Wall clock time and date at job start Wed Apr 1 2020 04:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47301 * 2 1 4 4 C 1.53009 * 109.47078 * 119.99380 * 2 1 3 5 5 C 1.50702 * 109.47033 * 295.00491 * 4 2 1 6 6 N 1.34776 * 119.99549 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99903 * 359.97438 * 5 4 2 8 8 C 1.50702 * 109.47675 * 239.99352 * 2 1 3 9 9 O 1.21278 * 120.00044 * 240.00430 * 8 2 1 10 10 N 1.34777 * 119.99418 * 60.00169 * 8 2 1 11 11 C 1.46507 * 119.99623 * 180.02562 * 10 8 2 12 12 C 1.52999 * 109.47010 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.76270 * 295.73865 * 12 11 10 14 14 C 1.52779 * 109.77027 * 174.99856 * 12 11 10 15 15 C 1.50599 * 110.86274 * 192.89064 * 14 12 11 16 16 C 1.38981 * 117.62262 * 199.91996 * 15 14 12 17 17 C 1.37909 * 120.58244 * 180.68178 * 16 15 14 18 18 C 1.38261 * 119.83083 * 0.02562 * 17 16 15 19 19 C 1.37963 * 119.71362 * 359.79255 * 18 17 16 20 20 C 1.37661 * 122.86159 * 20.20583 * 15 14 12 21 21 C 1.50816 * 122.34383 * 358.41616 * 20 15 14 22 22 N 1.46682 * 109.67098 * 11.67357 * 21 20 15 23 23 C 1.36935 * 121.33998 * 135.57374 * 22 21 20 24 24 H 1.08001 * 120.00358 * 207.48705 * 23 22 21 25 25 C 1.38810 * 119.99565 * 27.47601 * 23 22 21 26 26 N 1.31619 * 120.00321 * 10.27446 * 25 23 22 27 27 Si 1.86797 * 119.99950 * 190.26375 * 25 23 22 28 28 H 1.48501 * 109.47202 * 0.02562 * 27 25 23 29 29 H 1.48509 * 109.47063 * 120.00727 * 27 25 23 30 30 H 1.48502 * 109.47516 * 240.00387 * 27 25 23 31 31 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47228 * 300.00524 * 1 2 3 33 33 H 1.09008 * 109.46896 * 60.00681 * 1 2 3 34 34 H 1.09004 * 109.46471 * 55.00060 * 4 2 1 35 35 H 1.08993 * 109.47286 * 175.00127 * 4 2 1 36 36 H 0.97002 * 120.00211 * 359.97438 * 6 5 4 37 37 H 0.97001 * 119.99569 * 179.97438 * 6 5 4 38 38 H 0.96998 * 120.00637 * 0.02562 * 10 8 2 39 39 H 1.08996 * 109.47003 * 59.99875 * 11 10 8 40 40 H 1.08997 * 109.46537 * 299.99806 * 11 10 8 41 41 H 1.09005 * 109.19777 * 72.53294 * 14 12 11 42 42 H 1.09000 * 109.19806 * 313.24525 * 14 12 11 43 43 H 1.08005 * 119.71289 * 0.73366 * 16 15 14 44 44 H 1.08004 * 120.08480 * 180.28224 * 17 16 15 45 45 H 1.08002 * 120.14722 * 179.81427 * 18 17 16 46 46 H 1.07997 * 119.74885 * 180.02562 * 19 18 17 47 47 H 1.09000 * 109.43519 * 131.73411 * 21 20 15 48 48 H 1.09001 * 109.43674 * 251.60822 * 21 20 15 49 49 H 0.96997 * 120.00343 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6412 0.0572 2.4767 6 7 1.9843 -0.3917 3.7003 7 8 1.0115 1.0875 2.3632 8 6 2.0324 -0.7105 -1.2304 9 8 2.7297 -1.6966 -1.1189 10 7 1.7069 -0.2501 -2.4545 11 6 2.1949 -0.9411 -3.6506 12 6 1.6856 -0.2195 -4.8999 13 1 0.5982 -0.2815 -4.9438 14 6 2.2905 -0.8589 -6.1487 15 6 2.0650 0.0092 -7.3585 16 6 2.1627 -0.5900 -8.6087 17 6 1.9815 0.1507 -9.7578 18 6 1.7006 1.5015 -9.6683 19 6 1.5993 2.0982 -8.4285 20 6 1.7764 1.3523 -7.2708 21 6 1.6275 2.0609 -5.9479 22 7 2.1030 1.1919 -4.8660 23 6 2.9026 1.6742 -3.8644 24 1 3.5881 1.0131 -3.3550 25 6 2.8321 3.0128 -3.5040 26 7 1.8656 3.7715 -3.9758 27 14 4.1089 3.7375 -2.3490 28 1 5.0822 2.6842 -1.9634 29 1 4.8237 4.8448 -3.0334 30 1 3.4363 4.2598 -1.1324 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.6053 -1.7197 1.2953 35 1 3.1262 -0.7994 1.2058 36 1 2.4876 -1.2159 3.7910 37 1 1.7279 0.1095 4.4902 38 1 1.1495 0.5387 -2.5436 39 1 1.8312 -1.9686 -3.6504 40 1 3.2848 -0.9415 -3.6506 41 1 1.8269 -1.8315 -6.3139 42 1 3.3617 -0.9940 -5.9991 43 1 2.3816 -1.6451 -8.6811 44 1 2.0547 -0.3241 -10.7252 45 1 1.5607 2.0871 -10.5649 46 1 1.3795 3.1532 -8.3578 47 1 2.2146 2.9792 -5.9601 48 1 0.5779 2.3044 -5.7829 49 1 1.8162 4.7068 -3.7236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327512520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:25 Heat of formation + Delta-G solvation = -59.066814 kcal Electronic energy + Delta-G solvation = -31041.708377 eV Core-core repulsion = 26967.611746 eV Total energy + Delta-G solvation = -4074.096631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.27655 -40.70574 -40.04361 -38.09702 -35.33912 -35.14865 -34.64123 -34.40434 -32.94130 -31.72634 -30.46678 -28.82648 -27.37209 -26.98541 -24.71050 -24.46685 -22.88208 -22.48743 -21.59202 -20.76680 -20.42008 -18.70037 -18.27837 -17.89690 -17.68374 -17.09417 -16.78153 -16.63858 -16.49454 -16.07691 -16.00102 -15.63185 -15.53098 -15.17537 -14.86428 -14.64476 -14.36404 -14.08003 -14.00464 -13.74641 -13.72606 -13.49108 -13.24580 -13.05871 -12.93361 -12.80427 -12.60151 -12.52267 -12.25726 -12.17234 -12.14375 -12.04989 -11.86415 -11.59311 -11.27740 -10.99683 -10.69754 -10.67036 -10.52800 -9.79508 -9.52344 -9.24837 -8.67098 -7.87287 -5.30498 0.60064 0.64141 1.38478 1.44902 1.49609 1.64774 1.76435 2.27407 2.46537 2.80990 2.99922 3.32081 3.52290 3.62317 3.86422 3.94356 4.02840 4.12271 4.23130 4.24832 4.26069 4.41285 4.42774 4.45639 4.54262 4.67394 4.70648 4.73755 4.74084 4.85295 4.93858 4.94378 4.96584 5.09950 5.21845 5.25135 5.28497 5.31369 5.45059 5.54350 5.64421 5.71549 5.72744 5.76277 5.94526 6.03595 6.29078 6.36030 6.46862 6.75285 7.14973 7.35779 7.39019 7.81403 8.36626 9.20168 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.003229 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.304336 B = 8669.551896 C = 9858.856069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.116 4.116 5 C 0.517 3.483 6 N -0.835 5.835 7 O -0.584 6.584 8 C 0.516 3.484 9 O -0.586 6.586 10 N -0.695 5.695 11 C 0.141 3.859 12 C 0.158 3.842 13 H 0.042 0.958 14 C -0.084 4.084 15 C -0.084 4.084 16 C -0.127 4.127 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.138 4.138 20 C -0.109 4.109 21 C 0.223 3.777 22 N -0.600 5.600 23 C -0.225 4.225 24 H 0.066 0.934 25 C -0.034 4.034 26 N -0.928 5.928 27 Si 0.937 3.063 28 H -0.276 1.276 29 H -0.295 1.295 30 H -0.294 1.294 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.418 0.582 37 H 0.408 0.592 38 H 0.410 0.590 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.142 0.858 46 H 0.113 0.887 47 H 0.061 0.939 48 H 0.013 0.987 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -12.203 2.033 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 H 0.100 0.900 4 C -0.156 4.156 5 C 0.302 3.698 6 N -0.400 5.400 7 O -0.464 6.464 8 C 0.303 3.697 9 O -0.468 6.468 10 N -0.344 5.344 11 C 0.017 3.983 12 C 0.052 3.948 13 H 0.059 0.941 14 C -0.123 4.123 15 C -0.084 4.084 16 C -0.144 4.144 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.157 4.157 20 C -0.110 4.110 21 C 0.097 3.903 22 N -0.324 5.324 23 C -0.355 4.355 24 H 0.083 0.917 25 C -0.230 4.230 26 N -0.575 5.575 27 Si 0.767 3.233 28 H -0.200 1.200 29 H -0.222 1.222 30 H -0.221 1.221 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.250 0.750 37 H 0.239 0.761 38 H 0.246 0.754 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.159 0.841 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.131 0.869 47 H 0.079 0.921 48 H 0.030 0.970 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.591 -12.121 1.901 12.372 hybrid contribution 0.634 1.554 0.943 1.926 sum -0.957 -10.566 2.844 10.984 Atomic orbital electron populations 1.21786 0.91697 1.02689 1.03326 1.20943 0.98941 0.99994 0.91766 0.90033 1.21401 1.04024 1.00350 0.89831 1.20767 0.77909 0.84731 0.86358 1.43664 1.59253 1.29899 1.07156 1.90730 1.41877 1.26407 1.87370 1.20700 0.79698 0.84024 0.85287 1.90594 1.40389 1.28307 1.87537 1.45959 1.52099 1.31306 1.04994 1.21231 0.98503 0.95093 0.83477 1.20850 0.96433 0.84668 0.92813 0.94057 1.20821 1.01386 0.97870 0.92191 1.19673 0.99893 0.93188 0.95672 1.21442 1.00671 1.00844 0.91485 1.21328 1.00394 0.94084 0.99092 1.21300 1.00329 0.95848 0.97043 1.21228 1.01848 0.99887 0.92741 1.20789 0.98681 0.94710 0.96820 1.19343 0.96125 0.92486 0.82300 1.44190 1.57992 1.05039 1.25170 1.19140 1.12880 0.93144 1.10312 0.91658 1.25431 0.98663 0.98470 1.00435 1.70069 1.32506 1.06408 1.48527 0.85657 0.79961 0.78428 0.79232 1.20041 1.22217 1.22131 0.91196 0.90557 0.92780 0.86225 0.87715 0.75040 0.76081 0.75384 0.90170 0.93279 0.88506 0.91287 0.84080 0.83370 0.84033 0.86897 0.92063 0.96970 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.83 71.98 0.64 -3.31 16 2 C -0.09 -2.98 2.37 -11.54 -0.03 -3.01 16 3 H 0.08 2.99 7.95 -2.39 -0.02 2.97 16 4 C -0.12 -2.83 4.52 29.85 0.14 -2.69 16 5 C 0.52 12.56 7.82 87.66 0.69 13.24 16 6 N -0.84 -11.91 8.87 -173.54 -1.54 -13.45 16 7 O -0.58 -19.59 14.80 -3.02 -0.04 -19.63 16 8 C 0.52 18.42 7.15 87.66 0.63 19.04 16 9 O -0.59 -22.65 15.92 -3.02 -0.05 -22.70 16 10 N -0.69 -25.81 3.96 -463.05 -1.84 -27.65 16 11 C 0.14 5.00 4.43 86.38 0.38 5.38 16 12 C 0.16 5.86 2.99 44.78 0.13 6.00 16 13 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 14 C -0.08 -2.66 5.21 29.74 0.16 -2.51 16 15 C -0.08 -2.88 5.76 -19.85 -0.11 -2.99 16 16 C -0.13 -3.48 9.59 22.37 0.21 -3.26 16 17 C -0.13 -3.28 10.04 22.20 0.22 -3.06 16 18 C -0.13 -3.52 10.05 22.21 0.22 -3.29 16 19 C -0.14 -4.81 9.62 22.35 0.22 -4.59 16 20 C -0.11 -4.27 5.82 -19.82 -0.12 -4.39 16 21 C 0.22 10.45 4.81 85.64 0.41 10.86 16 22 N -0.60 -27.45 2.87 -680.34 -1.95 -29.41 16 23 C -0.22 -11.27 7.11 84.03 0.60 -10.67 16 24 H 0.07 3.36 6.15 -2.91 -0.02 3.34 16 25 C -0.03 -1.81 5.10 84.86 0.43 -1.37 16 26 N -0.93 -51.75 10.98 21.65 0.24 -51.51 16 27 Si 0.94 44.88 29.57 68.60 2.03 46.91 16 28 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 29 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 30 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 31 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.08 2.30 5.95 -2.39 -0.01 2.28 16 33 H 0.05 1.63 7.57 -2.38 -0.02 1.61 16 34 H 0.12 2.41 8.14 -2.39 -0.02 2.40 16 35 H 0.10 2.50 7.95 -2.39 -0.02 2.49 16 36 H 0.42 3.21 8.83 -92.71 -0.82 2.39 16 37 H 0.41 4.96 8.93 -92.71 -0.83 4.13 16 38 H 0.41 16.52 6.89 -92.71 -0.64 15.88 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.05 1.92 7.25 -2.39 -0.02 1.90 16 41 H 0.10 2.42 8.10 -2.38 -0.02 2.40 16 42 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 43 H 0.14 3.01 8.05 -2.91 -0.02 2.99 16 44 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 45 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 46 H 0.11 3.86 8.05 -2.91 -0.02 3.84 16 47 H 0.06 3.28 6.38 -2.39 -0.02 3.27 16 48 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -68.92 390.78 0.38 -68.54 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: -1.29 Total: 39.51 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 4.82 Total: 9.37 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -5.09 Total: -122.01 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.09 Total: -42.33 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.92 0.38 -68.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327512520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.476 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds