Wall clock time and date at job start Wed Apr 1 2020 04:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47301 * 2 1 4 4 C 1.53009 * 109.47078 * 119.99380 * 2 1 3 5 5 C 1.50702 * 109.47033 * 295.00491 * 4 2 1 6 6 N 1.34776 * 119.99549 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99903 * 359.97438 * 5 4 2 8 8 C 1.50702 * 109.47675 * 239.99352 * 2 1 3 9 9 O 1.21278 * 120.00044 * 240.00430 * 8 2 1 10 10 N 1.34777 * 119.99418 * 60.00169 * 8 2 1 11 11 C 1.46507 * 119.99623 * 180.02562 * 10 8 2 12 12 C 1.52999 * 109.47010 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.76270 * 295.73865 * 12 11 10 14 14 C 1.52779 * 109.77027 * 174.99856 * 12 11 10 15 15 C 1.50599 * 110.86274 * 192.89064 * 14 12 11 16 16 C 1.38981 * 117.62262 * 199.91996 * 15 14 12 17 17 C 1.37909 * 120.58244 * 180.68178 * 16 15 14 18 18 C 1.38261 * 119.83083 * 0.02562 * 17 16 15 19 19 C 1.37963 * 119.71362 * 359.79255 * 18 17 16 20 20 C 1.37661 * 122.86159 * 20.20583 * 15 14 12 21 21 C 1.50816 * 122.34383 * 358.41616 * 20 15 14 22 22 N 1.46682 * 109.67098 * 11.67357 * 21 20 15 23 23 C 1.36935 * 121.33998 * 135.57374 * 22 21 20 24 24 H 1.08001 * 120.00358 * 207.48705 * 23 22 21 25 25 C 1.38810 * 119.99565 * 27.47601 * 23 22 21 26 26 N 1.31619 * 120.00321 * 10.27446 * 25 23 22 27 27 Si 1.86797 * 119.99950 * 190.26375 * 25 23 22 28 28 H 1.48501 * 109.47202 * 0.02562 * 27 25 23 29 29 H 1.48509 * 109.47063 * 120.00727 * 27 25 23 30 30 H 1.48502 * 109.47516 * 240.00387 * 27 25 23 31 31 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47228 * 300.00524 * 1 2 3 33 33 H 1.09008 * 109.46896 * 60.00681 * 1 2 3 34 34 H 1.09004 * 109.46471 * 55.00060 * 4 2 1 35 35 H 1.08993 * 109.47286 * 175.00127 * 4 2 1 36 36 H 0.97002 * 120.00211 * 359.97438 * 6 5 4 37 37 H 0.97001 * 119.99569 * 179.97438 * 6 5 4 38 38 H 0.96998 * 120.00637 * 0.02562 * 10 8 2 39 39 H 1.08996 * 109.47003 * 59.99875 * 11 10 8 40 40 H 1.08997 * 109.46537 * 299.99806 * 11 10 8 41 41 H 1.09005 * 109.19777 * 72.53294 * 14 12 11 42 42 H 1.09000 * 109.19806 * 313.24525 * 14 12 11 43 43 H 1.08005 * 119.71289 * 0.73366 * 16 15 14 44 44 H 1.08004 * 120.08480 * 180.28224 * 17 16 15 45 45 H 1.08002 * 120.14722 * 179.81427 * 18 17 16 46 46 H 1.07997 * 119.74885 * 180.02562 * 19 18 17 47 47 H 1.09000 * 109.43519 * 131.73411 * 21 20 15 48 48 H 1.09001 * 109.43674 * 251.60822 * 21 20 15 49 49 H 0.96997 * 120.00343 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6412 0.0572 2.4767 6 7 1.9843 -0.3917 3.7003 7 8 1.0115 1.0875 2.3632 8 6 2.0324 -0.7105 -1.2304 9 8 2.7297 -1.6966 -1.1189 10 7 1.7069 -0.2501 -2.4545 11 6 2.1949 -0.9411 -3.6506 12 6 1.6856 -0.2195 -4.8999 13 1 0.5982 -0.2815 -4.9438 14 6 2.2905 -0.8589 -6.1487 15 6 2.0650 0.0092 -7.3585 16 6 2.1627 -0.5900 -8.6087 17 6 1.9815 0.1507 -9.7578 18 6 1.7006 1.5015 -9.6683 19 6 1.5993 2.0982 -8.4285 20 6 1.7764 1.3523 -7.2708 21 6 1.6275 2.0609 -5.9479 22 7 2.1030 1.1919 -4.8660 23 6 2.9026 1.6742 -3.8644 24 1 3.5881 1.0131 -3.3550 25 6 2.8321 3.0128 -3.5040 26 7 1.8656 3.7715 -3.9758 27 14 4.1089 3.7375 -2.3490 28 1 5.0822 2.6842 -1.9634 29 1 4.8237 4.8448 -3.0334 30 1 3.4363 4.2598 -1.1324 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.6053 -1.7197 1.2953 35 1 3.1262 -0.7994 1.2058 36 1 2.4876 -1.2159 3.7910 37 1 1.7279 0.1095 4.4902 38 1 1.1495 0.5387 -2.5436 39 1 1.8312 -1.9686 -3.6504 40 1 3.2848 -0.9415 -3.6506 41 1 1.8269 -1.8315 -6.3139 42 1 3.3617 -0.9940 -5.9991 43 1 2.3816 -1.6451 -8.6811 44 1 2.0547 -0.3241 -10.7252 45 1 1.5607 2.0871 -10.5649 46 1 1.3795 3.1532 -8.3578 47 1 2.2146 2.9792 -5.9601 48 1 0.5779 2.3044 -5.7829 49 1 1.8162 4.7068 -3.7236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327512520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:26 Heat of formation + Delta-G solvation = -39.007294 kcal Electronic energy + Delta-G solvation = -31040.838531 eV Core-core repulsion = 26967.611746 eV Total energy + Delta-G solvation = -4073.226785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.00288 -39.38599 -38.76201 -36.59239 -33.90229 -33.76353 -33.67911 -32.86183 -31.40792 -30.24088 -28.95528 -27.72444 -25.71398 -25.52341 -23.41486 -22.80257 -21.54890 -21.11493 -20.44781 -19.38061 -18.93577 -17.47158 -17.22907 -16.39693 -16.24024 -15.79069 -15.39623 -15.36242 -15.18334 -14.56807 -14.48534 -14.28728 -14.02121 -13.81643 -13.42850 -13.20243 -12.89105 -12.77552 -12.59688 -12.47798 -12.43464 -12.07396 -11.77302 -11.65548 -11.55091 -11.15196 -10.98915 -10.92761 -10.86020 -10.79613 -10.70780 -10.48740 -10.18743 -9.99006 -9.90046 -9.75148 -9.69507 -9.16613 -8.77338 -8.28762 -8.21588 -7.84705 -6.82106 -5.90971 -3.35029 1.86757 1.94602 2.63803 3.21913 3.32178 3.38380 3.42165 3.42633 3.97107 4.29039 4.38798 4.74263 5.06656 5.13078 5.16387 5.22320 5.29504 5.36659 5.38674 5.47165 5.57824 5.65744 5.71801 5.74362 5.85370 5.91418 5.95127 6.05035 6.06575 6.12171 6.19782 6.29675 6.31863 6.35225 6.47963 6.55654 6.62808 6.71044 6.81485 6.94436 6.96358 7.14283 7.15617 7.20613 7.23154 7.50736 7.64795 7.73397 8.22663 8.24844 8.28825 8.86338 9.08271 9.67880 10.25744 11.18142 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.003229 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.304336 B = 8669.551896 C = 9858.856069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.106 0.894 4 C -0.121 4.121 5 C 0.516 3.484 6 N -0.860 5.860 7 O -0.537 6.537 8 C 0.515 3.485 9 O -0.570 6.570 10 N -0.690 5.690 11 C 0.136 3.864 12 C 0.158 3.842 13 H 0.041 0.959 14 C -0.090 4.090 15 C -0.068 4.068 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.077 4.077 21 C 0.207 3.793 22 N -0.588 5.588 23 C -0.245 4.245 24 H 0.073 0.927 25 C 0.009 3.991 26 N -0.905 5.905 27 Si 0.894 3.106 28 H -0.278 1.278 29 H -0.289 1.289 30 H -0.286 1.286 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.401 0.599 37 H 0.398 0.602 38 H 0.416 0.584 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.099 0.901 48 H 0.042 0.958 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 -9.248 3.086 9.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.124 0.876 4 C -0.162 4.162 5 C 0.302 3.698 6 N -0.424 5.424 7 O -0.413 6.413 8 C 0.301 3.699 9 O -0.451 6.451 10 N -0.340 5.340 11 C 0.012 3.988 12 C 0.050 3.950 13 H 0.059 0.941 14 C -0.130 4.130 15 C -0.068 4.068 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.079 4.079 21 C 0.082 3.918 22 N -0.312 5.312 23 C -0.374 4.374 24 H 0.090 0.910 25 C -0.190 4.190 26 N -0.549 5.549 27 Si 0.724 3.276 28 H -0.202 1.202 29 H -0.216 1.216 30 H -0.213 1.213 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.229 0.771 37 H 0.229 0.771 38 H 0.254 0.746 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.117 0.883 48 H 0.060 0.940 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.943 -9.101 2.928 9.756 hybrid contribution 0.720 0.731 0.688 1.235 sum -1.223 -8.371 3.616 9.200 Atomic orbital electron populations 1.21870 0.92681 1.01769 1.04082 1.20969 0.98106 1.01312 0.91374 0.87590 1.21440 1.03856 0.99808 0.91073 1.20819 0.78302 0.85413 0.85296 1.43904 1.60630 1.29581 1.08300 1.90738 1.39453 1.24438 1.86662 1.20366 0.80264 0.84295 0.84986 1.90613 1.39700 1.27499 1.87301 1.45869 1.52173 1.31516 1.04411 1.21240 0.99629 0.94074 0.83885 1.20708 0.96328 0.86660 0.91258 0.94086 1.20878 1.01626 0.96721 0.93733 1.19483 0.99497 0.93815 0.94054 1.21123 1.01758 0.99276 0.92420 1.20844 1.02861 0.94505 0.97669 1.20952 1.01706 0.94989 0.97205 1.21124 1.01185 0.99863 0.92039 1.21036 0.95302 0.93495 0.98025 1.19807 0.98608 0.93202 0.80221 1.44041 1.58140 1.03471 1.25538 1.19148 1.13690 0.93582 1.10999 0.90981 1.25010 0.97359 0.97787 0.98868 1.69945 1.31137 1.06762 1.47074 0.86335 0.81355 0.79255 0.80680 1.20250 1.21550 1.21298 0.93048 0.90104 0.91757 0.88300 0.88013 0.77100 0.77139 0.74581 0.92512 0.91546 0.91911 0.90833 0.87113 0.87152 0.87014 0.86471 0.88333 0.94043 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.83 37.16 0.33 -1.77 16 2 C -0.10 -1.50 2.37 -91.77 -0.22 -1.72 16 3 H 0.11 1.86 7.95 -51.93 -0.41 1.45 16 4 C -0.12 -1.55 4.52 -27.88 -0.13 -1.68 16 5 C 0.52 6.52 7.82 -10.98 -0.09 6.44 16 6 N -0.86 -7.00 8.87 31.22 0.28 -6.72 16 7 O -0.54 -8.95 14.80 5.56 0.08 -8.87 16 8 C 0.52 9.23 7.15 -10.98 -0.08 9.15 16 9 O -0.57 -11.30 15.92 5.56 0.09 -11.21 16 10 N -0.69 -12.68 3.96 -60.29 -0.24 -12.92 16 11 C 0.14 2.45 4.43 -4.04 -0.02 2.43 16 12 C 0.16 2.93 2.99 -67.65 -0.20 2.73 16 13 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 14 C -0.09 -1.52 5.21 -28.05 -0.15 -1.66 16 15 C -0.07 -1.22 5.76 -104.61 -0.60 -1.82 16 16 C -0.13 -2.00 9.59 -39.43 -0.38 -2.37 16 17 C -0.14 -2.07 10.04 -39.69 -0.40 -2.46 16 18 C -0.13 -1.98 10.05 -39.67 -0.40 -2.38 16 19 C -0.12 -2.15 9.62 -39.46 -0.38 -2.53 16 20 C -0.08 -1.50 5.82 -104.55 -0.61 -2.11 16 21 C 0.21 4.59 4.81 -5.04 -0.02 4.57 16 22 N -0.59 -13.03 2.87 -166.39 -0.48 -13.51 16 23 C -0.25 -5.95 7.11 -15.06 -0.11 -6.05 16 24 H 0.07 1.81 6.15 -52.49 -0.32 1.48 16 25 C 0.01 0.22 5.10 -17.43 -0.09 0.13 16 26 N -0.90 -23.88 10.98 55.49 0.61 -23.27 16 27 Si 0.89 21.03 29.57 -169.99 -5.03 16.01 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.20 5.95 -51.93 -0.31 0.90 16 33 H 0.06 0.94 7.57 -51.92 -0.39 0.55 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.10 1.28 7.95 -51.93 -0.41 0.87 16 36 H 0.40 2.08 8.83 -40.82 -0.36 1.72 16 37 H 0.40 2.81 8.93 -40.82 -0.36 2.45 16 38 H 0.42 8.12 6.89 -40.82 -0.28 7.84 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.31 7.25 -51.93 -0.38 0.93 16 41 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 43 H 0.11 1.47 8.05 -52.48 -0.42 1.05 16 44 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.12 1.92 8.05 -52.49 -0.42 1.50 16 47 H 0.10 2.46 6.38 -51.93 -0.33 2.13 16 48 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -30.42 390.78 -9.67 -40.10 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -7.34 Total: 15.62 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -3.53 Total: -1.12 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.17 Total: -56.42 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.17 Total: -20.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.42 -9.67 -40.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327512520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.090 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds