Wall clock time and date at job start Wed Apr 1 2020 04:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47251 * 2 1 4 4 C 1.53002 * 109.47523 * 119.99873 * 2 1 3 5 5 C 1.52993 * 109.47426 * 185.00160 * 4 2 1 6 6 C 1.53002 * 109.47118 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46959 * 179.97438 * 6 5 4 8 8 C 1.36935 * 119.99754 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00142 * 359.97438 * 8 7 6 10 10 C 1.38816 * 119.99938 * 180.02562 * 8 7 6 11 11 N 1.31620 * 119.99760 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99846 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47185 * 60.00178 * 12 10 8 14 14 H 1.48510 * 109.47147 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47430 * 299.99905 * 12 10 8 16 16 N 1.46503 * 109.47473 * 240.00329 * 2 1 3 17 17 C 1.34772 * 119.99872 * 84.99399 * 16 2 1 18 18 O 1.21281 * 120.00478 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99834 * 180.02562 * 17 16 2 20 20 C 1.52999 * 109.47377 * 180.02562 * 19 17 16 21 21 H 1.09000 * 110.12361 * 306.58797 * 20 19 17 22 22 N 1.46731 * 110.09935 * 68.17505 * 20 19 17 23 23 C 1.34425 * 108.75024 * 119.19984 * 22 20 19 24 24 O 1.21555 * 124.85418 * 179.97438 * 23 22 20 25 25 C 1.47540 * 110.28777 * 0.02562 * 23 22 20 26 26 C 1.39629 * 132.34479 * 180.35572 * 25 23 22 27 27 C 1.37938 * 119.82597 * 180.15698 * 26 25 23 28 28 C 1.38385 * 120.32258 * 359.44904 * 27 26 25 29 29 C 1.38476 * 120.18880 * 0.27860 * 28 27 26 30 30 C 1.37585 * 119.95350 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47478 * 299.99729 * 1 2 3 32 32 H 1.08995 * 109.47167 * 60.00212 * 1 2 3 33 33 H 1.09009 * 109.46603 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47118 * 305.00743 * 4 2 1 35 35 H 1.09001 * 109.46759 * 65.00031 * 4 2 1 36 36 H 1.08997 * 109.47448 * 300.00380 * 5 4 2 37 37 H 1.09001 * 109.47258 * 60.00176 * 5 4 2 38 38 H 1.08998 * 109.47089 * 299.99820 * 6 5 4 39 39 H 1.08993 * 109.47272 * 60.00089 * 6 5 4 40 40 H 0.96999 * 120.00108 * 0.02562 * 7 6 5 41 41 H 0.97006 * 119.99449 * 180.02562 * 11 10 8 42 42 H 0.96997 * 119.99715 * 265.00232 * 16 2 1 43 43 H 1.09003 * 109.47285 * 59.99917 * 19 17 16 44 44 H 1.09001 * 109.47333 * 300.00324 * 19 17 16 45 45 H 0.97002 * 125.62717 * 299.19833 * 22 20 19 46 46 H 1.08000 * 120.08363 * 359.90103 * 26 25 23 47 47 H 1.08002 * 119.84176 * 179.73300 * 27 26 25 48 48 H 1.08000 * 119.91308 * 180.30220 * 28 27 26 49 49 H 1.08002 * 120.02527 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5626 7 7 5.5350 -1.2321 2.6240 8 6 6.2188 -1.8064 3.6621 9 1 5.6817 -2.3348 4.4358 10 6 7.6023 -1.7084 3.7205 11 7 8.2567 -1.0631 2.7784 12 14 8.5350 -2.4912 5.1371 13 1 8.2780 -3.9537 5.1508 14 1 9.9899 -2.2464 4.9672 15 1 8.0788 -1.8964 6.4190 16 7 2.0184 -0.6905 -1.1962 17 6 2.1470 -0.0181 -2.3571 18 8 1.8589 1.1587 -2.4115 19 6 2.6489 -0.7286 -3.5877 20 6 2.7010 0.2546 -4.7588 21 1 1.7337 0.7414 -4.8831 22 7 3.7450 1.2594 -4.5275 23 6 4.6533 1.1739 -5.5148 24 8 5.6432 1.8729 -5.6105 25 6 4.2762 0.1112 -6.4662 26 6 4.8801 -0.3657 -7.6314 27 6 4.2896 -1.3915 -8.3397 28 6 3.1078 -1.9578 -7.8949 29 6 2.5059 -1.4941 -6.7373 30 6 3.0833 -0.4672 -6.0267 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 1.6054 -0.2618 2.1370 35 1 1.7517 -1.7715 1.2056 36 1 3.9995 -1.0726 0.4260 37 1 3.8532 0.4371 1.3574 38 1 3.6403 -0.8759 3.4505 39 1 3.7866 -2.3852 2.5185 40 1 6.0173 -0.7565 1.9296 41 1 9.2235 -0.9950 2.8190 42 1 2.2491 -1.6317 -1.1527 43 1 1.9761 -1.5505 -3.8326 44 1 3.6480 -1.1211 -3.3986 45 1 3.7749 1.8825 -3.7847 46 1 5.8048 0.0704 -7.9793 47 1 4.7542 -1.7576 -9.2433 48 1 2.6538 -2.7640 -8.4521 49 1 1.5834 -1.9378 -6.3928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330940237.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:11 Heat of formation + Delta-G solvation = -65.591151 kcal Electronic energy + Delta-G solvation = -29233.860008 eV Core-core repulsion = 25159.480461 eV Total energy + Delta-G solvation = -4074.379547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.39035 -40.75946 -39.08728 -38.11288 -37.16696 -36.44573 -34.21278 -33.08115 -32.30774 -31.61164 -31.24523 -30.43008 -27.24501 -25.96653 -24.86256 -24.73147 -22.68239 -22.32609 -21.97825 -21.52849 -21.11475 -19.14621 -18.53261 -18.13898 -17.81916 -17.37603 -16.93013 -16.75340 -16.54216 -16.16017 -15.77425 -15.53460 -15.40606 -15.28530 -15.18361 -14.86562 -14.74430 -14.45946 -14.07693 -13.91525 -13.77164 -13.46131 -13.39296 -13.19719 -13.01735 -12.87017 -12.74885 -12.65839 -12.39207 -12.28114 -12.08624 -12.02856 -11.86611 -11.72467 -11.49367 -11.15314 -10.94263 -10.88580 -10.52792 -10.04281 -9.96037 -9.79400 -9.03150 -7.97718 -5.27480 -0.24756 0.33122 1.45077 1.48851 1.55227 1.64002 1.71459 2.11769 2.21459 2.54224 2.82489 3.07443 3.28232 3.35912 3.63197 3.65314 3.89303 3.96698 4.03767 4.11061 4.18709 4.20311 4.29597 4.40981 4.42840 4.46098 4.58758 4.59532 4.70137 4.72786 4.80106 4.83456 4.86278 4.95390 5.01403 5.02046 5.14025 5.19184 5.33764 5.37673 5.38554 5.42084 5.47549 5.48592 5.60756 5.73091 5.84450 5.92057 6.24348 6.57818 7.03191 7.26815 7.29770 8.07488 8.28848 9.25838 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.002263 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.760993 B =12370.989185 C =14167.903637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.112 4.112 6 C 0.149 3.851 7 N -0.752 5.752 8 C -0.248 4.248 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.977 3.023 13 H -0.274 1.274 14 H -0.296 1.296 15 H -0.277 1.277 16 N -0.712 5.712 17 C 0.512 3.488 18 O -0.580 6.580 19 C -0.140 4.140 20 C 0.188 3.812 21 H 0.118 0.882 22 N -0.709 5.709 23 C 0.543 3.457 24 O -0.587 6.587 25 C -0.189 4.189 26 C -0.066 4.066 27 C -0.124 4.124 28 C -0.076 4.076 29 C -0.093 4.093 30 C -0.077 4.077 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.018 0.982 39 H 0.028 0.972 40 H 0.371 0.629 41 H 0.251 0.749 42 H 0.414 0.586 43 H 0.156 0.844 44 H 0.103 0.897 45 H 0.424 0.576 46 H 0.123 0.877 47 H 0.158 0.842 48 H 0.172 0.828 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.462 -6.458 -22.751 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.039 3.961 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.150 4.150 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.380 4.380 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.805 3.195 13 H -0.199 1.199 14 H -0.223 1.223 15 H -0.203 1.203 16 N -0.364 5.364 17 C 0.300 3.700 18 O -0.461 6.461 19 C -0.180 4.180 20 C 0.083 3.917 21 H 0.136 0.864 22 N -0.363 5.363 23 C 0.333 3.667 24 O -0.469 6.469 25 C -0.192 4.192 26 C -0.085 4.085 27 C -0.141 4.141 28 C -0.094 4.094 29 C -0.111 4.111 30 C -0.078 4.078 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.202 0.798 41 H 0.060 0.940 42 H 0.251 0.749 43 H 0.173 0.827 44 H 0.121 0.879 45 H 0.265 0.735 46 H 0.141 0.859 47 H 0.176 0.824 48 H 0.189 0.811 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.184 -5.414 -22.677 32.182 hybrid contribution 1.676 0.468 1.114 2.066 sum -20.508 -4.945 -21.563 30.166 Atomic orbital electron populations 1.22071 0.93589 1.03101 1.02285 1.20930 0.94868 0.96366 0.83960 0.92086 1.21752 0.93249 1.02392 0.97381 1.21589 0.96733 0.99438 0.97276 1.20875 0.83055 0.97500 0.96260 1.42669 1.02632 1.65905 1.28194 1.19652 0.90004 1.26486 1.01832 0.90381 1.25660 0.97604 1.02443 1.01494 1.69834 1.07102 1.48822 1.36616 0.85162 0.76969 0.78489 0.78859 1.19944 1.22278 1.20275 1.46060 1.66402 1.14785 1.09110 1.20920 0.76642 0.87004 0.85473 1.90696 1.52170 1.17494 1.85708 1.22068 1.05616 0.99711 0.90600 1.19908 0.92475 0.87879 0.91480 0.86420 1.46115 1.24926 1.38136 1.27156 1.19007 0.81860 0.83234 0.82642 1.90767 1.29293 1.49394 1.77401 1.20390 0.99745 1.00247 0.98799 1.21073 0.99253 0.95904 0.92237 1.21507 0.96589 0.95335 1.00712 1.21858 0.93986 0.98693 0.94874 1.20786 1.01293 0.94457 0.94564 1.20469 0.94716 0.96967 0.95652 0.90892 0.93362 0.90672 0.89489 0.89132 0.92321 0.93983 0.96390 0.95451 0.79827 0.94033 0.74935 0.82671 0.87920 0.73481 0.85944 0.82428 0.81091 0.81256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.48 71.98 0.68 -1.60 16 2 C 0.14 2.71 2.57 44.99 0.12 2.83 16 3 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 4 C -0.11 -2.16 4.75 30.59 0.15 -2.01 16 5 C -0.11 -3.36 5.22 30.59 0.16 -3.20 16 6 C 0.15 5.78 6.26 86.38 0.54 6.32 16 7 N -0.75 -39.16 5.60 -343.45 -1.92 -41.09 16 8 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 9 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 11 N -0.97 -61.45 13.06 21.65 0.28 -61.17 16 12 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 15 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 16 N -0.71 -11.56 4.53 -442.53 -2.00 -13.56 16 17 C 0.51 9.53 7.69 87.66 0.67 10.21 16 18 O -0.58 -15.15 14.61 -3.03 -0.04 -15.20 16 19 C -0.14 -1.71 5.41 29.85 0.16 -1.55 16 20 C 0.19 3.03 3.05 44.24 0.13 3.17 16 21 H 0.12 1.75 7.92 -2.39 -0.02 1.73 16 22 N -0.71 -17.51 5.73 -449.13 -2.57 -20.08 16 23 C 0.54 16.21 8.34 86.75 0.72 16.94 16 24 O -0.59 -23.01 18.04 -3.89 -0.07 -23.08 16 25 C -0.19 -4.15 6.26 -20.14 -0.13 -4.27 16 26 C -0.07 -1.18 10.10 22.53 0.23 -0.95 16 27 C -0.12 -1.24 10.02 22.23 0.22 -1.02 16 28 C -0.08 -0.46 10.05 22.36 0.22 -0.23 16 29 C -0.09 -0.67 10.03 22.17 0.22 -0.45 16 30 C -0.08 -1.12 5.67 -19.63 -0.11 -1.23 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.77 7.75 -2.39 -0.02 1.75 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 41 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 42 H 0.41 4.79 8.60 -92.71 -0.80 3.99 16 43 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.42 11.40 8.15 -92.71 -0.76 10.64 16 46 H 0.12 2.30 8.06 -2.91 -0.02 2.27 16 47 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 48 H 0.17 -0.19 8.06 -2.91 -0.02 -0.22 16 49 H 0.17 -0.02 8.06 -2.91 -0.02 -0.05 16 Total: -1.00 -85.13 410.32 -0.28 -85.41 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -1.28 Total: 34.58 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 5.30 Total: 5.43 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -6.22 Total: -135.90 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.11 Total: -38.28 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -85.13 -0.28 -85.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330940237.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.823 kcal (2) G-P(sol) polarization free energy of solvation -85.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds