Wall clock time and date at job start Wed Apr 1 2020 04:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47251 * 2 1 4 4 C 1.53002 * 109.47523 * 119.99873 * 2 1 3 5 5 C 1.52993 * 109.47426 * 185.00160 * 4 2 1 6 6 C 1.53002 * 109.47118 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46959 * 179.97438 * 6 5 4 8 8 C 1.36935 * 119.99754 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00142 * 359.97438 * 8 7 6 10 10 C 1.38816 * 119.99938 * 180.02562 * 8 7 6 11 11 N 1.31620 * 119.99760 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99846 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47185 * 60.00178 * 12 10 8 14 14 H 1.48510 * 109.47147 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47430 * 299.99905 * 12 10 8 16 16 N 1.46503 * 109.47473 * 240.00329 * 2 1 3 17 17 C 1.34772 * 119.99872 * 84.99399 * 16 2 1 18 18 O 1.21281 * 120.00478 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99834 * 180.02562 * 17 16 2 20 20 C 1.52999 * 109.47377 * 180.02562 * 19 17 16 21 21 H 1.09000 * 110.12361 * 306.58797 * 20 19 17 22 22 N 1.46731 * 110.09935 * 68.17505 * 20 19 17 23 23 C 1.34425 * 108.75024 * 119.19984 * 22 20 19 24 24 O 1.21555 * 124.85418 * 179.97438 * 23 22 20 25 25 C 1.47540 * 110.28777 * 0.02562 * 23 22 20 26 26 C 1.39629 * 132.34479 * 180.35572 * 25 23 22 27 27 C 1.37938 * 119.82597 * 180.15698 * 26 25 23 28 28 C 1.38385 * 120.32258 * 359.44904 * 27 26 25 29 29 C 1.38476 * 120.18880 * 0.27860 * 28 27 26 30 30 C 1.37585 * 119.95350 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47478 * 299.99729 * 1 2 3 32 32 H 1.08995 * 109.47167 * 60.00212 * 1 2 3 33 33 H 1.09009 * 109.46603 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47118 * 305.00743 * 4 2 1 35 35 H 1.09001 * 109.46759 * 65.00031 * 4 2 1 36 36 H 1.08997 * 109.47448 * 300.00380 * 5 4 2 37 37 H 1.09001 * 109.47258 * 60.00176 * 5 4 2 38 38 H 1.08998 * 109.47089 * 299.99820 * 6 5 4 39 39 H 1.08993 * 109.47272 * 60.00089 * 6 5 4 40 40 H 0.96999 * 120.00108 * 0.02562 * 7 6 5 41 41 H 0.97006 * 119.99449 * 180.02562 * 11 10 8 42 42 H 0.96997 * 119.99715 * 265.00232 * 16 2 1 43 43 H 1.09003 * 109.47285 * 59.99917 * 19 17 16 44 44 H 1.09001 * 109.47333 * 300.00324 * 19 17 16 45 45 H 0.97002 * 125.62717 * 299.19833 * 22 20 19 46 46 H 1.08000 * 120.08363 * 359.90103 * 26 25 23 47 47 H 1.08002 * 119.84176 * 179.73300 * 27 26 25 48 48 H 1.08000 * 119.91308 * 180.30220 * 28 27 26 49 49 H 1.08002 * 120.02527 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5626 7 7 5.5350 -1.2321 2.6240 8 6 6.2188 -1.8064 3.6621 9 1 5.6817 -2.3348 4.4358 10 6 7.6023 -1.7084 3.7205 11 7 8.2567 -1.0631 2.7784 12 14 8.5350 -2.4912 5.1371 13 1 8.2780 -3.9537 5.1508 14 1 9.9899 -2.2464 4.9672 15 1 8.0788 -1.8964 6.4190 16 7 2.0184 -0.6905 -1.1962 17 6 2.1470 -0.0181 -2.3571 18 8 1.8589 1.1587 -2.4115 19 6 2.6489 -0.7286 -3.5877 20 6 2.7010 0.2546 -4.7588 21 1 1.7337 0.7414 -4.8831 22 7 3.7450 1.2594 -4.5275 23 6 4.6533 1.1739 -5.5148 24 8 5.6432 1.8729 -5.6105 25 6 4.2762 0.1112 -6.4662 26 6 4.8801 -0.3657 -7.6314 27 6 4.2896 -1.3915 -8.3397 28 6 3.1078 -1.9578 -7.8949 29 6 2.5059 -1.4941 -6.7373 30 6 3.0833 -0.4672 -6.0267 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 1.6054 -0.2618 2.1370 35 1 1.7517 -1.7715 1.2056 36 1 3.9995 -1.0726 0.4260 37 1 3.8532 0.4371 1.3574 38 1 3.6403 -0.8759 3.4505 39 1 3.7866 -2.3852 2.5185 40 1 6.0173 -0.7565 1.9296 41 1 9.2235 -0.9950 2.8190 42 1 2.2491 -1.6317 -1.1527 43 1 1.9761 -1.5505 -3.8326 44 1 3.6480 -1.1211 -3.3986 45 1 3.7749 1.8825 -3.7847 46 1 5.8048 0.0704 -7.9793 47 1 4.7542 -1.7576 -9.2433 48 1 2.6538 -2.7640 -8.4521 49 1 1.5834 -1.9378 -6.3928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330940237.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:12 Heat of formation + Delta-G solvation = -38.835254 kcal Electronic energy + Delta-G solvation = -29232.699786 eV Core-core repulsion = 25159.480461 eV Total energy + Delta-G solvation = -4073.219324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63749 -39.95165 -38.28580 -37.10831 -36.20019 -34.86769 -32.79815 -32.03493 -31.33631 -30.97511 -30.18744 -29.34124 -25.78845 -25.14535 -24.21180 -23.06418 -21.88375 -21.24372 -20.84872 -20.71761 -20.38910 -17.71835 -17.36035 -17.06925 -17.00882 -16.52934 -16.33128 -15.88233 -15.21971 -14.88273 -14.71757 -14.60560 -14.48135 -14.12168 -14.04054 -13.77976 -13.55953 -13.41989 -13.13520 -13.00917 -12.95205 -12.74375 -12.35584 -12.22954 -12.14886 -12.06810 -11.45917 -11.34810 -11.22174 -10.85612 -10.82870 -10.51346 -10.44990 -10.18475 -10.07263 -10.03030 -9.69080 -9.65093 -9.38921 -9.23402 -9.18716 -8.86547 -6.92019 -5.75613 -3.04817 0.39574 0.84329 2.39724 2.52270 2.92832 2.97144 3.44029 3.46432 3.48067 3.49770 3.69492 4.00211 4.28796 4.45143 4.52914 4.56380 4.60662 4.71805 4.80801 4.91440 4.93770 4.98777 5.08509 5.11340 5.22152 5.35827 5.39896 5.49473 5.50212 5.56572 5.57160 5.72667 5.80157 5.85483 5.89428 5.95559 5.99365 6.06255 6.16136 6.32265 6.35697 6.37550 6.38333 6.55439 6.81708 6.83544 6.87053 7.29252 7.69147 7.98062 8.03576 8.43226 9.53823 10.12581 10.46686 11.47192 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.002263 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.760993 B =12370.989185 C =14167.903637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.242 4.242 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.933 5.933 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.718 5.718 17 C 0.516 3.484 18 O -0.544 6.544 19 C -0.151 4.151 20 C 0.190 3.810 21 H 0.111 0.889 22 N -0.708 5.708 23 C 0.557 3.443 24 O -0.525 6.525 25 C -0.152 4.152 26 C -0.047 4.047 27 C -0.125 4.125 28 C -0.089 4.089 29 C -0.100 4.100 30 C -0.081 4.081 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.256 0.744 42 H 0.402 0.598 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.432 0.568 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.430 -2.954 -22.300 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.373 4.373 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.216 1.216 15 H -0.213 1.213 16 N -0.369 5.369 17 C 0.303 3.697 18 O -0.422 6.422 19 C -0.192 4.192 20 C 0.084 3.916 21 H 0.129 0.871 22 N -0.365 5.365 23 C 0.344 3.656 24 O -0.402 6.402 25 C -0.155 4.155 26 C -0.066 4.066 27 C -0.143 4.143 28 C -0.108 4.108 29 C -0.119 4.119 30 C -0.082 4.082 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.066 0.934 42 H 0.237 0.763 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.275 0.725 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.064 -1.847 -22.251 29.359 hybrid contribution 0.839 -0.597 0.999 1.435 sum -18.225 -2.444 -21.252 28.102 Atomic orbital electron populations 1.22162 0.95361 1.01983 1.02452 1.21074 0.93622 0.97835 0.83874 0.89270 1.21854 0.96919 1.00762 0.96614 1.21729 0.93580 1.01463 0.99548 1.20641 0.86246 0.96395 0.94183 1.42374 1.00161 1.66248 1.29083 1.19188 0.89440 1.27334 1.01344 0.91274 1.24765 0.96472 1.01180 0.98650 1.69657 1.07313 1.46804 1.34418 0.86257 0.79007 0.78935 0.81915 1.21273 1.21643 1.21251 1.46106 1.66844 1.14269 1.09654 1.20441 0.77295 0.87364 0.84643 1.90703 1.50533 1.15836 1.85118 1.22075 1.04977 0.99423 0.92680 1.19708 0.93366 0.88161 0.90383 0.87133 1.45944 1.24555 1.37912 1.28099 1.18318 0.82452 0.83012 0.81797 1.90832 1.26738 1.46843 1.75781 1.20492 0.97582 0.99651 0.97808 1.20925 0.99009 0.94587 0.92061 1.21176 0.96173 0.96600 1.00384 1.21344 0.95108 0.98898 0.95414 1.20324 1.00469 0.95944 0.95118 1.20408 0.95616 0.96312 0.95899 0.91518 0.92339 0.92531 0.90245 0.91404 0.92126 0.91970 0.96530 0.96614 0.78338 0.93416 0.76320 0.87079 0.87534 0.72501 0.84883 0.84912 0.84881 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.42 2.57 -67.93 -0.17 1.24 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 C -0.12 -1.34 4.75 -26.73 -0.13 -1.47 16 5 C -0.13 -1.91 5.22 -26.73 -0.14 -2.05 16 6 C 0.15 3.03 6.26 -4.04 -0.03 3.00 16 7 N -0.73 -18.99 5.60 -59.91 -0.34 -19.33 16 8 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 10 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 11 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 12 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 N -0.72 -6.44 4.53 -53.80 -0.24 -6.68 16 17 C 0.52 5.05 7.69 -10.99 -0.08 4.97 16 18 O -0.54 -7.01 14.61 5.56 0.08 -6.93 16 19 C -0.15 -1.07 5.41 -27.88 -0.15 -1.22 16 20 C 0.19 1.60 3.05 -68.90 -0.21 1.39 16 21 H 0.11 0.88 7.92 -51.93 -0.41 0.47 16 22 N -0.71 -8.05 5.73 -55.86 -0.32 -8.37 16 23 C 0.56 7.52 8.34 -12.63 -0.11 7.42 16 24 O -0.53 -9.17 18.04 5.32 0.10 -9.07 16 25 C -0.15 -1.60 6.26 -105.05 -0.66 -2.26 16 26 C -0.05 -0.41 10.10 -39.17 -0.40 -0.81 16 27 C -0.13 -0.78 10.02 -39.64 -0.40 -1.17 16 28 C -0.09 -0.46 10.05 -39.44 -0.40 -0.86 16 29 C -0.10 -0.57 10.03 -39.73 -0.40 -0.97 16 30 C -0.08 -0.65 5.67 -104.27 -0.59 -1.24 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.40 2.88 8.60 -40.82 -0.35 2.53 16 43 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.43 5.19 8.15 -40.82 -0.33 4.86 16 46 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 47 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 48 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 49 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 LS Contribution 410.32 15.07 6.18 6.18 Total: -1.00 -36.72 410.32 -10.26 -46.97 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.67 Total: 10.35 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.75 Total: -2.65 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.17 Total: -62.52 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.18 Total: -15.99 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.72 -10.26 -46.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330940237.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.137 kcal (2) G-P(sol) polarization free energy of solvation -36.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds