Wall clock time and date at job start Wed Apr 1 2020 03:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46812 * 2 1 4 4 C 1.50693 * 109.47424 * 120.00204 * 2 1 3 5 5 C 1.38227 * 119.61994 * 275.00163 * 4 2 1 6 6 C 1.38628 * 119.16534 * 179.97438 * 5 4 2 7 7 C 1.38673 * 118.41944 * 359.97438 * 6 5 4 8 8 C 1.38186 * 119.15987 * 359.97438 * 7 6 5 9 9 N 1.31849 * 119.62007 * 94.72558 * 4 2 1 10 10 N 1.46504 * 109.47344 * 240.00534 * 2 1 3 11 11 C 1.46501 * 119.99401 * 299.99858 * 10 2 1 12 12 C 1.34772 * 120.00337 * 119.99366 * 10 2 1 13 13 O 1.21345 * 120.00210 * 4.91307 * 12 10 2 14 14 C 1.49450 * 120.00143 * 184.91213 * 12 10 2 15 15 O 1.21346 * 120.00024 * 84.20899 * 14 12 10 16 16 N 1.34776 * 120.00188 * 264.21240 * 14 12 10 17 17 C 1.46928 * 120.62708 * 355.51653 * 16 14 12 18 18 C 1.53628 * 108.54472 * 126.37047 * 17 16 14 19 19 C 1.53036 * 109.23989 * 54.85360 * 18 17 16 20 20 C 1.53044 * 109.53766 * 298.51036 * 19 18 17 21 21 H 1.08998 * 109.49878 * 301.41285 * 20 19 18 22 22 C 1.50697 * 109.52081 * 181.33699 * 20 19 18 23 23 H 1.08001 * 120.00704 * 0.14885 * 22 20 19 24 24 C 1.37884 * 119.99714 * 180.14320 * 22 20 19 25 25 N 1.31517 * 119.99879 * 179.97438 * 24 22 20 26 26 Si 1.86792 * 120.00108 * 0.02562 * 24 22 20 27 27 H 1.48493 * 109.47518 * 89.99568 * 26 24 22 28 28 H 1.48502 * 109.46930 * 209.99881 * 26 24 22 29 29 H 1.48508 * 109.47016 * 329.99164 * 26 24 22 30 30 C 1.46923 * 120.63345 * 175.79366 * 16 14 12 31 31 H 1.08998 * 109.46812 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47352 * 299.99671 * 1 2 3 33 33 H 1.08999 * 109.47517 * 59.99617 * 1 2 3 34 34 H 1.08003 * 120.42003 * 359.95116 * 5 4 2 35 35 H 1.07998 * 120.78992 * 180.02562 * 6 5 4 36 36 H 1.07993 * 120.42089 * 180.02562 * 7 6 5 37 37 H 1.08000 * 119.61275 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47315 * 88.02431 * 11 10 2 39 39 H 1.09004 * 109.47065 * 208.01769 * 11 10 2 40 40 H 1.08996 * 109.47322 * 328.01646 * 11 10 2 41 41 H 1.09002 * 109.58483 * 246.19960 * 17 16 14 42 42 H 1.09000 * 109.58858 * 6.62423 * 17 16 14 43 43 H 1.08996 * 109.62793 * 294.85906 * 18 17 16 44 44 H 1.09001 * 109.42781 * 174.72102 * 18 17 16 45 45 H 1.09001 * 109.45568 * 178.49636 * 19 18 17 46 46 H 1.08993 * 109.45296 * 58.52529 * 19 18 17 47 47 H 0.96993 * 120.00275 * 180.02562 * 25 24 22 48 48 H 1.09004 * 109.58565 * 353.37051 * 30 16 14 49 49 H 1.08998 * 109.58483 * 113.65221 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1613 -0.0133 2.4170 6 6 2.6239 -0.6762 3.5432 7 6 2.9404 -2.0219 3.4334 8 6 2.7847 -2.6529 2.2139 9 7 2.3386 -1.9911 1.1640 10 7 2.0184 -0.6905 -1.1962 11 6 1.6644 -2.0931 -1.4281 12 6 2.7931 -0.0355 -2.0834 13 8 3.1599 1.0971 -1.8486 14 6 3.2006 -0.7040 -3.3564 15 8 2.4570 -0.6878 -4.3152 16 7 4.3939 -1.3249 -3.4396 17 6 5.3458 -1.2699 -2.3217 18 6 5.7452 -2.7057 -1.9489 19 6 6.2779 -3.4202 -3.1930 20 6 5.1780 -3.4869 -4.2552 21 1 4.3138 -4.0141 -3.8513 22 6 5.6926 -4.2193 -5.4675 23 1 6.7025 -4.6018 -5.4792 24 6 4.8739 -4.4012 -6.5620 25 7 5.3230 -5.0400 -7.6202 26 14 3.1273 -3.7392 -6.5422 27 1 3.1169 -2.3538 -7.0764 28 1 2.2615 -4.6017 -7.3859 29 1 2.6149 -3.7362 -5.1483 30 6 4.7700 -2.0646 -4.6520 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.9054 1.0348 2.4661 35 1 2.7343 -0.1573 4.4838 36 1 3.3030 -2.5700 4.2903 37 1 3.0286 -3.7008 2.1203 38 1 0.7195 -2.1448 -1.9689 39 1 2.4466 -2.5727 -2.0167 40 1 1.5640 -2.6054 -0.4713 41 1 6.2302 -0.7081 -2.6223 42 1 4.8763 -0.7856 -1.4655 43 1 4.8755 -3.2401 -1.5667 44 1 6.5215 -2.6791 -1.1842 45 1 6.5873 -4.4308 -2.9268 46 1 7.1322 -2.8712 -3.5890 47 1 4.7473 -5.1677 -8.3903 48 1 3.9204 -2.1050 -5.3337 49 1 5.6067 -1.5649 -5.1401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329647698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:11 Heat of formation + Delta-G solvation = -34.809684 kcal Electronic energy + Delta-G solvation = -32039.771154 eV Core-core repulsion = 27966.726391 eV Total energy + Delta-G solvation = -4073.044763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.32691 -41.25642 -40.05618 -38.64553 -37.43077 -35.40146 -33.85665 -33.60251 -33.32892 -32.34982 -30.68173 -28.24357 -27.74653 -27.01939 -25.59671 -24.49597 -24.14205 -23.68244 -22.04214 -21.00172 -20.05862 -19.07470 -18.85144 -18.37333 -18.13112 -17.62397 -16.84141 -16.70064 -16.48407 -16.03698 -15.94796 -15.72421 -15.50153 -15.29137 -15.06379 -14.86218 -14.66498 -14.55435 -14.37614 -14.14889 -13.94309 -13.88434 -13.56220 -13.22735 -13.21118 -13.03161 -13.00340 -12.82028 -12.63723 -12.37804 -12.21887 -12.17368 -11.87886 -11.63422 -11.28737 -11.09438 -10.86202 -10.79552 -10.74011 -10.49417 -9.91060 -9.86434 -9.74279 -8.39129 -6.41065 0.16213 0.40256 0.83576 0.87030 1.22583 1.30293 1.38275 1.39165 2.14103 2.21037 2.84957 2.97009 2.98378 3.18719 3.70685 3.77272 3.96623 4.00863 4.01629 4.11811 4.12834 4.16969 4.29188 4.31199 4.32409 4.38856 4.50378 4.52540 4.54698 4.59728 4.65784 4.74008 4.78334 4.87882 4.89356 4.99529 5.04877 5.12081 5.14898 5.18878 5.23477 5.30487 5.33383 5.47708 5.58666 5.63755 5.81241 5.88637 6.03032 6.24893 6.50957 6.59237 6.69176 7.05113 7.24414 8.76829 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.003653 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.022788 B = 7662.861595 C = 8323.870075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.182 3.818 3 H 0.113 0.887 4 C 0.102 3.898 5 C -0.165 4.165 6 C -0.071 4.071 7 C -0.169 4.169 8 C 0.089 3.911 9 N -0.498 5.498 10 N -0.568 5.568 11 C 0.064 3.936 12 C 0.525 3.475 13 O -0.543 6.543 14 C 0.503 3.497 15 O -0.563 6.563 16 N -0.586 5.586 17 C 0.106 3.894 18 C -0.119 4.119 19 C -0.096 4.096 20 C 0.009 3.991 21 H 0.024 0.976 22 C -0.508 4.508 23 H 0.054 0.946 24 C 0.031 3.969 25 N -0.936 5.936 26 Si 0.927 3.073 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.259 1.259 30 C 0.106 3.894 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.172 0.828 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.267 0.733 48 H 0.052 0.948 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.978 8.355 29.539 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.079 3.921 3 H 0.131 0.869 4 C -0.036 4.036 5 C -0.185 4.185 6 C -0.096 4.096 7 C -0.188 4.188 8 C -0.068 4.068 9 N -0.208 5.208 10 N -0.300 5.300 11 C -0.078 4.078 12 C 0.308 3.692 13 O -0.421 6.421 14 C 0.286 3.714 15 O -0.442 6.442 16 N -0.319 5.319 17 C -0.015 4.015 18 C -0.157 4.157 19 C -0.134 4.134 20 C -0.011 4.011 21 H 0.042 0.958 22 C -0.547 4.547 23 H 0.073 0.927 24 C -0.168 4.168 25 N -0.575 5.575 26 Si 0.757 3.243 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.184 1.184 30 C -0.015 4.015 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.189 0.811 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.157 0.843 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.313 8.437 28.212 30.341 hybrid contribution -0.690 0.515 -0.548 1.021 sum -8.003 8.952 27.664 30.158 Atomic orbital electron populations 1.22094 0.91209 1.03545 1.03985 1.20246 0.96094 0.96286 0.79468 0.86898 1.21303 0.96871 0.90860 0.94585 1.22066 1.01193 1.02401 0.92807 1.21964 0.93806 0.94599 0.99267 1.22494 1.00635 0.95964 0.99744 1.23216 0.94106 1.01052 0.88390 1.67288 1.12240 1.08739 1.32494 1.47733 1.48282 1.13326 1.20672 1.22412 0.99731 0.79813 1.05819 1.19995 0.79489 0.86402 0.83333 1.90729 1.56574 1.18735 1.76085 1.20681 0.82584 0.78933 0.89222 1.90756 1.53914 1.60380 1.39135 1.48511 1.15867 1.48924 1.18578 1.22129 0.92659 0.99449 0.87258 1.21963 1.02177 0.93352 0.98166 1.21379 0.97335 1.00680 0.93981 1.19414 0.96423 0.89979 0.95275 0.95779 1.21265 1.00032 1.34397 0.98991 0.92733 1.25596 1.00771 0.94973 0.95440 1.69972 1.38056 1.43428 1.06091 0.86212 0.82105 0.77218 0.78779 1.21239 1.21815 1.18414 1.22403 0.99323 0.94302 0.85482 0.91649 0.88227 0.92027 0.82897 0.81856 0.82116 0.81067 0.93007 0.93290 0.84326 0.89283 0.90023 0.91582 0.87579 0.91540 0.92120 0.92329 0.93019 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.18 71.98 0.66 -1.74 16 2 C 0.18 3.74 2.91 44.24 0.13 3.87 16 3 H 0.11 2.44 6.88 -2.39 -0.02 2.42 16 4 C 0.10 1.79 5.87 42.55 0.25 2.04 16 5 C -0.16 -2.02 9.77 22.36 0.22 -1.80 16 6 C -0.07 -0.62 10.18 22.47 0.23 -0.39 16 7 C -0.17 -1.54 10.11 22.36 0.23 -1.32 16 8 C 0.09 1.19 11.18 84.67 0.95 2.14 16 9 N -0.50 -9.24 6.67 -183.89 -1.23 -10.46 16 10 N -0.57 -15.66 2.70 -828.40 -2.23 -17.89 16 11 C 0.06 1.72 8.94 127.77 1.14 2.86 16 12 C 0.53 18.30 5.47 87.27 0.48 18.77 16 13 O -0.54 -20.23 16.40 -3.23 -0.05 -20.29 16 14 C 0.50 20.74 5.66 87.27 0.49 21.23 16 15 O -0.56 -27.57 16.53 -3.23 -0.05 -27.62 16 16 N -0.59 -22.75 2.97 -819.64 -2.43 -25.18 16 17 C 0.11 3.13 6.38 86.51 0.55 3.69 16 18 C -0.12 -3.18 6.10 30.82 0.19 -2.99 16 19 C -0.10 -3.36 5.11 30.62 0.16 -3.20 16 20 C 0.01 0.39 1.84 -11.46 -0.02 0.37 16 21 H 0.02 1.14 7.21 -2.39 -0.02 1.12 16 22 C -0.51 -28.12 9.15 25.60 0.23 -27.88 16 23 H 0.05 3.24 7.99 -2.91 -0.02 3.21 16 24 C 0.03 1.83 5.45 84.66 0.46 2.29 16 25 N -0.94 -58.22 13.96 21.45 0.30 -57.93 16 26 Si 0.93 48.86 24.31 68.60 1.67 50.53 16 27 H -0.29 -15.52 6.92 99.48 0.69 -14.84 16 28 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 29 H -0.26 -13.28 6.53 99.48 0.65 -12.63 16 30 C 0.11 4.82 5.09 86.36 0.44 5.26 16 31 H 0.06 1.07 7.67 -2.39 -0.02 1.05 16 32 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 37 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.53 6.91 -2.39 -0.02 1.51 16 40 H 0.14 3.15 5.16 -2.39 -0.01 3.14 16 41 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.08 2.28 6.29 -2.39 -0.02 2.26 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 48 H 0.05 2.66 2.34 -2.38 -0.01 2.66 16 49 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -77.65 386.72 3.63 -74.01 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.88 Total: 11.61 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 6.78 Total: 23.22 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -5.59 Total: -111.46 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.11 Total: -47.91 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.67 Total: 50.53 kcal Total: -77.65 3.63 -74.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329647698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.203 kcal (2) G-P(sol) polarization free energy of solvation -77.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds