Wall clock time and date at job start Wed Apr 1 2020 03:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21287 * 120.00091 * 2 1 4 4 N 1.34782 * 119.99862 * 180.02562 * 2 1 3 5 5 C 1.39919 * 119.99738 * 184.62297 * 4 2 1 6 6 C 1.38897 * 120.07261 * 324.88978 * 5 4 2 7 7 C 1.38090 * 119.92976 * 180.02562 * 6 5 4 8 8 C 1.38301 * 120.06991 * 359.73097 * 7 6 5 9 9 C 1.38259 * 120.14502 * 0.54234 * 8 7 6 10 10 C 1.50695 * 119.97060 * 179.72314 * 9 8 7 11 11 C 1.50700 * 109.47659 * 269.73173 * 10 9 8 12 12 O 1.21284 * 119.99789 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00275 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99713 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47477 * 35.00302 * 14 13 11 16 16 C 1.53002 * 109.46848 * 274.99664 * 14 13 11 17 17 C 1.53007 * 109.46830 * 155.00153 * 14 13 11 18 18 C 1.53496 * 114.20556 * 179.97438 * 17 14 13 19 19 N 1.47062 * 87.98544 * 87.71516 * 18 17 14 20 20 C 1.36945 * 136.05785 * 207.08552 * 19 18 17 21 21 H 1.07994 * 119.99936 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99880 * 180.27856 * 20 19 18 23 23 N 1.31619 * 120.00064 * 359.72173 * 22 20 19 24 24 Si 1.86797 * 119.99877 * 179.72358 * 22 20 19 25 25 H 1.48496 * 109.47217 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47086 * 119.99655 * 24 22 20 27 27 H 1.48496 * 109.47127 * 239.99907 * 24 22 20 28 28 C 1.47066 * 87.88504 * 27.34243 * 19 18 17 29 29 C 1.38133 * 120.06517 * 359.45730 * 9 8 7 30 30 H 1.08995 * 109.47055 * 269.99953 * 1 2 3 31 31 H 1.09001 * 109.47482 * 29.99681 * 1 2 3 32 32 H 1.08997 * 109.47357 * 150.00124 * 1 2 3 33 33 H 0.96996 * 120.00191 * 4.61911 * 4 2 1 34 34 H 1.07998 * 120.03419 * 0.04578 * 6 5 4 35 35 H 1.08006 * 119.96176 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.92671 * 180.26971 * 8 7 6 37 37 H 1.08998 * 109.47183 * 149.72443 * 10 9 8 38 38 H 1.09005 * 109.46476 * 29.73098 * 10 9 8 39 39 H 0.97002 * 119.99772 * 359.97438 * 13 11 10 40 40 H 1.08993 * 109.47165 * 60.00675 * 16 14 13 41 41 H 1.09004 * 109.46692 * 180.02562 * 16 14 13 42 42 H 1.08994 * 109.47151 * 300.00046 * 16 14 13 43 43 H 1.08994 * 113.28137 * 46.93263 * 17 14 13 44 44 H 1.08999 * 113.46747 * 332.93609 * 18 17 14 45 45 H 1.08994 * 113.52032 * 202.50721 * 18 17 14 46 46 H 0.97000 * 120.00301 * 180.02562 * 23 22 20 47 47 H 1.08998 * 113.46820 * 87.43937 * 28 19 18 48 48 H 1.09005 * 113.46696 * 217.87611 * 28 19 18 49 49 H 1.07997 * 120.03708 * 180.25122 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5767 -1.1692 0.0971 6 6 4.3178 -0.1596 -0.5033 7 6 5.6952 -0.1647 -0.4055 8 6 6.3365 -1.1707 0.2941 9 6 5.6021 -2.1803 0.8882 10 6 6.3053 -3.2779 1.6442 11 6 6.6215 -4.4127 0.7043 12 8 6.3063 -4.3377 -0.4645 13 7 7.2544 -5.5108 1.1624 14 6 7.5622 -6.6136 0.2485 15 1 7.8043 -6.2129 -0.7359 16 6 6.3484 -7.5385 0.1383 17 6 8.7577 -7.4028 0.7860 18 6 9.1744 -8.5903 -0.0928 19 7 10.0304 -7.6638 -0.8487 20 6 10.5232 -7.5948 -2.1245 21 1 10.2825 -8.3682 -2.8389 22 6 11.3373 -6.5342 -2.4977 23 7 11.6310 -5.5920 -1.6270 24 14 12.0157 -6.4442 -4.2358 25 1 11.5416 -7.6169 -5.0136 26 1 11.5455 -5.1950 -4.8867 27 1 13.4999 -6.4494 -4.1887 28 6 10.1298 -6.8472 0.3704 29 6 4.2240 -2.1809 0.7940 30 1 -0.3633 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6983 -2.0059 -0.0685 34 1 3.8173 0.6288 -1.0458 35 1 6.2721 0.6199 -0.8725 36 1 7.4137 -1.1701 0.3728 37 1 5.6599 -3.6386 2.4451 38 1 7.2308 -2.8903 2.0701 39 1 7.5068 -5.5706 2.0971 40 1 5.4968 -6.9763 -0.2446 41 1 6.5776 -8.3593 -0.5413 42 1 6.1064 -7.9391 1.1227 43 1 8.6760 -7.6393 1.8469 44 1 8.3552 -9.0029 -0.6818 45 1 9.7328 -9.3556 0.4462 46 1 12.1996 -4.8506 -1.8878 47 1 10.9402 -7.1523 1.0324 48 1 10.1246 -5.7746 0.1761 49 1 3.6505 -2.9675 1.2617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330073025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:01 Heat of formation + Delta-G solvation = 10.540896 kcal Electronic energy + Delta-G solvation = -29684.870016 eV Core-core repulsion = 25613.791802 eV Total energy + Delta-G solvation = -4071.078214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.72682 -39.77713 -38.71132 -37.93755 -35.12149 -34.51040 -32.72599 -32.12020 -31.05591 -30.31777 -28.91149 -27.59855 -27.34994 -24.67514 -23.85460 -22.77881 -22.58468 -21.68415 -20.47782 -19.92241 -18.73914 -17.77780 -17.03662 -16.76445 -16.56962 -16.27197 -15.94532 -15.85868 -15.15570 -14.82718 -14.56734 -14.27323 -14.02888 -13.83178 -13.73035 -13.29454 -13.18412 -13.06672 -13.00957 -12.87894 -12.50955 -12.33014 -12.26761 -11.88315 -11.70786 -11.66035 -11.32036 -11.22931 -10.90084 -10.77923 -10.67283 -10.49593 -10.28352 -10.05256 -9.87710 -9.74285 -9.54350 -9.18374 -8.80910 -8.74488 -8.62331 -8.19505 -6.83855 -5.72977 -3.04946 1.24741 1.37447 2.29647 2.80247 2.97563 3.42652 3.44974 3.47583 3.50428 3.88390 4.37212 4.49963 4.62007 4.75124 4.83701 4.93480 5.07639 5.08178 5.23049 5.27055 5.30199 5.31706 5.38322 5.39453 5.44555 5.54070 5.58349 5.63518 5.79181 5.92028 5.97032 6.06959 6.13920 6.21289 6.29433 6.31654 6.47907 6.50495 6.56187 6.61281 6.66634 6.78221 6.94648 7.00270 7.11339 7.22328 7.34344 7.59937 7.80284 7.86984 8.01954 8.59687 9.07670 9.74758 10.67665 11.44554 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.002333 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.962481 B =11997.735591 C =13019.412873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.529 6.529 4 N -0.672 5.672 5 C 0.135 3.865 6 C -0.121 4.121 7 C -0.101 4.101 8 C -0.113 4.113 9 C -0.043 4.043 10 C -0.103 4.103 11 C 0.513 3.487 12 O -0.529 6.529 13 N -0.721 5.721 14 C 0.171 3.829 15 H 0.102 0.898 16 C -0.156 4.156 17 C -0.155 4.155 18 C 0.125 3.875 19 N -0.608 5.608 20 C -0.217 4.217 21 H 0.081 0.919 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.910 3.090 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.159 3.841 29 C -0.129 4.129 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.411 0.589 34 H 0.135 0.865 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.394 0.606 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.033 0.967 46 H 0.252 0.748 47 H 0.023 0.977 48 H 0.073 0.927 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.795 6.449 11.070 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.297 3.703 3 O -0.404 6.404 4 N -0.318 5.318 5 C 0.042 3.958 6 C -0.141 4.141 7 C -0.120 4.120 8 C -0.132 4.132 9 C -0.044 4.044 10 C -0.143 4.143 11 C 0.298 3.702 12 O -0.404 6.404 13 N -0.372 5.372 14 C 0.067 3.933 15 H 0.120 0.880 16 C -0.214 4.214 17 C -0.175 4.175 18 C -0.002 4.002 19 N -0.334 5.334 20 C -0.344 4.344 21 H 0.098 0.902 22 C -0.204 4.204 23 N -0.565 5.565 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.033 3.967 29 C -0.149 4.149 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.153 0.847 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.228 0.772 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.041 0.959 48 H 0.091 0.909 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.478 7.412 9.911 23.928 hybrid contribution 0.545 -0.592 -0.383 0.892 sum -19.933 6.820 9.528 23.122 Atomic orbital electron populations 1.21886 0.90821 1.05253 1.05086 1.21000 0.90848 0.83206 0.75265 1.90734 1.70439 1.31318 1.47946 1.43596 1.05419 1.09849 1.72931 1.17630 0.82198 0.97478 0.98517 1.21203 0.93815 0.99230 0.99854 1.21020 0.93934 0.98526 0.98486 1.21058 1.00048 0.94245 0.97832 1.19023 0.92571 0.94794 0.98054 1.20693 1.02389 0.93365 0.97860 1.20362 0.78049 0.82883 0.88925 1.90746 1.51980 1.80123 1.17575 1.46062 1.59883 1.18184 1.13025 1.20568 0.92393 0.85481 0.94812 0.88019 1.22119 0.98212 0.99883 1.01235 1.23316 0.96929 0.99545 0.97703 1.22416 0.93388 0.92374 0.91989 1.45623 1.57682 1.23769 1.06352 1.18959 1.24341 1.06421 0.84674 0.90161 1.24773 1.00206 0.97370 0.98034 1.69825 1.40826 1.12594 1.33300 0.86069 0.78427 0.77540 0.83892 1.20456 1.21633 1.21813 1.22152 0.89631 0.98509 0.86374 1.20630 0.94237 0.99254 1.00791 0.88500 0.88540 0.89896 0.75349 0.84708 0.85662 0.85786 0.88266 0.87750 0.77231 0.92882 0.91439 0.93252 0.91412 0.93873 0.94916 0.93787 0.95899 0.90875 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.31 36.01 0.37 -0.40 16 2 C 0.51 4.77 7.78 -10.98 -0.09 4.68 16 3 O -0.53 -7.24 14.54 5.55 0.08 -7.16 16 4 N -0.67 -6.02 5.34 -9.86 -0.05 -6.07 16 5 C 0.14 1.65 6.30 -83.69 -0.53 1.12 16 6 C -0.12 -1.64 8.70 -39.39 -0.34 -1.98 16 7 C -0.10 -1.33 10.04 -39.61 -0.40 -1.73 16 8 C -0.11 -1.52 9.69 -39.55 -0.38 -1.91 16 9 C -0.04 -0.55 4.37 -104.66 -0.46 -1.01 16 10 C -0.10 -1.13 5.83 -29.04 -0.17 -1.30 16 11 C 0.51 7.85 7.79 -10.99 -0.09 7.76 16 12 O -0.53 -10.68 15.70 5.55 0.09 -10.59 16 13 N -0.72 -10.23 5.08 -53.80 -0.27 -10.51 16 14 C 0.17 2.97 2.43 -67.93 -0.17 2.80 16 15 H 0.10 2.35 7.37 -51.93 -0.38 1.96 16 16 C -0.16 -2.32 9.29 37.16 0.35 -1.97 16 17 C -0.15 -2.73 3.72 -89.97 -0.33 -3.06 16 18 C 0.13 2.50 8.08 -8.52 -0.07 2.43 16 19 N -0.61 -15.56 3.59 -184.62 -0.66 -16.23 16 20 C -0.22 -6.17 10.75 -15.05 -0.16 -6.33 16 21 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.74 11.50 55.49 0.64 -27.10 16 24 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 C 0.16 3.67 6.96 -8.38 -0.06 3.61 16 29 C -0.13 -1.53 9.62 -39.39 -0.38 -1.90 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.41 2.32 8.82 -40.82 -0.36 1.96 16 34 H 0.14 1.88 6.22 -52.49 -0.33 1.55 16 35 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 39 H 0.39 4.24 8.60 -40.82 -0.35 3.89 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.02 6.50 -51.93 -0.34 0.68 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.04 0.82 6.43 -51.93 -0.33 0.49 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 1.91 7.10 -51.93 -0.37 1.54 16 49 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 406.43 15.07 6.12 6.12 Total: -1.00 -38.02 406.43 -9.57 -47.59 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.50 Total: 5.67 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -3.00 Total: 0.51 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.35 Total: -59.91 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.17 Total: -17.75 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.02 -9.57 -47.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330073025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.131 kcal (2) G-P(sol) polarization free energy of solvation -38.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds