Wall clock time and date at job start Wed Apr 1 2020 04:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08990 * 109.46981 * 2 1 4 4 C 1.53000 * 109.46946 * 119.99799 * 2 1 3 5 5 C 1.50702 * 109.47104 * 184.99968 * 4 2 1 6 6 C 1.38652 * 120.78849 * 269.72019 * 5 4 2 7 7 C 1.38208 * 119.15730 * 179.75535 * 6 5 4 8 8 N 1.31868 * 120.76702 * 0.52937 * 7 6 5 9 9 C 1.31872 * 121.72672 * 359.74393 * 8 7 6 10 10 C 1.38202 * 120.76139 * 359.97438 * 9 8 7 11 11 N 1.46496 * 109.47273 * 239.99411 * 2 1 3 12 12 C 1.34783 * 119.99760 * 84.99750 * 11 2 1 13 13 O 1.21347 * 120.00173 * 0.02562 * 12 11 2 14 14 C 1.49452 * 119.99843 * 180.02562 * 12 11 2 15 15 O 1.21352 * 120.00368 * 353.61880 * 14 12 11 16 16 N 1.34782 * 119.99853 * 173.61935 * 14 12 11 17 17 C 1.46928 * 120.62748 * 351.27341 * 16 14 12 18 18 C 1.53194 * 108.88949 * 233.55808 * 17 16 14 19 19 C 1.53076 * 109.29729 * 305.57898 * 18 17 16 20 20 C 1.53049 * 109.65421 * 61.15586 * 19 18 17 21 21 H 1.08993 * 109.49658 * 58.64882 * 20 19 18 22 22 C 1.50701 * 109.49522 * 178.74764 * 20 19 18 23 23 H 1.08007 * 119.99833 * 35.00093 * 22 20 19 24 24 C 1.37871 * 120.00283 * 215.00448 * 22 20 19 25 25 N 1.31515 * 120.00254 * 174.90710 * 24 22 20 26 26 Si 1.86803 * 119.99766 * 354.90688 * 24 22 20 27 27 H 1.48505 * 109.46943 * 94.66596 * 26 24 22 28 28 H 1.48502 * 109.47165 * 214.66397 * 26 24 22 29 29 H 1.48499 * 109.47042 * 334.66671 * 26 24 22 30 30 C 1.46927 * 120.62789 * 171.29506 * 16 14 12 31 31 H 1.08990 * 109.47000 * 300.00136 * 1 2 3 32 32 H 1.08999 * 109.46689 * 60.00418 * 1 2 3 33 33 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46994 * 304.99994 * 4 2 1 35 35 H 1.09001 * 109.47258 * 64.99820 * 4 2 1 36 36 H 1.07996 * 120.41612 * 359.97438 * 6 5 4 37 37 H 1.07997 * 119.61523 * 180.29360 * 7 6 5 38 38 H 1.07994 * 119.62350 * 180.02562 * 9 8 7 39 39 H 1.08007 * 120.42023 * 180.02562 * 10 9 8 40 40 H 0.97003 * 120.00656 * 265.00336 * 11 2 1 41 41 H 1.08999 * 109.58763 * 353.41653 * 17 16 14 42 42 H 1.09002 * 109.58608 * 113.70289 * 17 16 14 43 43 H 1.09000 * 109.49616 * 65.38970 * 18 17 16 44 44 H 1.09001 * 109.49449 * 185.48666 * 18 17 16 45 45 H 1.08994 * 109.34804 * 301.13289 * 19 18 17 46 46 H 1.08997 * 109.44206 * 181.23101 * 19 18 17 47 47 H 0.96998 * 119.99577 * 179.97438 * 25 24 22 48 48 H 1.08997 * 109.58731 * 246.15282 * 30 16 14 49 49 H 1.08994 * 109.59038 * 6.44379 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.6149 1.3128 6 6 4.3471 -1.5782 0.7244 7 6 5.7207 -1.4446 0.7987 8 7 6.2660 -0.4223 1.4284 9 6 5.5315 0.5095 2.0040 10 6 4.1515 0.4455 1.9659 11 7 2.0184 -0.6907 -1.1961 12 6 2.1471 -0.0184 -2.3571 13 8 1.8589 1.1591 -2.4116 14 6 2.6448 -0.7232 -3.5775 15 8 3.0422 -1.8670 -3.4980 16 7 2.6522 -0.0883 -4.7664 17 6 2.0024 1.2205 -4.9201 18 6 1.0161 1.1502 -6.0902 19 6 1.7490 0.6581 -7.3407 20 6 2.3081 -0.7445 -7.0913 21 1 1.4926 -1.4213 -6.8365 22 6 3.0022 -1.2378 -8.3347 23 1 3.5396 -0.5441 -8.9644 24 6 2.9511 -2.5745 -8.6685 25 7 3.4702 -2.9891 -9.8035 26 14 2.1445 -3.7966 -7.5086 27 1 0.7291 -3.9994 -7.9094 28 1 2.8678 -5.0920 -7.5734 29 1 2.1956 -3.2700 -6.1211 30 6 3.3097 -0.6921 -5.9333 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6054 -0.2616 2.1370 35 1 1.7516 -1.7715 1.2057 36 1 3.9065 -2.4203 0.2116 37 1 6.3549 -2.1881 0.3389 38 1 6.0138 1.3324 2.5103 39 1 3.5552 1.2119 2.4388 40 1 2.2491 -1.6319 -1.1525 41 1 1.4665 1.4722 -4.0050 42 1 2.7564 1.9812 -5.1230 43 1 0.2111 0.4569 -5.8462 44 1 0.6003 2.1406 -6.2754 45 1 2.5677 1.3397 -7.5711 46 1 1.0543 0.6280 -8.1801 47 1 3.4345 -3.9296 -10.0381 48 1 4.1700 -0.0879 -6.2213 49 1 3.6385 -1.7014 -5.6859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328392562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:34 Heat of formation + Delta-G solvation = -32.887653 kcal Electronic energy + Delta-G solvation = -30861.766012 eV Core-core repulsion = 26788.804595 eV Total energy + Delta-G solvation = -4072.961417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.93978 -40.36237 -38.76189 -37.14622 -36.69348 -33.67224 -33.16887 -31.89103 -31.51578 -31.22360 -30.50747 -27.55794 -26.22040 -25.17810 -23.79517 -23.62708 -22.47811 -21.86932 -21.10685 -20.31676 -19.00893 -17.55148 -17.14371 -16.97200 -16.75331 -16.48442 -15.93447 -15.86519 -15.74585 -14.93441 -14.50861 -14.27920 -14.15822 -14.02729 -13.96600 -13.72098 -13.62195 -13.27185 -13.21096 -12.80920 -12.72101 -12.55192 -12.46519 -12.21831 -12.11904 -11.81646 -11.67244 -11.49671 -11.14947 -10.73871 -10.65178 -10.48850 -10.09234 -9.88767 -9.75787 -9.72502 -9.54965 -9.47885 -9.37541 -9.22970 -8.80280 -8.65688 -8.13583 -6.13849 -4.14855 0.86313 0.93303 1.56282 2.45346 3.28697 3.36824 3.39324 3.49703 3.51595 3.67392 4.10147 4.22463 4.34973 4.38044 4.40685 4.50815 4.74029 4.82941 4.86742 4.89579 5.08866 5.17021 5.19552 5.31009 5.37874 5.43742 5.49312 5.49623 5.57009 5.68739 5.70234 5.84505 5.91477 5.99014 6.04489 6.17759 6.22712 6.36010 6.42238 6.46681 6.54659 6.63380 6.76525 6.82309 7.02420 7.24306 7.32498 7.62798 7.71212 7.71977 7.83938 8.23747 8.46189 8.91562 9.49350 10.98494 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.002998 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.866348 B = 9335.848663 C =10046.126220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 H 0.095 0.905 4 C -0.092 4.092 5 C -0.041 4.041 6 C -0.165 4.165 7 C 0.104 3.896 8 N -0.488 5.488 9 C 0.098 3.902 10 C -0.171 4.171 11 N -0.699 5.699 12 C 0.513 3.487 13 O -0.513 6.513 14 C 0.494 3.506 15 O -0.531 6.531 16 N -0.570 5.570 17 C 0.072 3.928 18 C -0.137 4.137 19 C -0.106 4.106 20 C 0.009 3.991 21 H 0.035 0.965 22 C -0.514 4.514 23 H 0.076 0.924 24 C 0.076 3.924 25 N -0.895 5.895 26 Si 0.867 3.133 27 H -0.279 1.279 28 H -0.287 1.287 29 H -0.252 1.252 30 C 0.107 3.893 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.134 0.866 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.134 0.866 40 H 0.410 0.590 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.265 0.735 48 H 0.067 0.933 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.685 6.901 25.741 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 H 0.113 0.887 4 C -0.129 4.129 5 C -0.049 4.049 6 C -0.184 4.184 7 C -0.053 4.053 8 N -0.197 5.197 9 C -0.058 4.058 10 C -0.191 4.191 11 N -0.353 5.353 12 C 0.295 3.705 13 O -0.390 6.390 14 C 0.276 3.724 15 O -0.409 6.409 16 N -0.302 5.302 17 C -0.050 4.050 18 C -0.175 4.175 19 C -0.144 4.144 20 C -0.011 4.011 21 H 0.053 0.947 22 C -0.552 4.552 23 H 0.094 0.906 24 C -0.127 4.127 25 N -0.532 5.532 26 Si 0.694 3.306 27 H -0.205 1.205 28 H -0.213 1.213 29 H -0.176 1.176 30 C -0.014 4.014 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.247 0.753 41 H 0.145 0.855 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.715 7.046 25.645 26.854 hybrid contribution -1.125 -1.269 0.301 1.722 sum -4.839 5.778 25.946 27.019 Atomic orbital electron populations 1.22202 0.94184 1.02761 1.03159 1.21024 0.94432 0.97654 0.82752 0.88730 1.21007 0.90752 1.02731 0.98434 1.20212 0.95909 0.93959 0.94835 1.22097 0.95197 1.00332 1.00820 1.22819 0.92915 0.95079 0.94465 1.67695 1.41163 1.02474 1.08365 1.22768 0.90807 0.96621 0.95640 1.22033 0.96415 0.99087 1.01540 1.45917 1.65734 1.14846 1.08835 1.20567 0.77931 0.86994 0.84963 1.90479 1.49273 1.15774 1.83489 1.19926 0.81320 0.86578 0.84593 1.90737 1.48225 1.16490 1.85404 1.48443 1.52105 1.20641 1.09023 1.22743 0.96580 0.83359 1.02296 1.22024 0.98176 1.00884 0.96412 1.21598 0.99132 0.98102 0.95544 1.19451 0.94369 0.93755 0.93518 0.94700 1.20894 1.33979 0.94179 1.06157 0.90613 1.25075 0.94636 0.98345 0.94668 1.69905 1.45331 1.16020 1.21910 0.86986 0.79510 0.81015 0.83115 1.20517 1.21313 1.17586 1.22712 0.96707 0.98714 0.83235 0.91170 0.91419 0.91997 0.88492 0.89529 0.84776 0.82607 0.82839 0.84817 0.75319 0.85463 0.91769 0.92457 0.91578 0.92750 0.92170 0.92525 0.91478 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 2 C 0.15 1.17 2.56 -67.93 -0.17 0.99 16 3 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 4 C -0.09 -0.53 4.94 -27.88 -0.14 -0.66 16 5 C -0.04 -0.33 4.97 -104.32 -0.52 -0.85 16 6 C -0.16 -1.49 9.27 -39.44 -0.37 -1.86 16 7 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 8 N -0.49 -5.57 10.36 -13.25 -0.14 -5.71 16 9 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 10 C -0.17 -1.33 9.82 -39.44 -0.39 -1.72 16 11 N -0.70 -7.61 4.55 -54.24 -0.25 -7.85 16 12 C 0.51 7.47 7.71 -11.58 -0.09 7.38 16 13 O -0.51 -7.82 12.84 5.50 0.07 -7.75 16 14 C 0.49 8.93 7.73 -11.58 -0.09 8.84 16 15 O -0.53 -10.74 15.93 5.50 0.09 -10.65 16 16 N -0.57 -10.72 2.97 -173.27 -0.52 -11.23 16 17 C 0.07 1.16 5.98 -3.71 -0.02 1.14 16 18 C -0.14 -2.20 6.09 -26.59 -0.16 -2.36 16 19 C -0.11 -2.06 5.14 -26.67 -0.14 -2.19 16 20 C 0.01 0.20 1.79 -91.65 -0.16 0.04 16 21 H 0.03 0.84 5.60 -51.93 -0.29 0.55 16 22 C -0.51 -14.03 8.86 -34.44 -0.31 -14.33 16 23 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 24 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 25 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 26 Si 0.87 21.75 26.62 -169.99 -4.53 17.23 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.25 -6.30 5.99 56.52 0.34 -5.96 16 30 C 0.11 2.31 5.53 -3.71 -0.02 2.29 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.37 8.10 -51.93 -0.42 -0.05 16 35 H 0.09 0.42 8.10 -51.93 -0.42 0.00 16 36 H 0.13 1.04 7.68 -52.49 -0.40 0.63 16 37 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.41 4.20 7.44 -40.82 -0.30 3.90 16 41 H 0.13 1.98 4.31 -54.82 -0.24 1.74 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 48 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 49 H 0.08 2.01 5.89 -51.93 -0.31 1.70 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -33.51 393.67 -8.74 -42.25 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.47 Total: 4.52 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.71 Total: -0.47 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.13 Total: -51.06 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.16 Total: -18.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.53 Total: 17.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.51 -8.74 -42.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328392562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.367 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds