Wall clock time and date at job start Wed Apr 1 2020 04:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47325 * 2 1 4 4 C 1.52999 * 109.47519 * 120.00498 * 2 1 3 5 5 C 1.53007 * 109.47208 * 185.00312 * 4 2 1 6 6 C 1.52992 * 109.46932 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47243 * 179.97438 * 6 5 4 8 8 C 1.36937 * 120.00233 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99920 * 0.02562 * 8 7 6 10 10 C 1.38809 * 119.99989 * 180.02562 * 8 7 6 11 11 N 1.31620 * 119.99947 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00057 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47196 * 59.99985 * 12 10 8 14 14 H 1.48494 * 109.47072 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46517 * 299.99736 * 12 10 8 16 16 N 1.46506 * 109.47179 * 240.00528 * 2 1 3 17 17 C 1.34779 * 119.99913 * 84.99712 * 16 2 1 18 18 O 1.21280 * 120.00120 * 359.97438 * 17 16 2 19 19 C 1.50698 * 120.00062 * 179.97438 * 17 16 2 20 20 C 1.53000 * 109.47271 * 179.97438 * 19 17 16 21 21 H 1.08999 * 110.12413 * 53.41578 * 20 19 17 22 22 N 1.46734 * 110.09629 * 291.82516 * 20 19 17 23 23 C 1.34427 * 108.74543 * 240.79992 * 22 20 19 24 24 O 1.21560 * 124.85037 * 179.97438 * 23 22 20 25 25 C 1.47540 * 110.29353 * 0.02562 * 23 22 20 26 26 C 1.39619 * 132.34531 * 180.02562 * 25 23 22 27 27 C 1.37941 * 119.82864 * 179.97438 * 26 25 23 28 28 C 1.38389 * 120.31782 * 0.02562 * 27 26 25 29 29 C 1.38475 * 120.18785 * 359.97438 * 28 27 26 30 30 C 1.37576 * 119.95861 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47095 * 299.99096 * 1 2 3 32 32 H 1.08996 * 109.47379 * 59.99840 * 1 2 3 33 33 H 1.09004 * 109.46663 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.46993 * 304.99831 * 4 2 1 35 35 H 1.09000 * 109.47369 * 65.00276 * 4 2 1 36 36 H 1.09005 * 109.46640 * 299.99713 * 5 4 2 37 37 H 1.09000 * 109.46985 * 59.99728 * 5 4 2 38 38 H 1.09005 * 109.47575 * 299.99829 * 6 5 4 39 39 H 1.09000 * 109.47467 * 60.00073 * 6 5 4 40 40 H 0.96999 * 119.99370 * 359.97438 * 7 6 5 41 41 H 0.97004 * 119.99760 * 180.02562 * 11 10 8 42 42 H 0.96996 * 119.99771 * 264.99578 * 16 2 1 43 43 H 1.09008 * 109.47071 * 59.99885 * 19 17 16 44 44 H 1.08999 * 109.47365 * 300.00533 * 19 17 16 45 45 H 0.96996 * 125.62869 * 60.82799 * 22 20 19 46 46 H 1.07995 * 120.08893 * 359.95799 * 26 25 23 47 47 H 1.07992 * 119.84114 * 180.02562 * 27 26 25 48 48 H 1.08001 * 119.90417 * 180.27201 * 28 27 26 49 49 H 1.08004 * 120.01804 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 6 4.0749 -1.3340 2.5630 7 7 5.5350 -1.2311 2.6244 8 6 6.2188 -1.8046 3.6631 9 1 5.6817 -2.3331 4.4367 10 6 7.6022 -1.7066 3.7215 11 7 8.2567 -1.0620 2.7789 12 14 8.5350 -2.4896 5.1380 13 1 8.2781 -3.9520 5.1516 14 1 9.9896 -2.2436 4.9688 15 1 8.0787 -1.8947 6.4199 16 7 2.0183 -0.6905 -1.1963 17 6 2.1470 -0.0181 -2.3572 18 8 1.8581 1.1586 -2.4117 19 6 2.6499 -0.7282 -3.5876 20 6 2.7006 0.2549 -4.7589 21 1 3.2759 1.1384 -4.4824 22 7 1.3407 0.6413 -5.1520 23 6 1.1379 0.2701 -6.4280 24 8 0.1078 0.4488 -7.0481 25 6 2.3440 -0.3863 -6.9678 26 6 2.6350 -0.9383 -8.2168 27 6 3.8744 -1.4982 -8.4475 28 6 4.8303 -1.5158 -7.4469 29 6 4.5490 -0.9702 -6.2056 30 6 3.3160 -0.4094 -5.9651 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6055 -0.2619 2.1369 35 1 1.7518 -1.7716 1.2054 36 1 3.9995 -1.0727 0.4257 37 1 3.8532 0.4370 1.3573 38 1 3.6403 -0.8743 3.4506 39 1 3.7866 -2.3843 2.5197 40 1 6.0174 -0.7567 1.9293 41 1 9.2235 -0.9939 2.8195 42 1 2.2491 -1.6316 -1.1528 43 1 1.9777 -1.5506 -3.8327 44 1 3.6492 -1.1200 -3.3981 45 1 0.6948 1.0908 -4.5849 46 1 1.8917 -0.9273 -9.0001 47 1 4.0999 -1.9249 -9.4136 48 1 5.8000 -1.9519 -7.6362 49 1 5.2969 -0.9858 -5.4265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330940249.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:16 Heat of formation + Delta-G solvation = -39.714657 kcal Electronic energy + Delta-G solvation = -29103.982685 eV Core-core repulsion = 25030.725227 eV Total energy + Delta-G solvation = -4073.257458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67849 -39.95894 -38.33690 -37.12855 -36.24084 -34.89023 -32.81374 -32.05929 -31.34373 -31.00958 -30.20018 -29.35251 -25.80572 -25.16352 -24.24064 -23.08543 -21.89687 -21.27339 -20.87272 -20.71322 -20.41025 -17.75302 -17.38908 -17.09255 -17.04919 -16.64291 -16.33090 -15.71023 -15.39808 -14.89559 -14.76968 -14.59515 -14.46929 -14.16005 -14.06940 -13.82824 -13.55410 -13.41205 -13.12771 -13.06342 -12.94480 -12.75973 -12.35429 -12.25604 -12.14853 -12.07477 -11.46816 -11.36370 -11.22716 -10.88135 -10.85062 -10.53440 -10.46696 -10.26308 -10.09586 -10.04559 -9.72017 -9.71321 -9.40240 -9.25017 -9.19913 -8.89545 -6.95122 -5.79333 -3.08116 0.37122 0.84235 2.39463 2.47039 2.87674 2.93911 3.41593 3.42946 3.45901 3.47055 3.68618 3.96656 4.28432 4.45527 4.51588 4.58598 4.60141 4.70988 4.78188 4.89651 4.96700 5.00462 5.08212 5.13829 5.21222 5.35717 5.37767 5.49781 5.50772 5.54104 5.56397 5.71851 5.77166 5.87069 5.88682 5.95991 5.99751 6.04942 6.14783 6.30159 6.34699 6.35713 6.37614 6.48163 6.71792 6.81409 6.84985 7.28974 7.66443 7.92295 7.99552 8.39888 9.50640 10.09177 10.43505 11.43574 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.002077 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.888077 B =13479.751984 C =15583.686889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.152 3.848 7 N -0.734 5.734 8 C -0.241 4.241 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.718 5.718 17 C 0.516 3.484 18 O -0.544 6.544 19 C -0.150 4.150 20 C 0.188 3.812 21 H 0.114 0.886 22 N -0.707 5.707 23 C 0.559 3.441 24 O -0.531 6.531 25 C -0.156 4.156 26 C -0.048 4.048 27 C -0.126 4.126 28 C -0.087 4.087 29 C -0.098 4.098 30 C -0.079 4.079 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.256 0.744 42 H 0.402 0.598 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.430 0.570 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.135 0.865 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 -1.285 -20.493 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.162 4.162 5 C -0.162 4.162 6 C 0.025 3.975 7 N -0.378 5.378 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.369 5.369 17 C 0.302 3.698 18 O -0.422 6.422 19 C -0.191 4.191 20 C 0.082 3.918 21 H 0.132 0.868 22 N -0.364 5.364 23 C 0.346 3.654 24 O -0.409 6.409 25 C -0.160 4.160 26 C -0.067 4.067 27 C -0.144 4.144 28 C -0.105 4.105 29 C -0.117 4.117 30 C -0.081 4.081 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.237 0.763 43 H 0.121 0.879 44 H 0.133 0.867 45 H 0.273 0.727 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.153 0.847 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.260 -0.449 -20.711 24.597 hybrid contribution 0.699 -0.609 0.962 1.335 sum -12.562 -1.058 -19.750 23.430 Atomic orbital electron populations 1.22168 0.95403 1.02017 1.02453 1.21072 0.93607 0.97827 0.83859 0.89222 1.21858 0.96927 1.00781 0.96619 1.21725 0.93573 1.01442 0.99505 1.20650 0.86213 0.96438 0.94226 1.42368 1.00164 1.66336 1.28974 1.19195 0.89446 1.27237 1.01305 0.91270 1.24753 0.96457 1.01205 0.98668 1.69651 1.07277 1.46954 1.34431 0.86255 0.78975 0.78959 0.81930 1.21261 1.21650 1.21255 1.46108 1.66845 1.14242 1.09684 1.20443 0.77485 0.87281 0.84542 1.90703 1.50504 1.15852 1.85125 1.22068 1.05106 0.99535 0.92367 1.19753 0.83755 0.97552 0.90741 0.86833 1.45937 1.15939 1.60774 1.13744 1.18327 0.86874 0.78127 0.82067 1.90811 1.30265 1.56843 1.62946 1.20451 0.95845 1.03820 0.95840 1.20884 0.96721 0.94108 0.94997 1.21179 0.93163 1.00159 0.99915 1.21389 0.99549 0.97070 0.92491 1.20414 0.95096 0.98229 0.97934 1.20393 0.94646 0.97974 0.95040 0.91490 0.92371 0.92540 0.90248 0.91408 0.92087 0.91962 0.96506 0.96588 0.78357 0.93455 0.76320 0.87908 0.86671 0.72703 0.85023 0.84924 0.84731 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.14 1.42 2.57 -67.93 -0.17 1.24 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -1.33 4.75 -26.73 -0.13 -1.45 16 5 C -0.12 -1.82 5.22 -26.73 -0.14 -1.96 16 6 C 0.15 2.93 6.26 -4.04 -0.03 2.91 16 7 N -0.73 -18.45 5.60 -59.91 -0.34 -18.78 16 8 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 9 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 10 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 11 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 12 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 N -0.72 -6.41 4.53 -53.80 -0.24 -6.65 16 17 C 0.52 5.03 7.69 -10.99 -0.08 4.94 16 18 O -0.54 -6.99 14.61 5.56 0.08 -6.91 16 19 C -0.15 -1.05 5.40 -27.88 -0.15 -1.20 16 20 C 0.19 1.57 3.06 -68.89 -0.21 1.36 16 21 H 0.11 0.99 7.92 -51.93 -0.41 0.57 16 22 N -0.71 -7.16 5.73 -55.86 -0.32 -7.48 16 23 C 0.56 6.75 8.34 -12.62 -0.11 6.65 16 24 O -0.53 -8.26 18.04 5.31 0.10 -8.17 16 25 C -0.16 -1.54 6.26 -105.05 -0.66 -2.19 16 26 C -0.05 -0.39 10.10 -39.18 -0.40 -0.79 16 27 C -0.13 -0.76 10.02 -39.63 -0.40 -1.16 16 28 C -0.09 -0.49 10.05 -39.44 -0.40 -0.89 16 29 C -0.10 -0.63 10.03 -39.74 -0.40 -1.03 16 30 C -0.08 -0.64 5.67 -104.27 -0.59 -1.23 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 10.10 7.67 -40.82 -0.31 9.78 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.40 2.86 8.60 -40.82 -0.35 2.51 16 43 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.43 4.44 8.15 -40.82 -0.33 4.11 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 47 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 48 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 49 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 410.31 15.07 6.18 6.18 Total: -1.00 -35.42 410.31 -10.26 -45.67 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.67 Total: 9.60 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -3.75 Total: -3.30 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.17 Total: -60.24 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.18 Total: -15.07 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.42 -10.26 -45.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330940249.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.957 kcal (2) G-P(sol) polarization free energy of solvation -35.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds