 48 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 Total: -1.00 -67.43 390.84 0.40 -67.04 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -1.29 Total: 40.15 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 4.81 Total: 8.70 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -5.07 Total: -120.38 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.09 Total: -41.61 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -67.43 0.40 -67.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327512515.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.612 kcal (2) G-P(sol) polarization free energy of solvation -67.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds