Wall clock time and date at job start Wed Apr 1 2020 03:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46812 * 2 1 4 4 C 1.50693 * 109.47424 * 120.00204 * 2 1 3 5 5 C 1.38227 * 119.61994 * 275.00163 * 4 2 1 6 6 C 1.38628 * 119.16534 * 179.97438 * 5 4 2 7 7 C 1.38673 * 118.41944 * 359.97438 * 6 5 4 8 8 C 1.38186 * 119.15987 * 359.97438 * 7 6 5 9 9 N 1.31849 * 119.62007 * 94.72558 * 4 2 1 10 10 N 1.46504 * 109.47344 * 240.00534 * 2 1 3 11 11 C 1.46501 * 119.99401 * 299.99858 * 10 2 1 12 12 C 1.34772 * 120.00337 * 119.99366 * 10 2 1 13 13 O 1.21345 * 120.00210 * 4.91307 * 12 10 2 14 14 C 1.49450 * 120.00143 * 184.91213 * 12 10 2 15 15 O 1.21346 * 120.00024 * 84.20899 * 14 12 10 16 16 N 1.34776 * 120.00188 * 264.21240 * 14 12 10 17 17 C 1.46928 * 120.62708 * 355.51653 * 16 14 12 18 18 C 1.53628 * 108.54472 * 126.37047 * 17 16 14 19 19 C 1.53036 * 109.23989 * 54.85360 * 18 17 16 20 20 C 1.53044 * 109.53766 * 298.51036 * 19 18 17 21 21 H 1.08998 * 109.49878 * 301.41285 * 20 19 18 22 22 C 1.50697 * 109.52081 * 181.33699 * 20 19 18 23 23 H 1.08001 * 120.00704 * 0.14885 * 22 20 19 24 24 C 1.37884 * 119.99714 * 180.14320 * 22 20 19 25 25 N 1.31517 * 119.99879 * 179.97438 * 24 22 20 26 26 Si 1.86792 * 120.00108 * 0.02562 * 24 22 20 27 27 H 1.48493 * 109.47518 * 89.99568 * 26 24 22 28 28 H 1.48502 * 109.46930 * 209.99881 * 26 24 22 29 29 H 1.48508 * 109.47016 * 329.99164 * 26 24 22 30 30 C 1.46923 * 120.63345 * 175.79366 * 16 14 12 31 31 H 1.08998 * 109.46812 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47352 * 299.99671 * 1 2 3 33 33 H 1.08999 * 109.47517 * 59.99617 * 1 2 3 34 34 H 1.08003 * 120.42003 * 359.95116 * 5 4 2 35 35 H 1.07998 * 120.78992 * 180.02562 * 6 5 4 36 36 H 1.07993 * 120.42089 * 180.02562 * 7 6 5 37 37 H 1.08000 * 119.61275 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47315 * 88.02431 * 11 10 2 39 39 H 1.09004 * 109.47065 * 208.01769 * 11 10 2 40 40 H 1.08996 * 109.47322 * 328.01646 * 11 10 2 41 41 H 1.09002 * 109.58483 * 246.19960 * 17 16 14 42 42 H 1.09000 * 109.58858 * 6.62423 * 17 16 14 43 43 H 1.08996 * 109.62793 * 294.85906 * 18 17 16 44 44 H 1.09001 * 109.42781 * 174.72102 * 18 17 16 45 45 H 1.09001 * 109.45568 * 178.49636 * 19 18 17 46 46 H 1.08993 * 109.45296 * 58.52529 * 19 18 17 47 47 H 0.96993 * 120.00275 * 180.02562 * 25 24 22 48 48 H 1.09004 * 109.58565 * 353.37051 * 30 16 14 49 49 H 1.08998 * 109.58483 * 113.65221 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1613 -0.0133 2.4170 6 6 2.6239 -0.6762 3.5432 7 6 2.9404 -2.0219 3.4334 8 6 2.7847 -2.6529 2.2139 9 7 2.3386 -1.9911 1.1640 10 7 2.0184 -0.6905 -1.1962 11 6 1.6644 -2.0931 -1.4281 12 6 2.7931 -0.0355 -2.0834 13 8 3.1599 1.0971 -1.8486 14 6 3.2006 -0.7040 -3.3564 15 8 2.4570 -0.6878 -4.3152 16 7 4.3939 -1.3249 -3.4396 17 6 5.3458 -1.2699 -2.3217 18 6 5.7452 -2.7057 -1.9489 19 6 6.2779 -3.4202 -3.1930 20 6 5.1780 -3.4869 -4.2552 21 1 4.3138 -4.0141 -3.8513 22 6 5.6926 -4.2193 -5.4675 23 1 6.7025 -4.6018 -5.4792 24 6 4.8739 -4.4012 -6.5620 25 7 5.3230 -5.0400 -7.6202 26 14 3.1273 -3.7392 -6.5422 27 1 3.1169 -2.3538 -7.0764 28 1 2.2615 -4.6017 -7.3859 29 1 2.6149 -3.7362 -5.1483 30 6 4.7700 -2.0646 -4.6520 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.9054 1.0348 2.4661 35 1 2.7343 -0.1573 4.4838 36 1 3.3030 -2.5700 4.2903 37 1 3.0286 -3.7008 2.1203 38 1 0.7195 -2.1448 -1.9689 39 1 2.4466 -2.5727 -2.0167 40 1 1.5640 -2.6054 -0.4713 41 1 6.2302 -0.7081 -2.6223 42 1 4.8763 -0.7856 -1.4655 43 1 4.8755 -3.2401 -1.5667 44 1 6.5215 -2.6791 -1.1842 45 1 6.5873 -4.4308 -2.9268 46 1 7.1322 -2.8712 -3.5890 47 1 4.7473 -5.1677 -8.3903 48 1 3.9204 -2.1050 -5.3337 49 1 5.6067 -1.5649 -5.1401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329647698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:12 Heat of formation + Delta-G solvation = -12.197749 kcal Electronic energy + Delta-G solvation = -32038.790627 eV Core-core repulsion = 27966.726391 eV Total energy + Delta-G solvation = -4072.064236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.12416 -40.32896 -38.69879 -37.01747 -36.32899 -33.48156 -32.86168 -32.74416 -32.00000 -30.61676 -30.01429 -27.01274 -26.29675 -25.24678 -24.61271 -23.88267 -23.03323 -22.08787 -21.00338 -19.43769 -18.72222 -17.62165 -17.34790 -17.11117 -16.76815 -16.43922 -16.08916 -15.69628 -15.08039 -14.75101 -14.58664 -14.32760 -14.24735 -13.98898 -13.84613 -13.72238 -13.51750 -13.14710 -13.02844 -12.85489 -12.63285 -12.57142 -12.48021 -12.26471 -12.12114 -12.06698 -11.52596 -11.37959 -11.19866 -11.09561 -10.62519 -10.46114 -10.23494 -10.14328 -9.82148 -9.77387 -9.48467 -9.34831 -9.21730 -9.06068 -8.74752 -8.63698 -8.21683 -6.13287 -4.15055 0.72513 0.91816 2.22748 2.29709 2.87192 3.35318 3.38988 3.43134 3.51632 3.55268 3.82718 4.29881 4.38599 4.40087 4.51357 4.70851 4.74624 4.85520 4.92521 5.09584 5.11602 5.18604 5.20293 5.28137 5.35753 5.39210 5.47833 5.54275 5.65454 5.70160 5.77826 5.81122 5.85963 5.96326 6.02082 6.06091 6.09782 6.26944 6.36482 6.41969 6.45688 6.56483 6.68244 6.74010 7.07876 7.08697 7.37014 7.59923 7.62489 7.66895 7.83251 8.18040 8.45697 8.90151 9.47878 10.98709 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.003653 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.022788 B = 7662.861595 C = 8323.870075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.186 3.814 3 H 0.118 0.882 4 C 0.123 3.877 5 C -0.163 4.163 6 C -0.071 4.071 7 C -0.176 4.176 8 C 0.104 3.896 9 N -0.470 5.470 10 N -0.582 5.582 11 C 0.061 3.939 12 C 0.521 3.479 13 O -0.526 6.526 14 C 0.510 3.490 15 O -0.520 6.520 16 N -0.588 5.588 17 C 0.110 3.890 18 C -0.133 4.133 19 C -0.101 4.101 20 C 0.007 3.993 21 H 0.032 0.968 22 C -0.516 4.516 23 H 0.079 0.921 24 C 0.074 3.926 25 N -0.894 5.894 26 Si 0.876 3.124 27 H -0.272 1.272 28 H -0.294 1.294 29 H -0.264 1.264 30 C 0.101 3.899 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.266 0.734 48 H 0.080 0.920 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 7.658 25.176 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.081 3.919 3 H 0.136 0.864 4 C -0.016 4.016 5 C -0.184 4.184 6 C -0.097 4.097 7 C -0.196 4.196 8 C -0.052 4.052 9 N -0.179 5.179 10 N -0.315 5.315 11 C -0.082 4.082 12 C 0.304 3.696 13 O -0.401 6.401 14 C 0.292 3.708 15 O -0.395 6.395 16 N -0.322 5.322 17 C -0.013 4.013 18 C -0.171 4.171 19 C -0.138 4.138 20 C -0.012 4.012 21 H 0.050 0.950 22 C -0.554 4.554 23 H 0.097 0.903 24 C -0.129 4.129 25 N -0.531 5.531 26 Si 0.706 3.294 27 H -0.198 1.198 28 H -0.221 1.221 29 H -0.189 1.189 30 C -0.019 4.019 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.097 0.903 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.145 7.751 23.779 26.011 hybrid contribution -0.799 0.759 0.690 1.301 sum -7.944 8.511 24.469 27.097 Atomic orbital electron populations 1.22114 0.92803 1.03384 1.03133 1.19989 0.94842 0.96717 0.80317 0.86390 1.21504 0.94993 0.90547 0.94517 1.21852 1.01714 1.01550 0.93250 1.21573 0.94990 0.94498 0.98606 1.22166 1.02088 0.95723 0.99616 1.22891 0.93904 1.00315 0.88131 1.67473 1.11105 1.08309 1.31011 1.47669 1.49929 1.13299 1.20619 1.22368 1.00700 0.80066 1.05036 1.20578 0.78507 0.86721 0.83800 1.90738 1.55258 1.18315 1.75821 1.20061 0.82933 0.79379 0.88446 1.90793 1.52703 1.58631 1.37400 1.48500 1.15312 1.49774 1.18578 1.21844 0.92942 0.98303 0.88223 1.22048 1.01067 0.94833 0.99147 1.21453 0.98880 0.99669 0.93819 1.19488 0.95301 0.90653 0.95807 0.94980 1.20935 1.01314 1.35379 0.97767 0.90320 1.25043 0.98121 0.94383 0.95351 1.69881 1.36800 1.41255 1.05191 0.87033 0.84936 0.78654 0.78784 1.19811 1.22113 1.18882 1.22804 1.00594 0.93939 0.84566 0.91513 0.90984 0.91000 0.84605 0.84719 0.84749 0.82415 0.92993 0.91108 0.86396 0.90806 0.91201 0.91720 0.91567 0.91965 0.92371 0.92437 0.90258 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.18 37.16 0.34 -1.04 16 2 C 0.19 2.06 2.91 -69.09 -0.20 1.86 16 3 H 0.12 1.36 6.88 -51.93 -0.36 1.00 16 4 C 0.12 1.23 5.87 -82.59 -0.49 0.75 16 5 C -0.16 -1.27 9.77 -39.44 -0.39 -1.66 16 6 C -0.07 -0.46 10.18 -39.28 -0.40 -0.86 16 7 C -0.18 -1.15 10.11 -39.44 -0.40 -1.55 16 8 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 9 N -0.47 -4.91 6.67 -9.48 -0.06 -4.98 16 10 N -0.58 -8.28 2.70 -175.78 -0.47 -8.76 16 11 C 0.06 0.83 8.94 59.85 0.53 1.37 16 12 C 0.52 9.19 5.47 -11.59 -0.06 9.13 16 13 O -0.53 -9.96 16.40 5.50 0.09 -9.87 16 14 C 0.51 10.47 5.66 -11.59 -0.07 10.41 16 15 O -0.52 -12.41 16.53 5.50 0.09 -12.32 16 16 N -0.59 -11.55 2.97 -173.01 -0.51 -12.07 16 17 C 0.11 1.74 6.38 -3.48 -0.02 1.72 16 18 C -0.13 -1.98 6.10 -26.39 -0.16 -2.14 16 19 C -0.10 -1.84 5.11 -26.69 -0.14 -1.98 16 20 C 0.01 0.16 1.84 -91.65 -0.17 -0.01 16 21 H 0.03 0.76 7.21 -51.93 -0.37 0.39 16 22 C -0.52 -14.02 9.15 -34.44 -0.32 -14.34 16 23 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 24 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 25 N -0.89 -27.09 13.96 55.43 0.77 -26.31 16 26 Si 0.88 22.83 24.31 -169.99 -4.13 18.70 16 27 H -0.27 -7.23 6.92 56.52 0.39 -6.84 16 28 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 29 H -0.26 -6.72 6.53 56.52 0.37 -6.35 16 30 C 0.10 2.27 5.09 -3.71 -0.02 2.25 16 31 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.12 6.91 -51.93 -0.36 0.76 16 40 H 0.12 1.42 5.16 -51.93 -0.27 1.15 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.06 6.29 -51.93 -0.33 0.74 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.08 2.00 2.34 -51.93 -0.12 1.88 16 49 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -34.52 386.72 -7.94 -42.45 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.30 Total: 0.73 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -2.24 Total: 6.60 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.28 Total: -52.12 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.18 Total: -22.19 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.13 Total: 18.70 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.52 -7.94 -42.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329647698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.255 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds