Wall clock time and date at job start Wed Apr 1 2020 03:34:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.46812 * 2 1
4 4 C 1.50693 * 109.47424 * 120.00204 * 2 1 3
5 5 C 1.38227 * 119.61994 * 275.00163 * 4 2 1
6 6 C 1.38628 * 119.16534 * 179.97438 * 5 4 2
7 7 C 1.38673 * 118.41944 * 359.97438 * 6 5 4
8 8 C 1.38186 * 119.15987 * 359.97438 * 7 6 5
9 9 N 1.31849 * 119.62007 * 94.72558 * 4 2 1
10 10 N 1.46504 * 109.47344 * 240.00534 * 2 1 3
11 11 C 1.46501 * 119.99401 * 299.99858 * 10 2 1
12 12 C 1.34772 * 120.00337 * 119.99366 * 10 2 1
13 13 O 1.21345 * 120.00210 * 4.91307 * 12 10 2
14 14 C 1.49450 * 120.00143 * 184.91213 * 12 10 2
15 15 O 1.21346 * 120.00024 * 84.20899 * 14 12 10
16 16 N 1.34776 * 120.00188 * 264.21240 * 14 12 10
17 17 C 1.46928 * 120.62708 * 355.51653 * 16 14 12
18 18 C 1.53628 * 108.54472 * 126.37047 * 17 16 14
19 19 C 1.53036 * 109.23989 * 54.85360 * 18 17 16
20 20 C 1.53044 * 109.53766 * 298.51036 * 19 18 17
21 21 H 1.08998 * 109.49878 * 301.41285 * 20 19 18
22 22 C 1.50697 * 109.52081 * 181.33699 * 20 19 18
23 23 H 1.08001 * 120.00704 * 0.14885 * 22 20 19
24 24 C 1.37884 * 119.99714 * 180.14320 * 22 20 19
25 25 N 1.31517 * 119.99879 * 179.97438 * 24 22 20
26 26 Si 1.86792 * 120.00108 * 0.02562 * 24 22 20
27 27 H 1.48493 * 109.47518 * 89.99568 * 26 24 22
28 28 H 1.48502 * 109.46930 * 209.99881 * 26 24 22
29 29 H 1.48508 * 109.47016 * 329.99164 * 26 24 22
30 30 C 1.46923 * 120.63345 * 175.79366 * 16 14 12
31 31 H 1.08998 * 109.46812 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.47352 * 299.99671 * 1 2 3
33 33 H 1.08999 * 109.47517 * 59.99617 * 1 2 3
34 34 H 1.08003 * 120.42003 * 359.95116 * 5 4 2
35 35 H 1.07998 * 120.78992 * 180.02562 * 6 5 4
36 36 H 1.07993 * 120.42089 * 180.02562 * 7 6 5
37 37 H 1.08000 * 119.61275 * 180.02562 * 8 7 6
38 38 H 1.08999 * 109.47315 * 88.02431 * 11 10 2
39 39 H 1.09004 * 109.47065 * 208.01769 * 11 10 2
40 40 H 1.08996 * 109.47322 * 328.01646 * 11 10 2
41 41 H 1.09002 * 109.58483 * 246.19960 * 17 16 14
42 42 H 1.09000 * 109.58858 * 6.62423 * 17 16 14
43 43 H 1.08996 * 109.62793 * 294.85906 * 18 17 16
44 44 H 1.09001 * 109.42781 * 174.72102 * 18 17 16
45 45 H 1.09001 * 109.45568 * 178.49636 * 19 18 17
46 46 H 1.08993 * 109.45296 * 58.52529 * 19 18 17
47 47 H 0.96993 * 120.00275 * 180.02562 * 25 24 22
48 48 H 1.09004 * 109.58565 * 353.37051 * 30 16 14
49 49 H 1.08998 * 109.58483 * 113.65221 * 30 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 6 2.1613 -0.0133 2.4170
6 6 2.6239 -0.6762 3.5432
7 6 2.9404 -2.0219 3.4334
8 6 2.7847 -2.6529 2.2139
9 7 2.3386 -1.9911 1.1640
10 7 2.0184 -0.6905 -1.1962
11 6 1.6644 -2.0931 -1.4281
12 6 2.7931 -0.0355 -2.0834
13 8 3.1599 1.0971 -1.8486
14 6 3.2006 -0.7040 -3.3564
15 8 2.4570 -0.6878 -4.3152
16 7 4.3939 -1.3249 -3.4396
17 6 5.3458 -1.2699 -2.3217
18 6 5.7452 -2.7057 -1.9489
19 6 6.2779 -3.4202 -3.1930
20 6 5.1780 -3.4869 -4.2552
21 1 4.3138 -4.0141 -3.8513
22 6 5.6926 -4.2193 -5.4675
23 1 6.7025 -4.6018 -5.4792
24 6 4.8739 -4.4012 -6.5620
25 7 5.3230 -5.0400 -7.6202
26 14 3.1273 -3.7392 -6.5422
27 1 3.1169 -2.3538 -7.0764
28 1 2.2615 -4.6017 -7.3859
29 1 2.6149 -3.7362 -5.1483
30 6 4.7700 -2.0646 -4.6520
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5138 0.8900
33 1 -0.3634 0.5139 -0.8899
34 1 1.9054 1.0348 2.4661
35 1 2.7343 -0.1573 4.4838
36 1 3.3030 -2.5700 4.2903
37 1 3.0286 -3.7008 2.1203
38 1 0.7195 -2.1448 -1.9689
39 1 2.4466 -2.5727 -2.0167
40 1 1.5640 -2.6054 -0.4713
41 1 6.2302 -0.7081 -2.6223
42 1 4.8763 -0.7856 -1.4655
43 1 4.8755 -3.2401 -1.5667
44 1 6.5215 -2.6791 -1.1842
45 1 6.5873 -4.4308 -2.9268
46 1 7.1322 -2.8712 -3.5890
47 1 4.7473 -5.1677 -8.3903
48 1 3.9204 -2.1050 -5.3337
49 1 5.6067 -1.5649 -5.1401
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001329647698.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:34:11
Heat of formation + Delta-G solvation = -34.809684 kcal
Electronic energy + Delta-G solvation = -32039.771154 eV
Core-core repulsion = 27966.726391 eV
Total energy + Delta-G solvation = -4073.044763 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-42.32691 -41.25642 -40.05618 -38.64553 -37.43077 -35.40146 -33.85665 -33.60251
-33.32892 -32.34982 -30.68173 -28.24357 -27.74653 -27.01939 -25.59671 -24.49597
-24.14205 -23.68244 -22.04214 -21.00172 -20.05862 -19.07470 -18.85144 -18.37333
-18.13112 -17.62397 -16.84141 -16.70064 -16.48407 -16.03698 -15.94796 -15.72421
-15.50153 -15.29137 -15.06379 -14.86218 -14.66498 -14.55435 -14.37614 -14.14889
-13.94309 -13.88434 -13.56220 -13.22735 -13.21118 -13.03161 -13.00340 -12.82028
-12.63723 -12.37804 -12.21887 -12.17368 -11.87886 -11.63422 -11.28737 -11.09438
-10.86202 -10.79552 -10.74011 -10.49417 -9.91060 -9.86434 -9.74279 -8.39129
-6.41065 0.16213 0.40256 0.83576 0.87030 1.22583 1.30293 1.38275
1.39165 2.14103 2.21037 2.84957 2.97009 2.98378 3.18719 3.70685
3.77272 3.96623 4.00863 4.01629 4.11811 4.12834 4.16969 4.29188
4.31199 4.32409 4.38856 4.50378 4.52540 4.54698 4.59728 4.65784
4.74008 4.78334 4.87882 4.89356 4.99529 5.04877 5.12081 5.14898
5.18878 5.23477 5.30487 5.33383 5.47708 5.58666 5.63755 5.81241
5.88637 6.03032 6.24893 6.50957 6.59237 6.69176 7.05113 7.24414
8.76829
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015082 B = 0.003653 C = 0.003363
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1856.022788 B = 7662.861595 C = 8323.870075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.182 3.818
3 H 0.113 0.887
4 C 0.102 3.898
5 C -0.165 4.165
6 C -0.071 4.071
7 C -0.169 4.169
8 C 0.089 3.911
9 N -0.498 5.498
10 N -0.568 5.568
11 C 0.064 3.936
12 C 0.525 3.475
13 O -0.543 6.543
14 C 0.503 3.497
15 O -0.563 6.563
16 N -0.586 5.586
17 C 0.106 3.894
18 C -0.119 4.119
19 C -0.096 4.096
20 C 0.009 3.991
21 H 0.024 0.976
22 C -0.508 4.508
23 H 0.054 0.946
24 C 0.031 3.969
25 N -0.936 5.936
26 Si 0.927 3.073
27 H -0.285 1.285
28 H -0.291 1.291
29 H -0.259 1.259
30 C 0.106 3.894
31 H 0.064 0.936
32 H 0.099 0.901
33 H 0.061 0.939
34 H 0.153 0.847
35 H 0.164 0.836
36 H 0.161 0.839
37 H 0.172 0.828
38 H 0.051 0.949
39 H 0.048 0.952
40 H 0.139 0.861
41 H 0.089 0.911
42 H 0.081 0.919
43 H 0.065 0.935
44 H 0.106 0.894
45 H 0.066 0.934
46 H 0.060 0.940
47 H 0.267 0.733
48 H 0.052 0.948
49 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.978 8.355 29.539 31.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.079 3.921
3 H 0.131 0.869
4 C -0.036 4.036
5 C -0.185 4.185
6 C -0.096 4.096
7 C -0.188 4.188
8 C -0.068 4.068
9 N -0.208 5.208
10 N -0.300 5.300
11 C -0.078 4.078
12 C 0.308 3.692
13 O -0.421 6.421
14 C 0.286 3.714
15 O -0.442 6.442
16 N -0.319 5.319
17 C -0.015 4.015
18 C -0.157 4.157
19 C -0.134 4.134
20 C -0.011 4.011
21 H 0.042 0.958
22 C -0.547 4.547
23 H 0.073 0.927
24 C -0.168 4.168
25 N -0.575 5.575
26 Si 0.757 3.243
27 H -0.212 1.212
28 H -0.218 1.218
29 H -0.184 1.184
30 C -0.015 4.015
31 H 0.084 0.916
32 H 0.118 0.882
33 H 0.080 0.920
34 H 0.171 0.829
35 H 0.181 0.819
36 H 0.179 0.821
37 H 0.189 0.811
38 H 0.070 0.930
39 H 0.067 0.933
40 H 0.157 0.843
41 H 0.107 0.893
42 H 0.100 0.900
43 H 0.084 0.916
44 H 0.124 0.876
45 H 0.085 0.915
46 H 0.079 0.921
47 H 0.077 0.923
48 H 0.070 0.930
49 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -7.313 8.437 28.212 30.341
hybrid contribution -0.690 0.515 -0.548 1.021
sum -8.003 8.952 27.664 30.158
Atomic orbital electron populations
1.22094 0.91209 1.03545 1.03985 1.20246 0.96094 0.96286 0.79468
0.86898 1.21303 0.96871 0.90860 0.94585 1.22066 1.01193 1.02401
0.92807 1.21964 0.93806 0.94599 0.99267 1.22494 1.00635 0.95964
0.99744 1.23216 0.94106 1.01052 0.88390 1.67288 1.12240 1.08739
1.32494 1.47733 1.48282 1.13326 1.20672 1.22412 0.99731 0.79813
1.05819 1.19995 0.79489 0.86402 0.83333 1.90729 1.56574 1.18735
1.76085 1.20681 0.82584 0.78933 0.89222 1.90756 1.53914 1.60380
1.39135 1.48511 1.15867 1.48924 1.18578 1.22129 0.92659 0.99449
0.87258 1.21963 1.02177 0.93352 0.98166 1.21379 0.97335 1.00680
0.93981 1.19414 0.96423 0.89979 0.95275 0.95779 1.21265 1.00032
1.34397 0.98991 0.92733 1.25596 1.00771 0.94973 0.95440 1.69972
1.38056 1.43428 1.06091 0.86212 0.82105 0.77218 0.78779 1.21239
1.21815 1.18414 1.22403 0.99323 0.94302 0.85482 0.91649 0.88227
0.92027 0.82897 0.81856 0.82116 0.81067 0.93007 0.93290 0.84326
0.89283 0.90023 0.91582 0.87579 0.91540 0.92120 0.92329 0.93019
0.91104
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.40 9.18 71.98 0.66 -1.74 16
2 C 0.18 3.74 2.91 44.24 0.13 3.87 16
3 H 0.11 2.44 6.88 -2.39 -0.02 2.42 16
4 C 0.10 1.79 5.87 42.55 0.25 2.04 16
5 C -0.16 -2.02 9.77 22.36 0.22 -1.80 16
6 C -0.07 -0.62 10.18 22.47 0.23 -0.39 16
7 C -0.17 -1.54 10.11 22.36 0.23 -1.32 16
8 C 0.09 1.19 11.18 84.67 0.95 2.14 16
9 N -0.50 -9.24 6.67 -183.89 -1.23 -10.46 16
10 N -0.57 -15.66 2.70 -828.40 -2.23 -17.89 16
11 C 0.06 1.72 8.94 127.77 1.14 2.86 16
12 C 0.53 18.30 5.47 87.27 0.48 18.77 16
13 O -0.54 -20.23 16.40 -3.23 -0.05 -20.29 16
14 C 0.50 20.74 5.66 87.27 0.49 21.23 16
15 O -0.56 -27.57 16.53 -3.23 -0.05 -27.62 16
16 N -0.59 -22.75 2.97 -819.64 -2.43 -25.18 16
17 C 0.11 3.13 6.38 86.51 0.55 3.69 16
18 C -0.12 -3.18 6.10 30.82 0.19 -2.99 16
19 C -0.10 -3.36 5.11 30.62 0.16 -3.20 16
20 C 0.01 0.39 1.84 -11.46 -0.02 0.37 16
21 H 0.02 1.14 7.21 -2.39 -0.02 1.12 16
22 C -0.51 -28.12 9.15 25.60 0.23 -27.88 16
23 H 0.05 3.24 7.99 -2.91 -0.02 3.21 16
24 C 0.03 1.83 5.45 84.66 0.46 2.29 16
25 N -0.94 -58.22 13.96 21.45 0.30 -57.93 16
26 Si 0.93 48.86 24.31 68.60 1.67 50.53 16
27 H -0.29 -15.52 6.92 99.48 0.69 -14.84 16
28 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16
29 H -0.26 -13.28 6.53 99.48 0.65 -12.63 16
30 C 0.11 4.82 5.09 86.36 0.44 5.26 16
31 H 0.06 1.07 7.67 -2.39 -0.02 1.05 16
32 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16
33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
34 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16
35 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16
36 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16
37 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16
38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16
39 H 0.05 1.53 6.91 -2.39 -0.02 1.51 16
40 H 0.14 3.15 5.16 -2.39 -0.01 3.14 16
41 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16
42 H 0.08 2.28 6.29 -2.39 -0.02 2.26 16
43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
44 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16
45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
47 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16
48 H 0.05 2.66 2.34 -2.38 -0.01 2.66 16
49 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16
Total: -1.00 -77.65 386.72 3.63 -74.01
By element:
Atomic # 1 Polarization: 10.72 SS G_CDS: 0.88 Total: 11.61 kcal
Atomic # 6 Polarization: 16.44 SS G_CDS: 6.78 Total: 23.22 kcal
Atomic # 7 Polarization: -105.87 SS G_CDS: -5.59 Total: -111.46 kcal
Atomic # 8 Polarization: -47.80 SS G_CDS: -0.11 Total: -47.91 kcal
Atomic # 14 Polarization: 48.86 SS G_CDS: 1.67 Total: 50.53 kcal
Total: -77.65 3.63 -74.01 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001329647698.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.203 kcal
(2) G-P(sol) polarization free energy of solvation -77.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.013 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.810 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds