Wall clock time and date at job start Wed Apr 1 2020 03:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21287 * 120.00091 * 2 1 4 4 N 1.34782 * 119.99862 * 180.02562 * 2 1 3 5 5 C 1.39919 * 119.99738 * 184.62297 * 4 2 1 6 6 C 1.38897 * 120.07261 * 324.88978 * 5 4 2 7 7 C 1.38090 * 119.92976 * 180.02562 * 6 5 4 8 8 C 1.38301 * 120.06991 * 359.73097 * 7 6 5 9 9 C 1.38259 * 120.14502 * 0.54234 * 8 7 6 10 10 C 1.50695 * 119.97060 * 179.72314 * 9 8 7 11 11 C 1.50700 * 109.47659 * 269.73173 * 10 9 8 12 12 O 1.21284 * 119.99789 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00275 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99713 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47477 * 35.00302 * 14 13 11 16 16 C 1.53002 * 109.46848 * 274.99664 * 14 13 11 17 17 C 1.53007 * 109.46830 * 155.00153 * 14 13 11 18 18 C 1.53496 * 114.20556 * 179.97438 * 17 14 13 19 19 N 1.47062 * 87.98544 * 87.71516 * 18 17 14 20 20 C 1.36945 * 136.05785 * 207.08552 * 19 18 17 21 21 H 1.07994 * 119.99936 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99880 * 180.27856 * 20 19 18 23 23 N 1.31619 * 120.00064 * 359.72173 * 22 20 19 24 24 Si 1.86797 * 119.99877 * 179.72358 * 22 20 19 25 25 H 1.48496 * 109.47217 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47086 * 119.99655 * 24 22 20 27 27 H 1.48496 * 109.47127 * 239.99907 * 24 22 20 28 28 C 1.47066 * 87.88504 * 27.34243 * 19 18 17 29 29 C 1.38133 * 120.06517 * 359.45730 * 9 8 7 30 30 H 1.08995 * 109.47055 * 269.99953 * 1 2 3 31 31 H 1.09001 * 109.47482 * 29.99681 * 1 2 3 32 32 H 1.08997 * 109.47357 * 150.00124 * 1 2 3 33 33 H 0.96996 * 120.00191 * 4.61911 * 4 2 1 34 34 H 1.07998 * 120.03419 * 0.04578 * 6 5 4 35 35 H 1.08006 * 119.96176 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.92671 * 180.26971 * 8 7 6 37 37 H 1.08998 * 109.47183 * 149.72443 * 10 9 8 38 38 H 1.09005 * 109.46476 * 29.73098 * 10 9 8 39 39 H 0.97002 * 119.99772 * 359.97438 * 13 11 10 40 40 H 1.08993 * 109.47165 * 60.00675 * 16 14 13 41 41 H 1.09004 * 109.46692 * 180.02562 * 16 14 13 42 42 H 1.08994 * 109.47151 * 300.00046 * 16 14 13 43 43 H 1.08994 * 113.28137 * 46.93263 * 17 14 13 44 44 H 1.08999 * 113.46747 * 332.93609 * 18 17 14 45 45 H 1.08994 * 113.52032 * 202.50721 * 18 17 14 46 46 H 0.97000 * 120.00301 * 180.02562 * 23 22 20 47 47 H 1.08998 * 113.46820 * 87.43937 * 28 19 18 48 48 H 1.09005 * 113.46696 * 217.87611 * 28 19 18 49 49 H 1.07997 * 120.03708 * 180.25122 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5767 -1.1692 0.0971 6 6 4.3178 -0.1596 -0.5033 7 6 5.6952 -0.1647 -0.4055 8 6 6.3365 -1.1707 0.2941 9 6 5.6021 -2.1803 0.8882 10 6 6.3053 -3.2779 1.6442 11 6 6.6215 -4.4127 0.7043 12 8 6.3063 -4.3377 -0.4645 13 7 7.2544 -5.5108 1.1624 14 6 7.5622 -6.6136 0.2485 15 1 7.8043 -6.2129 -0.7359 16 6 6.3484 -7.5385 0.1383 17 6 8.7577 -7.4028 0.7860 18 6 9.1744 -8.5903 -0.0928 19 7 10.0304 -7.6638 -0.8487 20 6 10.5232 -7.5948 -2.1245 21 1 10.2825 -8.3682 -2.8389 22 6 11.3373 -6.5342 -2.4977 23 7 11.6310 -5.5920 -1.6270 24 14 12.0157 -6.4442 -4.2358 25 1 11.5416 -7.6169 -5.0136 26 1 11.5455 -5.1950 -4.8867 27 1 13.4999 -6.4494 -4.1887 28 6 10.1298 -6.8472 0.3704 29 6 4.2240 -2.1809 0.7940 30 1 -0.3633 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6983 -2.0059 -0.0685 34 1 3.8173 0.6288 -1.0458 35 1 6.2721 0.6199 -0.8725 36 1 7.4137 -1.1701 0.3728 37 1 5.6599 -3.6386 2.4451 38 1 7.2308 -2.8903 2.0701 39 1 7.5068 -5.5706 2.0971 40 1 5.4968 -6.9763 -0.2446 41 1 6.5776 -8.3593 -0.5413 42 1 6.1064 -7.9391 1.1227 43 1 8.6760 -7.6393 1.8469 44 1 8.3552 -9.0029 -0.6818 45 1 9.7328 -9.3556 0.4462 46 1 12.1996 -4.8506 -1.8878 47 1 10.9402 -7.1523 1.0324 48 1 10.1246 -5.7746 0.1761 49 1 3.6505 -2.9675 1.2617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330073025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:59 Heat of formation + Delta-G solvation = -16.772293 kcal Electronic energy + Delta-G solvation = -29686.054404 eV Core-core repulsion = 25613.791802 eV Total energy + Delta-G solvation = -4072.262603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.59802 -41.02536 -40.00483 -39.17808 -36.10459 -35.84607 -34.20702 -33.66837 -31.76671 -31.65618 -29.66239 -29.45873 -28.34934 -26.35494 -25.56467 -23.91276 -23.55699 -23.03093 -21.55507 -21.01853 -20.24013 -18.76359 -18.56758 -17.85452 -17.80311 -17.29563 -17.21688 -16.89967 -16.71045 -16.09131 -15.74611 -15.65477 -15.28111 -15.20827 -14.69549 -14.60555 -14.48191 -14.38319 -14.03599 -13.67386 -13.55744 -13.38461 -13.25084 -13.15809 -13.02043 -12.90359 -12.82283 -12.63431 -12.49536 -12.32304 -12.15677 -11.97045 -11.78681 -11.46674 -11.37956 -11.03894 -10.91341 -10.89118 -10.73846 -9.93816 -9.73253 -9.12661 -8.88177 -7.91483 -5.22298 0.28704 0.39091 1.40428 1.42660 1.51735 1.55779 1.79747 2.11558 2.31976 2.45727 2.87814 3.31088 3.54682 3.66723 3.68322 3.79369 3.94452 3.95954 4.13647 4.19084 4.36705 4.39171 4.45404 4.46970 4.57704 4.58728 4.64947 4.66758 4.73136 4.76228 4.80212 4.85309 4.89436 5.01748 5.03724 5.09716 5.26248 5.27205 5.30666 5.34989 5.37062 5.52857 5.54162 5.60752 5.63173 5.78244 5.97089 6.06151 6.43338 6.75319 6.91894 7.11770 7.46824 7.61468 8.62669 9.26186 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.002333 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.962481 B =11997.735591 C =13019.412873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.502 3.498 3 O -0.579 6.579 4 N -0.662 5.662 5 C 0.129 3.871 6 C -0.142 4.142 7 C -0.114 4.114 8 C -0.135 4.135 9 C -0.054 4.054 10 C -0.092 4.092 11 C 0.508 3.492 12 O -0.585 6.585 13 N -0.709 5.709 14 C 0.177 3.823 15 H 0.035 0.965 16 C -0.145 4.145 17 C -0.118 4.118 18 C 0.123 3.877 19 N -0.643 5.643 20 C -0.222 4.222 21 H 0.082 0.918 22 C -0.071 4.071 23 N -0.951 5.951 24 Si 0.972 3.028 25 H -0.263 1.263 26 H -0.298 1.298 27 H -0.290 1.290 28 C 0.153 3.847 29 C -0.130 4.130 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.428 0.572 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.416 0.584 40 H 0.042 0.958 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.245 0.755 47 H 0.020 0.980 48 H 0.032 0.968 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.130 4.320 13.313 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.293 3.707 3 O -0.458 6.458 4 N -0.309 5.309 5 C 0.035 3.965 6 C -0.162 4.162 7 C -0.132 4.132 8 C -0.154 4.154 9 C -0.055 4.055 10 C -0.131 4.131 11 C 0.296 3.704 12 O -0.465 6.465 13 N -0.361 5.361 14 C 0.072 3.928 15 H 0.053 0.947 16 C -0.203 4.203 17 C -0.137 4.137 18 C -0.002 4.002 19 N -0.370 5.370 20 C -0.350 4.350 21 H 0.100 0.900 22 C -0.264 4.264 23 N -0.601 5.601 24 Si 0.800 3.200 25 H -0.188 1.188 26 H -0.225 1.225 27 H -0.217 1.217 28 C 0.027 3.973 29 C -0.150 4.150 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.267 0.733 34 H 0.141 0.859 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.161 0.839 38 H 0.141 0.859 39 H 0.253 0.747 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.139 0.861 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.051 0.949 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.849 5.207 12.210 26.425 hybrid contribution 1.230 0.038 -1.068 1.629 sum -21.619 5.245 11.142 24.880 Atomic orbital electron populations 1.21919 0.86581 1.06687 1.06728 1.21973 0.92764 0.82327 0.73669 1.90717 1.71817 1.33075 1.50227 1.43616 1.04183 1.10875 1.72241 1.17826 0.83836 0.96984 0.97850 1.21259 0.94133 0.99910 1.00917 1.21193 0.94210 0.99025 0.98806 1.21233 1.00296 0.95109 0.98776 1.19330 0.93278 0.94915 0.98011 1.20730 1.04035 0.90952 0.97375 1.21128 0.76914 0.83592 0.88755 1.90730 1.54336 1.81170 1.20266 1.45887 1.59232 1.17306 1.13640 1.20244 0.93633 0.86495 0.92429 0.94659 1.21999 0.96223 0.98811 1.03237 1.23085 0.93519 0.96953 1.00166 1.22652 0.92826 0.92887 0.91823 1.45984 1.58331 1.26315 1.06365 1.19327 1.23216 1.05929 0.86532 0.89990 1.25578 1.01505 0.97547 1.01725 1.70009 1.41937 1.13163 1.34949 0.85098 0.77567 0.77432 0.79866 1.18759 1.22536 1.21655 1.22157 0.92993 0.96167 0.85948 1.20939 0.94149 0.99550 1.00336 0.86538 0.88538 0.87011 0.73290 0.85863 0.84949 0.85856 0.83910 0.85910 0.74685 0.93847 0.91965 0.89440 0.86139 0.92806 0.92783 0.94620 0.96220 0.94925 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.31 71.24 0.73 -0.33 16 2 C 0.50 9.02 7.78 87.66 0.68 9.71 16 3 O -0.58 -16.33 14.54 -3.05 -0.04 -16.37 16 4 N -0.66 -11.05 5.34 -303.50 -1.62 -12.67 16 5 C 0.13 3.13 6.30 38.16 0.24 3.37 16 6 C -0.14 -4.05 8.70 22.39 0.19 -3.85 16 7 C -0.11 -3.20 10.04 22.25 0.22 -2.97 16 8 C -0.14 -3.77 9.69 22.29 0.22 -3.56 16 9 C -0.05 -1.34 4.37 -19.89 -0.09 -1.43 16 10 C -0.09 -1.78 5.83 29.10 0.17 -1.61 16 11 C 0.51 15.00 7.79 87.66 0.68 15.68 16 12 O -0.59 -24.12 15.70 -3.04 -0.05 -24.17 16 13 N -0.71 -18.59 5.08 -442.52 -2.25 -20.84 16 14 C 0.18 5.91 2.43 45.00 0.11 6.02 16 15 H 0.04 1.68 7.37 -2.39 -0.02 1.66 16 16 C -0.14 -3.90 9.29 71.98 0.67 -3.23 16 17 C -0.12 -3.85 3.72 -10.37 -0.04 -3.89 16 18 C 0.12 4.65 8.08 83.18 0.67 5.33 16 19 N -0.64 -33.13 3.59 -738.01 -2.65 -35.78 16 20 C -0.22 -12.84 10.75 84.03 0.90 -11.94 16 21 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 22 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 23 N -0.95 -59.76 11.50 21.65 0.25 -59.51 16 24 Si 0.97 48.14 29.55 68.60 2.03 50.16 16 25 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 26 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 28 C 0.15 7.08 6.96 83.26 0.58 7.66 16 29 C -0.13 -2.88 9.62 22.39 0.22 -2.67 16 30 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.43 3.86 8.82 -92.71 -0.82 3.05 16 34 H 0.12 3.73 6.22 -2.91 -0.02 3.71 16 35 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.12 3.30 8.06 -2.91 -0.02 3.27 16 37 H 0.14 1.55 8.08 -2.39 -0.02 1.53 16 38 H 0.12 1.98 8.08 -2.38 -0.02 1.96 16 39 H 0.42 7.31 8.60 -92.71 -0.80 6.51 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.74 6.50 -2.39 -0.02 1.72 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.05 1.92 6.43 -2.39 -0.02 1.90 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.03 1.76 7.10 -2.38 -0.02 1.74 16 49 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -90.48 406.43 1.67 -88.81 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.64 Total: 21.84 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.63 Total: 8.54 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -6.27 Total: -128.81 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.09 Total: -40.54 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.16 kcal Total: -90.48 1.67 -88.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330073025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.041 kcal (2) G-P(sol) polarization free energy of solvation -90.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds