Wall clock time and date at job start Wed Apr 1 2020 03:34:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.46812 * 2 1
4 4 C 1.50693 * 109.47424 * 120.00204 * 2 1 3
5 5 C 1.38227 * 119.61994 * 275.00163 * 4 2 1
6 6 C 1.38628 * 119.16534 * 179.97438 * 5 4 2
7 7 C 1.38673 * 118.41944 * 359.97438 * 6 5 4
8 8 C 1.38186 * 119.15987 * 359.97438 * 7 6 5
9 9 N 1.31849 * 119.62007 * 94.72558 * 4 2 1
10 10 N 1.46504 * 109.47344 * 240.00534 * 2 1 3
11 11 C 1.46501 * 119.99401 * 299.99858 * 10 2 1
12 12 C 1.34772 * 120.00337 * 119.99366 * 10 2 1
13 13 O 1.21345 * 120.00210 * 4.91307 * 12 10 2
14 14 C 1.49450 * 120.00143 * 184.91213 * 12 10 2
15 15 O 1.21346 * 120.00024 * 84.20899 * 14 12 10
16 16 N 1.34776 * 120.00188 * 264.21240 * 14 12 10
17 17 C 1.46928 * 120.62708 * 355.51653 * 16 14 12
18 18 C 1.53628 * 108.54472 * 126.37047 * 17 16 14
19 19 C 1.53036 * 109.23989 * 54.85360 * 18 17 16
20 20 C 1.53044 * 109.53766 * 298.51036 * 19 18 17
21 21 H 1.08998 * 109.49878 * 301.41285 * 20 19 18
22 22 C 1.50697 * 109.52081 * 181.33699 * 20 19 18
23 23 H 1.08001 * 120.00704 * 0.14885 * 22 20 19
24 24 C 1.37884 * 119.99714 * 180.14320 * 22 20 19
25 25 N 1.31517 * 119.99879 * 179.97438 * 24 22 20
26 26 Si 1.86792 * 120.00108 * 0.02562 * 24 22 20
27 27 H 1.48493 * 109.47518 * 89.99568 * 26 24 22
28 28 H 1.48502 * 109.46930 * 209.99881 * 26 24 22
29 29 H 1.48508 * 109.47016 * 329.99164 * 26 24 22
30 30 C 1.46923 * 120.63345 * 175.79366 * 16 14 12
31 31 H 1.08998 * 109.46812 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.47352 * 299.99671 * 1 2 3
33 33 H 1.08999 * 109.47517 * 59.99617 * 1 2 3
34 34 H 1.08003 * 120.42003 * 359.95116 * 5 4 2
35 35 H 1.07998 * 120.78992 * 180.02562 * 6 5 4
36 36 H 1.07993 * 120.42089 * 180.02562 * 7 6 5
37 37 H 1.08000 * 119.61275 * 180.02562 * 8 7 6
38 38 H 1.08999 * 109.47315 * 88.02431 * 11 10 2
39 39 H 1.09004 * 109.47065 * 208.01769 * 11 10 2
40 40 H 1.08996 * 109.47322 * 328.01646 * 11 10 2
41 41 H 1.09002 * 109.58483 * 246.19960 * 17 16 14
42 42 H 1.09000 * 109.58858 * 6.62423 * 17 16 14
43 43 H 1.08996 * 109.62793 * 294.85906 * 18 17 16
44 44 H 1.09001 * 109.42781 * 174.72102 * 18 17 16
45 45 H 1.09001 * 109.45568 * 178.49636 * 19 18 17
46 46 H 1.08993 * 109.45296 * 58.52529 * 19 18 17
47 47 H 0.96993 * 120.00275 * 180.02562 * 25 24 22
48 48 H 1.09004 * 109.58565 * 353.37051 * 30 16 14
49 49 H 1.08998 * 109.58483 * 113.65221 * 30 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 6 2.1613 -0.0133 2.4170
6 6 2.6239 -0.6762 3.5432
7 6 2.9404 -2.0219 3.4334
8 6 2.7847 -2.6529 2.2139
9 7 2.3386 -1.9911 1.1640
10 7 2.0184 -0.6905 -1.1962
11 6 1.6644 -2.0931 -1.4281
12 6 2.7931 -0.0355 -2.0834
13 8 3.1599 1.0971 -1.8486
14 6 3.2006 -0.7040 -3.3564
15 8 2.4570 -0.6878 -4.3152
16 7 4.3939 -1.3249 -3.4396
17 6 5.3458 -1.2699 -2.3217
18 6 5.7452 -2.7057 -1.9489
19 6 6.2779 -3.4202 -3.1930
20 6 5.1780 -3.4869 -4.2552
21 1 4.3138 -4.0141 -3.8513
22 6 5.6926 -4.2193 -5.4675
23 1 6.7025 -4.6018 -5.4792
24 6 4.8739 -4.4012 -6.5620
25 7 5.3230 -5.0400 -7.6202
26 14 3.1273 -3.7392 -6.5422
27 1 3.1169 -2.3538 -7.0764
28 1 2.2615 -4.6017 -7.3859
29 1 2.6149 -3.7362 -5.1483
30 6 4.7700 -2.0646 -4.6520
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5138 0.8900
33 1 -0.3634 0.5139 -0.8899
34 1 1.9054 1.0348 2.4661
35 1 2.7343 -0.1573 4.4838
36 1 3.3030 -2.5700 4.2903
37 1 3.0286 -3.7008 2.1203
38 1 0.7195 -2.1448 -1.9689
39 1 2.4466 -2.5727 -2.0167
40 1 1.5640 -2.6054 -0.4713
41 1 6.2302 -0.7081 -2.6223
42 1 4.8763 -0.7856 -1.4655
43 1 4.8755 -3.2401 -1.5667
44 1 6.5215 -2.6791 -1.1842
45 1 6.5873 -4.4308 -2.9268
46 1 7.1322 -2.8712 -3.5890
47 1 4.7473 -5.1677 -8.3903
48 1 3.9204 -2.1050 -5.3337
49 1 5.6067 -1.5649 -5.1401
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001329647698.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:34:12
Heat of formation + Delta-G solvation = -12.197749 kcal
Electronic energy + Delta-G solvation = -32038.790627 eV
Core-core repulsion = 27966.726391 eV
Total energy + Delta-G solvation = -4072.064236 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-41.12416 -40.32896 -38.69879 -37.01747 -36.32899 -33.48156 -32.86168 -32.74416
-32.00000 -30.61676 -30.01429 -27.01274 -26.29675 -25.24678 -24.61271 -23.88267
-23.03323 -22.08787 -21.00338 -19.43769 -18.72222 -17.62165 -17.34790 -17.11117
-16.76815 -16.43922 -16.08916 -15.69628 -15.08039 -14.75101 -14.58664 -14.32760
-14.24735 -13.98898 -13.84613 -13.72238 -13.51750 -13.14710 -13.02844 -12.85489
-12.63285 -12.57142 -12.48021 -12.26471 -12.12114 -12.06698 -11.52596 -11.37959
-11.19866 -11.09561 -10.62519 -10.46114 -10.23494 -10.14328 -9.82148 -9.77387
-9.48467 -9.34831 -9.21730 -9.06068 -8.74752 -8.63698 -8.21683 -6.13287
-4.15055 0.72513 0.91816 2.22748 2.29709 2.87192 3.35318 3.38988
3.43134 3.51632 3.55268 3.82718 4.29881 4.38599 4.40087 4.51357
4.70851 4.74624 4.85520 4.92521 5.09584 5.11602 5.18604 5.20293
5.28137 5.35753 5.39210 5.47833 5.54275 5.65454 5.70160 5.77826
5.81122 5.85963 5.96326 6.02082 6.06091 6.09782 6.26944 6.36482
6.41969 6.45688 6.56483 6.68244 6.74010 7.07876 7.08697 7.37014
7.59923 7.62489 7.66895 7.83251 8.18040 8.45697 8.90151 9.47878
10.98709
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015082 B = 0.003653 C = 0.003363
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1856.022788 B = 7662.861595 C = 8323.870075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.186 3.814
3 H 0.118 0.882
4 C 0.123 3.877
5 C -0.163 4.163
6 C -0.071 4.071
7 C -0.176 4.176
8 C 0.104 3.896
9 N -0.470 5.470
10 N -0.582 5.582
11 C 0.061 3.939
12 C 0.521 3.479
13 O -0.526 6.526
14 C 0.510 3.490
15 O -0.520 6.520
16 N -0.588 5.588
17 C 0.110 3.890
18 C -0.133 4.133
19 C -0.101 4.101
20 C 0.007 3.993
21 H 0.032 0.968
22 C -0.516 4.516
23 H 0.079 0.921
24 C 0.074 3.926
25 N -0.894 5.894
26 Si 0.876 3.124
27 H -0.272 1.272
28 H -0.294 1.294
29 H -0.264 1.264
30 C 0.101 3.899
31 H 0.066 0.934
32 H 0.071 0.929
33 H 0.071 0.929
34 H 0.136 0.864
35 H 0.135 0.865
36 H 0.135 0.865
37 H 0.159 0.841
38 H 0.051 0.949
39 H 0.070 0.930
40 H 0.118 0.882
41 H 0.074 0.926
42 H 0.070 0.930
43 H 0.064 0.936
44 H 0.066 0.934
45 H 0.062 0.938
46 H 0.058 0.942
47 H 0.266 0.734
48 H 0.080 0.920
49 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.815 7.658 25.176 27.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.081 3.919
3 H 0.136 0.864
4 C -0.016 4.016
5 C -0.184 4.184
6 C -0.097 4.097
7 C -0.196 4.196
8 C -0.052 4.052
9 N -0.179 5.179
10 N -0.315 5.315
11 C -0.082 4.082
12 C 0.304 3.696
13 O -0.401 6.401
14 C 0.292 3.708
15 O -0.395 6.395
16 N -0.322 5.322
17 C -0.013 4.013
18 C -0.171 4.171
19 C -0.138 4.138
20 C -0.012 4.012
21 H 0.050 0.950
22 C -0.554 4.554
23 H 0.097 0.903
24 C -0.129 4.129
25 N -0.531 5.531
26 Si 0.706 3.294
27 H -0.198 1.198
28 H -0.221 1.221
29 H -0.189 1.189
30 C -0.019 4.019
31 H 0.085 0.915
32 H 0.090 0.910
33 H 0.090 0.910
34 H 0.154 0.846
35 H 0.153 0.847
36 H 0.153 0.847
37 H 0.176 0.824
38 H 0.070 0.930
39 H 0.089 0.911
40 H 0.136 0.864
41 H 0.092 0.908
42 H 0.088 0.912
43 H 0.083 0.917
44 H 0.084 0.916
45 H 0.080 0.920
46 H 0.076 0.924
47 H 0.076 0.924
48 H 0.097 0.903
49 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -7.145 7.751 23.779 26.011
hybrid contribution -0.799 0.759 0.690 1.301
sum -7.944 8.511 24.469 27.097
Atomic orbital electron populations
1.22114 0.92803 1.03384 1.03133 1.19989 0.94842 0.96717 0.80317
0.86390 1.21504 0.94993 0.90547 0.94517 1.21852 1.01714 1.01550
0.93250 1.21573 0.94990 0.94498 0.98606 1.22166 1.02088 0.95723
0.99616 1.22891 0.93904 1.00315 0.88131 1.67473 1.11105 1.08309
1.31011 1.47669 1.49929 1.13299 1.20619 1.22368 1.00700 0.80066
1.05036 1.20578 0.78507 0.86721 0.83800 1.90738 1.55258 1.18315
1.75821 1.20061 0.82933 0.79379 0.88446 1.90793 1.52703 1.58631
1.37400 1.48500 1.15312 1.49774 1.18578 1.21844 0.92942 0.98303
0.88223 1.22048 1.01067 0.94833 0.99147 1.21453 0.98880 0.99669
0.93819 1.19488 0.95301 0.90653 0.95807 0.94980 1.20935 1.01314
1.35379 0.97767 0.90320 1.25043 0.98121 0.94383 0.95351 1.69881
1.36800 1.41255 1.05191 0.87033 0.84936 0.78654 0.78784 1.19811
1.22113 1.18882 1.22804 1.00594 0.93939 0.84566 0.91513 0.90984
0.91000 0.84605 0.84719 0.84749 0.82415 0.92993 0.91108 0.86396
0.90806 0.91201 0.91720 0.91567 0.91965 0.92371 0.92437 0.90258
0.90927
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.38 9.18 37.16 0.34 -1.04 16
2 C 0.19 2.06 2.91 -69.09 -0.20 1.86 16
3 H 0.12 1.36 6.88 -51.93 -0.36 1.00 16
4 C 0.12 1.23 5.87 -82.59 -0.49 0.75 16
5 C -0.16 -1.27 9.77 -39.44 -0.39 -1.66 16
6 C -0.07 -0.46 10.18 -39.28 -0.40 -0.86 16
7 C -0.18 -1.15 10.11 -39.44 -0.40 -1.55 16
8 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16
9 N -0.47 -4.91 6.67 -9.48 -0.06 -4.98 16
10 N -0.58 -8.28 2.70 -175.78 -0.47 -8.76 16
11 C 0.06 0.83 8.94 59.85 0.53 1.37 16
12 C 0.52 9.19 5.47 -11.59 -0.06 9.13 16
13 O -0.53 -9.96 16.40 5.50 0.09 -9.87 16
14 C 0.51 10.47 5.66 -11.59 -0.07 10.41 16
15 O -0.52 -12.41 16.53 5.50 0.09 -12.32 16
16 N -0.59 -11.55 2.97 -173.01 -0.51 -12.07 16
17 C 0.11 1.74 6.38 -3.48 -0.02 1.72 16
18 C -0.13 -1.98 6.10 -26.39 -0.16 -2.14 16
19 C -0.10 -1.84 5.11 -26.69 -0.14 -1.98 16
20 C 0.01 0.16 1.84 -91.65 -0.17 -0.01 16
21 H 0.03 0.76 7.21 -51.93 -0.37 0.39 16
22 C -0.52 -14.02 9.15 -34.44 -0.32 -14.34 16
23 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16
24 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16
25 N -0.89 -27.09 13.96 55.43 0.77 -26.31 16
26 Si 0.88 22.83 24.31 -169.99 -4.13 18.70 16
27 H -0.27 -7.23 6.92 56.52 0.39 -6.84 16
28 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16
29 H -0.26 -6.72 6.53 56.52 0.37 -6.35 16
30 C 0.10 2.27 5.09 -3.71 -0.02 2.25 16
31 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16
32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16
35 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16
36 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16
37 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16
38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
39 H 0.07 1.12 6.91 -51.93 -0.36 0.76 16
40 H 0.12 1.42 5.16 -51.93 -0.27 1.15 16
41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
42 H 0.07 1.06 6.29 -51.93 -0.33 0.74 16
43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
47 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16
48 H 0.08 2.00 2.34 -51.93 -0.12 1.88 16
49 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16
LS Contribution 386.72 15.07 5.83 5.83
Total: -1.00 -34.52 386.72 -7.94 -42.45
By element:
Atomic # 1 Polarization: 8.03 SS G_CDS: -7.30 Total: 0.73 kcal
Atomic # 6 Polarization: 8.83 SS G_CDS: -2.24 Total: 6.60 kcal
Atomic # 7 Polarization: -51.84 SS G_CDS: -0.28 Total: -52.12 kcal
Atomic # 8 Polarization: -22.37 SS G_CDS: 0.18 Total: -22.19 kcal
Atomic # 14 Polarization: 22.83 SS G_CDS: -4.13 Total: 18.70 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -34.52 -7.94 -42.45 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329647698.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.255 kcal
(2) G-P(sol) polarization free energy of solvation -34.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.198 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds