Wall clock time and date at job start Wed Apr 1 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.78041 * 2 1 4 4 C 1.54324 * 110.72063 * 236.76039 * 2 1 3 5 5 N 1.47028 * 107.40075 * 219.52258 * 4 2 1 6 6 C 1.34772 * 125.64994 * 178.89963 * 5 4 2 7 7 O 1.21282 * 120.00268 * 179.97438 * 6 5 4 8 8 C 1.50701 * 120.00007 * 359.97245 * 6 5 4 9 9 C 1.50700 * 109.47488 * 180.02562 * 8 6 5 10 10 C 1.38235 * 119.99423 * 269.73229 * 9 8 6 11 11 C 1.38238 * 119.99432 * 179.81180 * 10 9 8 12 12 C 1.38235 * 120.00337 * 0.38521 * 11 10 9 13 13 C 1.38233 * 119.99422 * 359.86725 * 12 11 10 14 14 C 1.38225 * 120.00132 * 89.99988 * 9 8 6 15 15 C 1.47427 * 108.70334 * 358.86144 * 5 4 2 16 16 C 1.54914 * 104.83199 * 24.12785 * 15 5 4 17 17 H 1.08996 * 111.00651 * 204.87562 * 16 15 5 18 18 N 1.46907 * 111.00128 * 81.06447 * 16 15 5 19 19 C 1.46896 * 110.99782 * 78.90486 * 18 16 15 20 20 C 1.50705 * 109.46825 * 179.97438 * 19 18 16 21 21 O 1.21289 * 120.00201 * 359.97438 * 20 19 18 22 22 N 1.34779 * 119.99685 * 180.02562 * 20 19 18 23 23 C 1.37104 * 119.99716 * 179.97438 * 22 20 19 24 24 H 1.07992 * 119.99775 * 0.02562 * 23 22 20 25 25 C 1.38950 * 119.99739 * 179.97438 * 23 22 20 26 26 N 1.31411 * 120.00025 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99695 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46956 * 90.00371 * 27 25 23 29 29 H 1.48507 * 109.46943 * 210.00069 * 27 25 23 30 30 H 1.48496 * 109.47089 * 330.00094 * 27 25 23 31 31 H 1.09000 * 109.47100 * 176.76030 * 1 2 3 32 32 H 1.08998 * 109.47364 * 296.76892 * 1 2 3 33 33 H 1.09004 * 109.46828 * 56.76612 * 1 2 3 34 34 H 1.08998 * 109.88112 * 100.02903 * 4 2 1 35 35 H 1.09000 * 109.88103 * 339.01667 * 4 2 1 36 36 H 1.08998 * 109.47177 * 300.00695 * 8 6 5 37 37 H 1.09005 * 109.47120 * 59.99918 * 8 6 5 38 38 H 1.07994 * 120.00622 * 359.97438 * 10 9 8 39 39 H 1.08011 * 119.99774 * 180.22663 * 11 10 9 40 40 H 1.07995 * 120.00267 * 179.83837 * 12 11 10 41 41 H 1.08005 * 119.99743 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.00456 * 359.97438 * 14 9 8 43 43 H 1.08999 * 110.36780 * 142.96787 * 15 5 4 44 44 H 1.08996 * 110.36943 * 265.18571 * 15 5 4 45 45 H 1.00897 * 110.99663 * 202.85904 * 18 16 15 46 46 H 1.09000 * 109.47057 * 299.99461 * 19 18 16 47 47 H 1.09000 * 109.47057 * 59.99922 * 19 18 16 48 48 H 0.96999 * 120.00095 * 359.97438 * 22 20 19 49 49 H 0.97001 * 119.99926 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2438 -1.5535 -0.7416 6 6 3.9886 -2.3873 -1.4942 7 8 4.9343 -2.9662 -1.0029 8 6 3.6463 -2.6003 -2.9462 9 6 4.6248 -3.5709 -3.5559 10 6 5.7862 -3.1043 -4.1427 11 6 6.6856 -3.9949 -4.6986 12 6 6.4198 -5.3512 -4.6747 13 6 5.2559 -5.8172 -4.0924 14 6 4.3583 -4.9270 -3.5333 15 6 3.4657 -1.2540 0.6848 16 6 2.0832 -0.7972 1.2138 17 1 2.1919 -0.1550 2.0878 18 7 1.2272 -1.9523 1.5160 19 6 1.5882 -2.5514 2.8077 20 6 0.6903 -3.7301 3.0831 21 8 -0.1663 -4.0401 2.2823 22 7 0.8386 -4.4390 4.2197 23 6 0.0215 -5.5110 4.4705 24 1 -0.7406 -5.7875 3.7571 25 6 0.1748 -6.2422 5.6421 26 7 1.1025 -5.9060 6.5099 27 14 -0.9390 -7.7023 5.9841 28 1 -0.3245 -8.9346 5.4282 29 1 -1.1173 -7.8562 7.4504 30 1 -2.2607 -7.4769 5.3458 31 1 -0.3633 -1.0260 -0.0581 32 1 -0.3634 0.4628 0.9175 33 1 -0.3633 0.5633 -0.8596 34 1 2.3741 -0.1024 -1.9977 35 1 1.3120 -1.4739 -1.5792 36 1 2.6370 -3.0040 -3.0261 37 1 3.6999 -1.6490 -3.4756 38 1 5.9921 -2.0444 -4.1647 39 1 7.5948 -3.6307 -5.1539 40 1 7.1212 -6.0467 -5.1112 41 1 5.0480 -6.8769 -4.0741 42 1 3.4490 -5.2912 -3.0782 43 1 3.7975 -2.1479 1.2130 44 1 4.1987 -0.4550 0.7952 45 1 0.2519 -1.6943 1.4969 46 1 2.6257 -2.8840 2.7766 47 1 1.4675 -1.8107 3.5982 48 1 1.5235 -4.1908 4.8603 49 1 1.2092 -6.4162 7.3279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327881214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:03 Heat of formation + Delta-G solvation = -64.537611 kcal Electronic energy + Delta-G solvation = -29798.737940 eV Core-core repulsion = 25724.404078 eV Total energy + Delta-G solvation = -4074.333862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.37364 -40.33909 -39.86901 -38.82966 -36.15419 -35.42933 -33.84120 -33.44094 -33.16623 -31.77189 -30.51155 -28.67513 -27.64900 -27.20582 -25.86788 -23.61807 -23.48292 -22.32554 -21.19024 -20.68108 -20.24449 -19.89881 -18.18428 -17.98690 -17.61906 -17.44712 -16.97753 -16.53450 -16.44522 -16.18005 -15.84816 -15.72336 -15.50237 -15.30743 -14.71035 -14.42118 -14.28900 -14.10355 -14.06364 -13.86650 -13.63242 -13.61283 -13.46464 -13.23418 -13.10576 -12.94831 -12.87741 -12.81378 -12.44939 -12.13895 -12.08989 -11.98253 -11.87996 -11.81169 -11.55649 -11.53314 -10.95193 -10.36904 -10.04728 -9.80690 -9.64213 -9.59577 -9.30630 -8.49309 -5.98404 0.41325 0.51465 1.35719 1.39206 1.52284 1.65612 2.01711 2.08545 2.26575 2.86520 2.90246 3.17795 3.36601 3.45797 3.64191 3.72089 3.91703 3.99100 4.04618 4.15407 4.25060 4.27177 4.34483 4.38581 4.40398 4.47872 4.52682 4.55631 4.64302 4.64517 4.69094 4.73237 4.77510 4.80007 4.96973 5.09319 5.11392 5.15632 5.22251 5.35068 5.38101 5.50141 5.55941 5.61824 5.66960 5.87016 6.08014 6.12681 6.42936 6.56555 6.59189 7.09328 7.20066 7.52732 8.07491 8.68296 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009417 B = 0.002596 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.686323 B =10782.713347 C =12881.484985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.121 0.879 4 C 0.105 3.895 5 N -0.608 5.608 6 C 0.522 3.478 7 O -0.589 6.589 8 C -0.089 4.089 9 C -0.081 4.081 10 C -0.117 4.117 11 C -0.127 4.127 12 C -0.130 4.130 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.111 3.889 16 C 0.071 3.929 17 H 0.084 0.916 18 N -0.672 5.672 19 C 0.065 3.935 20 C 0.438 3.562 21 O -0.621 6.621 22 N -0.574 5.574 23 C -0.334 4.334 24 H 0.079 0.921 25 C -0.014 4.014 26 N -0.921 5.921 27 Si 0.994 3.006 28 H -0.273 1.273 29 H -0.269 1.269 30 H -0.270 1.270 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.133 0.867 42 H 0.113 0.887 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.354 0.646 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.395 0.605 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.830 15.526 -20.124 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.139 0.861 4 C -0.016 4.016 5 N -0.340 5.340 6 C 0.312 3.688 7 O -0.470 6.470 8 C -0.128 4.128 9 C -0.082 4.082 10 C -0.135 4.135 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.012 4.012 16 C -0.039 4.039 17 H 0.101 0.899 18 N -0.308 5.308 19 C -0.068 4.068 20 C 0.226 3.774 21 O -0.507 6.507 22 N -0.211 5.211 23 C -0.463 4.463 24 H 0.097 0.903 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.817 3.183 28 H -0.199 1.199 29 H -0.193 1.193 30 H -0.195 1.195 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.131 0.869 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.177 0.823 46 H 0.106 0.894 47 H 0.090 0.910 48 H 0.229 0.771 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.202 14.463 -20.622 26.198 hybrid contribution -0.446 -0.562 1.699 1.844 sum 6.756 13.900 -18.923 24.433 Atomic orbital electron populations 1.21759 0.93292 1.02134 1.03365 1.22385 0.96902 0.99425 0.91717 0.86124 1.22321 0.86807 0.94701 0.97808 1.48417 1.30464 1.44244 1.10920 1.20747 0.81497 0.77384 0.89182 1.90703 1.31501 1.49665 1.75134 1.20669 1.00107 1.01672 0.90347 1.19546 0.96366 0.93870 0.98376 1.21258 0.93456 1.00782 0.98041 1.21463 0.99890 0.93441 0.99699 1.21471 0.97249 0.96425 0.99605 1.21392 0.94916 1.00251 0.98596 1.21219 1.00334 0.93561 0.99699 1.22335 0.97193 1.00117 0.81602 1.22887 0.92016 0.90415 0.98563 0.89859 1.59991 1.09042 1.31266 1.30543 1.21513 0.98592 0.94440 0.92216 1.20836 0.87297 0.86967 0.82306 1.90476 1.39391 1.72513 1.48358 1.41953 1.32871 1.27412 1.18902 1.19666 1.14568 1.07111 1.04969 0.90281 1.26076 0.98786 1.01615 0.94924 1.69678 1.33687 1.41929 1.10935 0.84920 0.78120 0.77462 0.77791 1.19867 1.19329 1.19505 0.93299 0.91846 0.89772 0.88236 0.91419 0.87055 0.84822 0.84575 0.83672 0.83939 0.84944 0.86867 0.93711 0.89307 0.82312 0.89431 0.91030 0.77100 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.15 71.98 0.59 -1.50 16 2 C -0.09 -1.18 3.48 -9.52 -0.03 -1.21 16 3 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.11 1.64 6.07 86.73 0.53 2.17 16 5 N -0.61 -14.44 3.33 -811.78 -2.70 -17.14 16 6 C 0.52 14.74 7.84 87.66 0.69 15.43 16 7 O -0.59 -22.67 16.29 -3.04 -0.05 -22.72 16 8 C -0.09 -1.78 5.02 29.10 0.15 -1.63 16 9 C -0.08 -1.94 4.37 -19.87 -0.09 -2.02 16 10 C -0.12 -2.46 9.70 22.27 0.22 -2.24 16 11 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 12 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 13 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 14 C -0.13 -3.35 9.70 22.27 0.22 -3.14 16 15 C 0.11 2.71 6.52 86.86 0.57 3.28 16 16 C 0.07 1.49 3.13 46.39 0.15 1.63 16 17 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 18 N -0.67 -20.34 5.75 -487.94 -2.81 -23.15 16 19 C 0.06 2.28 6.01 85.56 0.51 2.80 16 20 C 0.44 21.40 7.82 87.66 0.69 22.08 16 21 O -0.62 -34.79 15.78 -3.06 -0.05 -34.84 16 22 N -0.57 -30.41 5.29 -306.98 -1.62 -32.03 16 23 C -0.33 -19.41 9.68 84.04 0.81 -18.59 16 24 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 25 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 26 N -0.92 -50.98 13.05 21.66 0.28 -50.70 16 27 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 30 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 31 H 0.05 0.98 6.67 -2.39 -0.02 0.96 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 1.17 7.76 -2.39 -0.02 1.16 16 36 H 0.11 2.02 8.08 -2.39 -0.02 2.00 16 37 H 0.13 1.66 8.08 -2.38 -0.02 1.64 16 38 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 41 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.04 1.44 6.92 -2.39 -0.02 1.42 16 44 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.35 10.80 5.90 -89.70 -0.53 10.27 16 46 H 0.09 3.07 7.08 -2.39 -0.02 3.06 16 47 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 48 H 0.40 20.02 7.90 -92.71 -0.73 19.28 16 49 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -80.38 404.53 0.91 -79.47 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -0.29 Total: 45.90 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.12 Total: 9.33 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -6.85 Total: -123.01 kcal Atomic # 8 Polarization: -57.46 SS G_CDS: -0.10 Total: -57.55 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -80.38 0.91 -79.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327881214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.932 kcal (2) G-P(sol) polarization free energy of solvation -80.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds