Wall clock time and date at job start Wed Apr 1 2020 04:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47325 * 2 1 4 4 C 1.52999 * 109.47519 * 120.00498 * 2 1 3 5 5 C 1.53007 * 109.47208 * 185.00312 * 4 2 1 6 6 C 1.52992 * 109.46932 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47243 * 179.97438 * 6 5 4 8 8 C 1.36937 * 120.00233 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99920 * 0.02562 * 8 7 6 10 10 C 1.38809 * 119.99989 * 180.02562 * 8 7 6 11 11 N 1.31620 * 119.99947 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00057 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47196 * 59.99985 * 12 10 8 14 14 H 1.48494 * 109.47072 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46517 * 299.99736 * 12 10 8 16 16 N 1.46506 * 109.47179 * 240.00528 * 2 1 3 17 17 C 1.34779 * 119.99913 * 84.99712 * 16 2 1 18 18 O 1.21280 * 120.00120 * 359.97438 * 17 16 2 19 19 C 1.50698 * 120.00062 * 179.97438 * 17 16 2 20 20 C 1.53000 * 109.47271 * 179.97438 * 19 17 16 21 21 H 1.08999 * 110.12413 * 53.41578 * 20 19 17 22 22 N 1.46734 * 110.09629 * 291.82516 * 20 19 17 23 23 C 1.34427 * 108.74543 * 240.79992 * 22 20 19 24 24 O 1.21560 * 124.85037 * 179.97438 * 23 22 20 25 25 C 1.47540 * 110.29353 * 0.02562 * 23 22 20 26 26 C 1.39619 * 132.34531 * 180.02562 * 25 23 22 27 27 C 1.37941 * 119.82864 * 179.97438 * 26 25 23 28 28 C 1.38389 * 120.31782 * 0.02562 * 27 26 25 29 29 C 1.38475 * 120.18785 * 359.97438 * 28 27 26 30 30 C 1.37576 * 119.95861 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47095 * 299.99096 * 1 2 3 32 32 H 1.08996 * 109.47379 * 59.99840 * 1 2 3 33 33 H 1.09004 * 109.46663 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.46993 * 304.99831 * 4 2 1 35 35 H 1.09000 * 109.47369 * 65.00276 * 4 2 1 36 36 H 1.09005 * 109.46640 * 299.99713 * 5 4 2 37 37 H 1.09000 * 109.46985 * 59.99728 * 5 4 2 38 38 H 1.09005 * 109.47575 * 299.99829 * 6 5 4 39 39 H 1.09000 * 109.47467 * 60.00073 * 6 5 4 40 40 H 0.96999 * 119.99370 * 359.97438 * 7 6 5 41 41 H 0.97004 * 119.99760 * 180.02562 * 11 10 8 42 42 H 0.96996 * 119.99771 * 264.99578 * 16 2 1 43 43 H 1.09008 * 109.47071 * 59.99885 * 19 17 16 44 44 H 1.08999 * 109.47365 * 300.00533 * 19 17 16 45 45 H 0.96996 * 125.62869 * 60.82799 * 22 20 19 46 46 H 1.07995 * 120.08893 * 359.95799 * 26 25 23 47 47 H 1.07992 * 119.84114 * 180.02562 * 27 26 25 48 48 H 1.08001 * 119.90417 * 180.27201 * 28 27 26 49 49 H 1.08004 * 120.01804 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 6 4.0749 -1.3340 2.5630 7 7 5.5350 -1.2311 2.6244 8 6 6.2188 -1.8046 3.6631 9 1 5.6817 -2.3331 4.4367 10 6 7.6022 -1.7066 3.7215 11 7 8.2567 -1.0620 2.7789 12 14 8.5350 -2.4896 5.1380 13 1 8.2781 -3.9520 5.1516 14 1 9.9896 -2.2436 4.9688 15 1 8.0787 -1.8947 6.4199 16 7 2.0183 -0.6905 -1.1963 17 6 2.1470 -0.0181 -2.3572 18 8 1.8581 1.1586 -2.4117 19 6 2.6499 -0.7282 -3.5876 20 6 2.7006 0.2549 -4.7589 21 1 3.2759 1.1384 -4.4824 22 7 1.3407 0.6413 -5.1520 23 6 1.1379 0.2701 -6.4280 24 8 0.1078 0.4488 -7.0481 25 6 2.3440 -0.3863 -6.9678 26 6 2.6350 -0.9383 -8.2168 27 6 3.8744 -1.4982 -8.4475 28 6 4.8303 -1.5158 -7.4469 29 6 4.5490 -0.9702 -6.2056 30 6 3.3160 -0.4094 -5.9651 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6055 -0.2619 2.1369 35 1 1.7518 -1.7716 1.2054 36 1 3.9995 -1.0727 0.4257 37 1 3.8532 0.4370 1.3573 38 1 3.6403 -0.8743 3.4506 39 1 3.7866 -2.3843 2.5197 40 1 6.0174 -0.7567 1.9293 41 1 9.2235 -0.9939 2.8195 42 1 2.2491 -1.6316 -1.1528 43 1 1.9777 -1.5506 -3.8327 44 1 3.6492 -1.1200 -3.3981 45 1 0.6948 1.0908 -4.5849 46 1 1.8917 -0.9273 -9.0001 47 1 4.0999 -1.9249 -9.4136 48 1 5.8000 -1.9519 -7.6362 49 1 5.2969 -0.9858 -5.4265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330940249.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:15 Heat of formation + Delta-G solvation = -64.535452 kcal Electronic energy + Delta-G solvation = -29105.058996 eV Core-core repulsion = 25030.725227 eV Total energy + Delta-G solvation = -4074.333769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.39576 -40.76249 -39.08376 -38.10205 -37.15552 -36.42940 -34.18855 -33.07447 -32.29860 -31.62301 -31.23348 -30.43294 -27.23169 -25.96581 -24.86912 -24.71128 -22.67720 -22.30744 -21.97582 -21.51992 -21.11740 -19.11393 -18.52792 -18.13661 -17.79908 -17.46562 -16.92019 -16.67831 -16.45664 -16.19838 -15.81780 -15.50017 -15.39376 -15.26948 -15.13597 -14.89941 -14.74925 -14.46953 -14.05580 -13.88325 -13.78996 -13.47667 -13.40264 -13.16454 -13.00984 -12.90321 -12.73423 -12.65645 -12.37484 -12.26149 -12.07918 -12.02496 -11.83994 -11.69480 -11.48097 -11.14968 -10.91228 -10.88565 -10.52382 -10.05073 -9.96934 -9.80341 -8.99018 -7.94713 -5.23602 -0.25366 0.32062 1.48278 1.51198 1.57398 1.63642 1.71414 2.10781 2.20776 2.56863 2.81701 3.06955 3.27459 3.38832 3.63747 3.65327 3.88956 3.98741 4.03098 4.13176 4.17168 4.19825 4.31002 4.40307 4.43081 4.46387 4.60206 4.61182 4.69085 4.72270 4.79193 4.82770 4.89704 4.94184 5.00613 5.01972 5.14205 5.18055 5.31246 5.38602 5.40149 5.45061 5.47123 5.52008 5.60666 5.70693 5.85644 5.90504 6.28149 6.57307 7.04548 7.26250 7.33928 8.11306 8.33383 9.28697 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.002077 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.888077 B =13479.751984 C =15583.686889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.111 4.111 6 C 0.149 3.851 7 N -0.749 5.749 8 C -0.248 4.248 9 H 0.075 0.925 10 C -0.077 4.077 11 N -0.970 5.970 12 Si 0.974 3.026 13 H -0.276 1.276 14 H -0.295 1.295 15 H -0.279 1.279 16 N -0.712 5.712 17 C 0.512 3.488 18 O -0.580 6.580 19 C -0.139 4.139 20 C 0.187 3.813 21 H 0.109 0.891 22 N -0.704 5.704 23 C 0.550 3.450 24 O -0.581 6.581 25 C -0.185 4.185 26 C -0.060 4.060 27 C -0.122 4.122 28 C -0.078 4.078 29 C -0.100 4.100 30 C -0.078 4.078 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.016 0.984 39 H 0.025 0.975 40 H 0.373 0.627 41 H 0.252 0.748 42 H 0.414 0.586 43 H 0.116 0.884 44 H 0.141 0.859 45 H 0.426 0.574 46 H 0.130 0.870 47 H 0.160 0.840 48 H 0.165 0.835 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.718 -3.394 -20.245 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.022 3.978 7 N -0.392 5.392 8 C -0.380 4.380 9 H 0.093 0.907 10 C -0.269 4.269 11 N -0.620 5.620 12 Si 0.803 3.197 13 H -0.201 1.201 14 H -0.221 1.221 15 H -0.206 1.206 16 N -0.364 5.364 17 C 0.300 3.700 18 O -0.460 6.460 19 C -0.179 4.179 20 C 0.081 3.919 21 H 0.127 0.873 22 N -0.358 5.358 23 C 0.339 3.661 24 O -0.463 6.463 25 C -0.189 4.189 26 C -0.080 4.080 27 C -0.140 4.140 28 C -0.096 4.096 29 C -0.118 4.118 30 C -0.079 4.079 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.204 0.796 41 H 0.060 0.940 42 H 0.251 0.749 43 H 0.134 0.866 44 H 0.159 0.841 45 H 0.268 0.732 46 H 0.148 0.852 47 H 0.177 0.823 48 H 0.183 0.817 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.414 -2.597 -20.425 24.042 hybrid contribution 0.425 0.052 0.886 0.984 sum -11.989 -2.545 -19.539 23.065 Atomic orbital electron populations 1.22096 0.94257 1.02819 1.02186 1.20916 0.94383 0.96634 0.84035 0.91581 1.21747 0.93769 1.02156 0.97178 1.21575 0.96234 0.99687 0.97370 1.20865 0.83169 0.97416 0.96299 1.42626 1.02500 1.65985 1.28092 1.19620 0.90015 1.26522 1.01841 0.90683 1.25591 0.97518 1.02431 1.01377 1.69807 1.07120 1.48726 1.36379 0.85207 0.77112 0.78446 0.78981 1.20147 1.22111 1.20558 1.46063 1.66386 1.14753 1.09159 1.20910 0.76834 0.86931 0.85327 1.90695 1.52068 1.17561 1.85708 1.22046 1.06692 0.98990 0.90210 1.19844 0.82580 0.97863 0.91589 0.87322 1.46019 1.16673 1.59930 1.13193 1.18822 0.87081 0.77825 0.82370 1.90761 1.32219 1.59193 1.64131 1.20401 0.95344 1.05778 0.97335 1.21072 0.97907 0.94531 0.94442 1.21505 0.92076 0.99118 1.01298 1.21815 1.00500 0.95608 0.91701 1.20745 0.94563 0.97430 0.99018 1.20406 0.95078 0.98379 0.94068 0.90712 0.93743 0.91133 0.89618 0.89466 0.91758 0.93596 0.96617 0.95674 0.79568 0.93957 0.74938 0.86600 0.84088 0.73214 0.85239 0.82270 0.81704 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.48 71.98 0.68 -1.89 16 2 C 0.14 2.75 2.57 44.99 0.12 2.86 16 3 H 0.07 1.60 7.58 -2.39 -0.02 1.58 16 4 C -0.11 -2.13 4.75 30.60 0.15 -1.98 16 5 C -0.11 -3.10 5.22 30.59 0.16 -2.94 16 6 C 0.15 5.53 6.26 86.38 0.54 6.07 16 7 N -0.75 -37.37 5.60 -343.46 -1.92 -39.29 16 8 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 9 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 10 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 11 N -0.97 -58.53 13.06 21.65 0.28 -58.24 16 12 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 16 N -0.71 -11.60 4.53 -442.53 -2.00 -13.60 16 17 C 0.51 9.58 7.69 87.66 0.67 10.25 16 18 O -0.58 -15.14 14.61 -3.03 -0.04 -15.18 16 19 C -0.14 -1.73 5.40 29.85 0.16 -1.57 16 20 C 0.19 3.05 3.06 44.24 0.14 3.19 16 21 H 0.11 1.89 7.92 -2.39 -0.02 1.88 16 22 N -0.70 -15.03 5.73 -449.11 -2.57 -17.60 16 23 C 0.55 14.17 8.34 86.75 0.72 14.89 16 24 O -0.58 -19.56 18.04 -3.91 -0.07 -19.63 16 25 C -0.19 -3.69 6.26 -20.14 -0.13 -3.81 16 26 C -0.06 -0.96 10.10 22.53 0.23 -0.73 16 27 C -0.12 -1.18 10.02 22.24 0.22 -0.96 16 28 C -0.08 -0.62 10.05 22.36 0.22 -0.39 16 29 C -0.10 -1.00 10.03 22.17 0.22 -0.78 16 30 C -0.08 -1.18 5.67 -19.64 -0.11 -1.29 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.75 7.75 -2.38 -0.02 1.74 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.37 19.78 7.67 -92.71 -0.71 19.07 16 41 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.41 4.82 8.60 -92.71 -0.80 4.02 16 43 H 0.12 1.19 8.14 -2.38 -0.02 1.18 16 44 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.43 9.51 8.15 -92.71 -0.76 8.76 16 46 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 47 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 48 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 49 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -78.64 410.31 -0.28 -78.92 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -1.28 Total: 33.20 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.31 Total: 4.17 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -6.22 Total: -128.75 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.11 Total: -34.82 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -78.64 -0.28 -78.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330940249.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.385 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds