Wall clock time and date at job start Wed Apr 1 2020 04:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08990 * 109.46981 * 2 1 4 4 C 1.53000 * 109.46946 * 119.99799 * 2 1 3 5 5 C 1.50702 * 109.47104 * 184.99968 * 4 2 1 6 6 C 1.38652 * 120.78849 * 269.72019 * 5 4 2 7 7 C 1.38208 * 119.15730 * 179.75535 * 6 5 4 8 8 N 1.31868 * 120.76702 * 0.52937 * 7 6 5 9 9 C 1.31872 * 121.72672 * 359.74393 * 8 7 6 10 10 C 1.38202 * 120.76139 * 359.97438 * 9 8 7 11 11 N 1.46496 * 109.47273 * 239.99411 * 2 1 3 12 12 C 1.34783 * 119.99760 * 84.99750 * 11 2 1 13 13 O 1.21347 * 120.00173 * 0.02562 * 12 11 2 14 14 C 1.49452 * 119.99843 * 180.02562 * 12 11 2 15 15 O 1.21352 * 120.00368 * 353.61880 * 14 12 11 16 16 N 1.34782 * 119.99853 * 173.61935 * 14 12 11 17 17 C 1.46928 * 120.62748 * 351.27341 * 16 14 12 18 18 C 1.53194 * 108.88949 * 233.55808 * 17 16 14 19 19 C 1.53076 * 109.29729 * 305.57898 * 18 17 16 20 20 C 1.53049 * 109.65421 * 61.15586 * 19 18 17 21 21 H 1.08993 * 109.49658 * 58.64882 * 20 19 18 22 22 C 1.50701 * 109.49522 * 178.74764 * 20 19 18 23 23 H 1.08007 * 119.99833 * 35.00093 * 22 20 19 24 24 C 1.37871 * 120.00283 * 215.00448 * 22 20 19 25 25 N 1.31515 * 120.00254 * 174.90710 * 24 22 20 26 26 Si 1.86803 * 119.99766 * 354.90688 * 24 22 20 27 27 H 1.48505 * 109.46943 * 94.66596 * 26 24 22 28 28 H 1.48502 * 109.47165 * 214.66397 * 26 24 22 29 29 H 1.48499 * 109.47042 * 334.66671 * 26 24 22 30 30 C 1.46927 * 120.62789 * 171.29506 * 16 14 12 31 31 H 1.08990 * 109.47000 * 300.00136 * 1 2 3 32 32 H 1.08999 * 109.46689 * 60.00418 * 1 2 3 33 33 H 1.09004 * 109.46843 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46994 * 304.99994 * 4 2 1 35 35 H 1.09001 * 109.47258 * 64.99820 * 4 2 1 36 36 H 1.07996 * 120.41612 * 359.97438 * 6 5 4 37 37 H 1.07997 * 119.61523 * 180.29360 * 7 6 5 38 38 H 1.07994 * 119.62350 * 180.02562 * 9 8 7 39 39 H 1.08007 * 120.42023 * 180.02562 * 10 9 8 40 40 H 0.97003 * 120.00656 * 265.00336 * 11 2 1 41 41 H 1.08999 * 109.58763 * 353.41653 * 17 16 14 42 42 H 1.09002 * 109.58608 * 113.70289 * 17 16 14 43 43 H 1.09000 * 109.49616 * 65.38970 * 18 17 16 44 44 H 1.09001 * 109.49449 * 185.48666 * 18 17 16 45 45 H 1.08994 * 109.34804 * 301.13289 * 19 18 17 46 46 H 1.08997 * 109.44206 * 181.23101 * 19 18 17 47 47 H 0.96998 * 119.99577 * 179.97438 * 25 24 22 48 48 H 1.08997 * 109.58731 * 246.15282 * 30 16 14 49 49 H 1.08994 * 109.59038 * 6.44379 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.6149 1.3128 6 6 4.3471 -1.5782 0.7244 7 6 5.7207 -1.4446 0.7987 8 7 6.2660 -0.4223 1.4284 9 6 5.5315 0.5095 2.0040 10 6 4.1515 0.4455 1.9659 11 7 2.0184 -0.6907 -1.1961 12 6 2.1471 -0.0184 -2.3571 13 8 1.8589 1.1591 -2.4116 14 6 2.6448 -0.7232 -3.5775 15 8 3.0422 -1.8670 -3.4980 16 7 2.6522 -0.0883 -4.7664 17 6 2.0024 1.2205 -4.9201 18 6 1.0161 1.1502 -6.0902 19 6 1.7490 0.6581 -7.3407 20 6 2.3081 -0.7445 -7.0913 21 1 1.4926 -1.4213 -6.8365 22 6 3.0022 -1.2378 -8.3347 23 1 3.5396 -0.5441 -8.9644 24 6 2.9511 -2.5745 -8.6685 25 7 3.4702 -2.9891 -9.8035 26 14 2.1445 -3.7966 -7.5086 27 1 0.7291 -3.9994 -7.9094 28 1 2.8678 -5.0920 -7.5734 29 1 2.1956 -3.2700 -6.1211 30 6 3.3097 -0.6921 -5.9333 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6054 -0.2616 2.1370 35 1 1.7516 -1.7715 1.2057 36 1 3.9065 -2.4203 0.2116 37 1 6.3549 -2.1881 0.3389 38 1 6.0138 1.3324 2.5103 39 1 3.5552 1.2119 2.4388 40 1 2.2491 -1.6319 -1.1525 41 1 1.4665 1.4722 -4.0050 42 1 2.7564 1.9812 -5.1230 43 1 0.2111 0.4569 -5.8462 44 1 0.6003 2.1406 -6.2754 45 1 2.5677 1.3397 -7.5711 46 1 1.0543 0.6280 -8.1801 47 1 3.4345 -3.9296 -10.0381 48 1 4.1700 -0.0879 -6.2213 49 1 3.6385 -1.7014 -5.6859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328392562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:33 Heat of formation + Delta-G solvation = -55.279597 kcal Electronic energy + Delta-G solvation = -30862.736999 eV Core-core repulsion = 26788.804595 eV Total energy + Delta-G solvation = -4073.932405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.08725 -41.13514 -39.99892 -38.62440 -37.59155 -35.26030 -34.28062 -33.56202 -32.23408 -32.16900 -31.95196 -28.09616 -27.75909 -26.92004 -24.84897 -24.41104 -23.45778 -23.27118 -21.89133 -21.60022 -20.55467 -19.19075 -18.54252 -18.16137 -17.60834 -17.41618 -17.11086 -16.85386 -16.53660 -16.31514 -16.01710 -15.71948 -15.20914 -15.06673 -14.91953 -14.86609 -14.72468 -14.56759 -14.41831 -14.17346 -13.93994 -13.77491 -13.44132 -13.19061 -13.13127 -12.96153 -12.70806 -12.59695 -12.36536 -12.34257 -12.05673 -12.04878 -11.70792 -11.65713 -11.27168 -11.16160 -10.80264 -10.59601 -10.45919 -10.28727 -10.14521 -10.06875 -9.69733 -8.35885 -6.39113 0.20772 0.28744 0.30804 1.24879 1.29388 1.33856 1.46763 2.07501 2.28901 2.47375 2.84631 3.01603 3.25112 3.54809 3.61724 3.81549 3.87207 4.01270 4.12990 4.17797 4.19383 4.24059 4.27666 4.31928 4.43299 4.50623 4.58847 4.65379 4.69696 4.74583 4.81033 4.87388 4.89922 4.92409 4.97823 5.02060 5.04648 5.09499 5.19085 5.26526 5.33255 5.35025 5.46833 5.53681 5.59748 5.65253 5.80448 5.97346 6.24550 6.31540 6.65210 6.71685 6.89841 7.04514 7.27685 8.80460 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.002998 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.866348 B = 9335.848663 C =10046.126220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.087 0.913 4 C -0.083 4.083 5 C -0.045 4.045 6 C -0.174 4.174 7 C 0.078 3.922 8 N -0.522 5.522 9 C 0.081 3.919 10 C -0.167 4.167 11 N -0.684 5.684 12 C 0.520 3.480 13 O -0.520 6.520 14 C 0.487 3.513 15 O -0.558 6.558 16 N -0.578 5.578 17 C 0.073 3.927 18 C -0.127 4.127 19 C -0.103 4.103 20 C 0.009 3.991 21 H 0.025 0.975 22 C -0.512 4.512 23 H 0.043 0.957 24 C 0.022 3.978 25 N -0.941 5.941 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.287 1.287 29 H -0.253 1.253 30 C 0.117 3.883 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.173 0.827 39 H 0.165 0.835 40 H 0.414 0.586 41 H 0.142 0.858 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.102 0.898 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.267 0.733 48 H 0.066 0.934 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 8.169 29.072 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.120 4.120 5 C -0.054 4.054 6 C -0.194 4.194 7 C -0.078 4.078 8 N -0.231 5.231 9 C -0.075 4.075 10 C -0.186 4.186 11 N -0.336 5.336 12 C 0.301 3.699 13 O -0.398 6.398 14 C 0.270 3.730 15 O -0.438 6.438 16 N -0.309 5.309 17 C -0.048 4.048 18 C -0.165 4.165 19 C -0.141 4.141 20 C -0.011 4.011 21 H 0.044 0.956 22 C -0.550 4.550 23 H 0.061 0.939 24 C -0.176 4.176 25 N -0.581 5.581 26 Si 0.755 3.245 27 H -0.194 1.194 28 H -0.213 1.213 29 H -0.177 1.177 30 C -0.005 4.005 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.161 0.839 37 H 0.175 0.825 38 H 0.190 0.810 39 H 0.182 0.818 40 H 0.251 0.749 41 H 0.159 0.841 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.206 8.328 29.020 30.823 hybrid contribution -0.306 -1.590 -0.693 1.761 sum -6.512 6.738 28.327 29.837 Atomic orbital electron populations 1.22176 0.92881 1.03350 1.03454 1.21273 0.95310 0.97194 0.82062 0.89510 1.21054 0.88937 1.03724 0.98258 1.20531 0.97188 0.93489 0.94149 1.22271 0.94861 1.01136 1.01082 1.22996 0.93939 0.95473 0.95357 1.67657 1.42499 1.03456 1.09532 1.23221 0.91883 0.96743 0.95671 1.22384 0.96066 0.99447 1.00745 1.45990 1.64098 1.15007 1.08542 1.19814 0.78592 0.86731 0.84764 1.90462 1.50186 1.15719 1.83477 1.20636 0.80550 0.86360 0.85491 1.90715 1.49224 1.17858 1.85989 1.48426 1.52388 1.21553 1.08575 1.22946 0.96760 0.82111 1.02963 1.21976 0.97622 1.02653 0.94237 1.21506 0.99373 0.95821 0.97404 1.19397 0.93954 0.95707 0.92052 0.95635 1.21167 1.33019 0.93591 1.07227 0.93910 1.25808 0.95595 1.00239 0.95949 1.70026 1.47658 1.16530 1.23860 0.85994 0.78970 0.78644 0.80939 1.19371 1.21295 1.17689 1.22178 0.96361 0.97708 0.84230 0.88473 0.93540 0.91280 0.85337 0.88138 0.83935 0.82508 0.80980 0.81771 0.74865 0.84081 0.90853 0.92527 0.88012 0.92621 0.92648 0.92398 0.91580 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 71.98 0.68 -0.93 16 2 C 0.14 1.78 2.56 44.99 0.12 1.90 16 3 H 0.09 1.29 7.58 -2.39 -0.02 1.27 16 4 C -0.08 -0.60 4.94 29.85 0.15 -0.45 16 5 C -0.05 -0.60 4.97 -19.67 -0.10 -0.70 16 6 C -0.17 -2.94 9.27 22.36 0.21 -2.74 16 7 C 0.08 1.63 11.18 84.68 0.95 2.58 16 8 N -0.52 -11.88 10.36 -195.85 -2.03 -13.91 16 9 C 0.08 1.38 11.18 84.68 0.95 2.33 16 10 C -0.17 -2.13 9.82 22.36 0.22 -1.91 16 11 N -0.68 -13.16 4.55 -443.86 -2.02 -15.18 16 12 C 0.52 14.09 7.71 87.27 0.67 14.76 16 13 O -0.52 -14.50 12.84 -3.24 -0.04 -14.54 16 14 C 0.49 17.12 7.73 87.27 0.67 17.79 16 15 O -0.56 -22.46 15.93 -3.25 -0.05 -22.51 16 16 N -0.58 -21.16 2.97 -820.47 -2.44 -23.60 16 17 C 0.07 2.18 5.98 86.36 0.52 2.69 16 18 C -0.13 -3.75 6.09 30.68 0.19 -3.56 16 19 C -0.10 -3.91 5.14 30.64 0.16 -3.75 16 20 C 0.01 0.40 1.79 -11.46 -0.02 0.38 16 21 H 0.03 1.22 5.60 -2.39 -0.01 1.21 16 22 C -0.51 -28.78 8.86 25.60 0.23 -28.55 16 23 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 24 C 0.02 1.31 5.47 84.65 0.46 1.78 16 25 N -0.94 -58.72 13.96 21.44 0.30 -58.42 16 26 Si 0.93 46.03 26.62 68.60 1.83 47.85 16 27 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 29 H -0.25 -12.46 5.99 99.48 0.60 -11.86 16 30 C 0.12 5.11 5.53 86.36 0.48 5.59 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.13 0.23 8.10 -2.39 -0.02 0.21 16 35 H 0.10 0.53 8.10 -2.39 -0.02 0.51 16 36 H 0.14 2.04 7.68 -2.91 -0.02 2.02 16 37 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 38 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.41 7.56 7.44 -92.71 -0.69 6.87 16 41 H 0.14 3.97 4.31 -48.19 -0.21 3.76 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.10 2.34 8.14 -2.39 -0.02 2.33 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 48 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 49 H 0.06 2.87 5.89 -2.39 -0.01 2.85 16 Total: -1.00 -75.56 393.67 2.03 -73.53 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.03 Total: 19.59 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.52 Total: 7.20 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -6.19 Total: -111.11 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.09 Total: -37.05 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.83 Total: 47.85 kcal Total: -75.56 2.03 -73.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328392562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.251 kcal (2) G-P(sol) polarization free energy of solvation -75.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds