Wall clock time and date at job start Wed Apr 1 2020 04:18:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 109.47050 * 2 1
4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3
5 5 C 1.50696 * 109.47750 * 294.99928 * 4 2 1
6 6 H 1.08002 * 119.99446 * 0.02562 * 5 4 2
7 7 C 1.37872 * 120.00217 * 180.02562 * 5 4 2
8 8 N 1.31515 * 120.00475 * 359.97438 * 7 5 4
9 9 Si 1.86808 * 119.99810 * 180.02562 * 7 5 4
10 10 H 1.48496 * 109.46959 * 359.97438 * 9 7 5
11 11 H 1.48498 * 109.47024 * 119.99774 * 9 7 5
12 12 H 1.48497 * 109.46795 * 239.99771 * 9 7 5
13 13 C 1.52997 * 109.47164 * 239.99996 * 2 1 3
14 14 N 1.46900 * 109.47171 * 65.00001 * 13 2 1
15 15 C 1.46904 * 110.99705 * 179.97438 * 14 13 2
16 16 C 1.50704 * 109.46884 * 179.97438 * 15 14 13
17 17 C 1.38253 * 120.00045 * 269.73198 * 16 15 14
18 18 C 1.38216 * 120.00075 * 179.80901 * 17 16 15
19 19 C 1.38257 * 119.99490 * 0.39872 * 18 17 16
20 20 C 1.38215 * 120.00549 * 359.85173 * 19 18 17
21 21 C 1.50696 * 120.00180 * 179.97438 * 20 19 18
22 22 C 1.53000 * 110.53512 * 269.27505 * 21 20 19
23 23 N 1.47316 * 110.59819 * 146.44746 * 21 20 19
24 24 C 1.34858 * 106.44067 * 241.52259 * 23 21 20
25 25 O 1.21541 * 123.73095 * 179.97438 * 24 23 21
26 26 N 1.33793 * 112.50022 * 359.85943 * 24 23 21
27 27 C 1.34770 * 111.64320 * 0.09470 * 26 24 23
28 28 O 1.21234 * 127.15680 * 180.02562 * 27 26 24
29 29 C 1.38216 * 119.99730 * 90.00048 * 16 15 14
30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3
32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3
33 33 H 1.09002 * 109.47016 * 55.00506 * 4 2 1
34 34 H 1.09000 * 109.46709 * 175.00070 * 4 2 1
35 35 H 0.96993 * 120.00437 * 180.02562 * 8 7 5
36 36 H 1.09001 * 109.46992 * 185.00551 * 13 2 1
37 37 H 1.08998 * 109.47097 * 304.99739 * 13 2 1
38 38 H 1.00898 * 110.99922 * 303.95716 * 14 13 2
39 39 H 1.08998 * 109.47285 * 300.00060 * 15 14 13
40 40 H 1.09003 * 109.47029 * 60.00806 * 15 14 13
41 41 H 1.08000 * 120.00459 * 359.97438 * 17 16 15
42 42 H 1.07993 * 120.00284 * 180.22915 * 18 17 16
43 43 H 1.08006 * 119.99832 * 179.83172 * 19 18 17
44 44 H 1.08997 * 109.46947 * 59.99915 * 22 21 20
45 45 H 1.09001 * 109.47216 * 180.02562 * 22 21 20
46 46 H 1.08997 * 109.47465 * 300.00707 * 22 21 20
47 47 H 0.97004 * 126.68840 * 61.43771 * 23 21 20
48 48 H 0.97001 * 124.17800 * 180.12133 * 26 24 23
49 49 H 1.07999 * 119.99786 * 359.97438 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 1.6413 0.0571 2.4766
6 1 1.0800 0.9742 2.3757
7 6 1.9931 -0.4017 3.7283
8 7 2.6762 -1.5188 3.8513
9 14 1.4983 0.5628 5.2497
10 1 0.7411 1.7738 4.8434
11 1 0.6449 -0.2869 6.1185
12 1 2.7161 0.9683 5.9964
13 6 2.0401 -0.7212 -1.2492
14 7 1.6515 0.0374 -2.4456
15 6 2.1259 -0.6266 -3.6671
16 6 1.7088 0.1785 -4.8709
17 6 0.4974 -0.0757 -5.4866
18 6 0.1131 0.6654 -6.5882
19 6 0.9440 1.6553 -7.0793
20 6 2.1574 1.9061 -6.4669
21 6 3.0632 2.9847 -7.0025
22 6 4.0292 2.4083 -8.0395
23 7 3.8050 3.6305 -5.9058
24 6 3.4400 4.9287 -5.9106
25 8 3.8684 5.7532 -5.1271
26 7 2.5559 5.2084 -6.8752
27 6 2.2501 4.1151 -7.6014
28 8 1.4845 4.0495 -8.5391
29 6 2.5400 1.1674 -5.3626
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.6053 -1.7198 1.2952
34 1 3.1263 -0.7994 1.2057
35 1 2.9234 -1.8417 4.7318
36 1 3.1264 -0.7995 -1.2055
37 1 1.6055 -1.7198 -1.2951
38 1 0.6529 0.1793 -2.4752
39 1 3.2128 -0.7038 -3.6400
40 1 1.6921 -1.6246 -3.7300
41 1 -0.1499 -0.8516 -5.1053
42 1 -0.8348 0.4693 -7.0670
43 1 0.6450 2.2326 -7.9418
44 1 3.4620 1.9801 -8.8659
45 1 4.6755 3.2019 -8.4147
46 1 4.6387 1.6322 -7.5766
47 1 4.4311 3.2042 -5.2998
48 1 2.1817 6.0894 -7.0326
49 1 3.4881 1.3633 -4.8839
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001331054296.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:18:27
Heat of formation + Delta-G solvation = -33.694317 kcal
Electronic energy + Delta-G solvation = -29598.264998 eV
Core-core repulsion = 25525.268601 eV
Total energy + Delta-G solvation = -4072.996397 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-43.00329 -39.79482 -39.02127 -37.15846 -36.67077 -35.01154 -34.15239 -32.38174
-31.72783 -30.88042 -29.88212 -27.06388 -26.26131 -25.57617 -24.45711 -23.46437
-22.85073 -22.20699 -21.93268 -20.38604 -19.01473 -18.73691 -17.46455 -17.16138
-16.64133 -16.50462 -16.26419 -16.14659 -15.61796 -15.32303 -14.89453 -14.82482
-14.57893 -14.45416 -14.16387 -13.84282 -13.75624 -13.20197 -13.09690 -12.92438
-12.73422 -12.63710 -12.24833 -12.10809 -11.85592 -11.63936 -11.41641 -11.34753
-11.15368 -10.88339 -10.80806 -10.76030 -10.58349 -10.33172 -10.22598 -9.98438
-9.74378 -9.23915 -9.15939 -9.03454 -8.92528 -8.33717 -8.20691 -5.98218
-3.99219 0.87266 1.07341 1.16132 1.97443 2.60517 2.64441 3.32210
3.36612 3.39952 3.44214 3.45368 3.84546 4.25539 4.42623 4.50508
4.59078 4.73978 4.77031 4.87202 4.95850 5.06278 5.10371 5.18492
5.35420 5.37838 5.43631 5.49084 5.57340 5.66802 5.73392 5.76442
5.79544 6.02856 6.08798 6.16800 6.22287 6.33529 6.34102 6.43708
6.49087 6.52954 6.64829 6.89625 6.90333 7.09022 7.15100 7.29336
7.56823 7.69094 7.72898 7.84442 8.02005 8.45930 9.07347 9.64439
11.13336
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013821 B = 0.002120 C = 0.001954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2025.401231 B =13204.549103 C =14326.547914
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.084 4.084
3 H 0.065 0.935
4 C 0.028 3.972
5 C -0.512 4.512
6 H 0.057 0.943
7 C 0.055 3.945
8 N -0.897 5.897
9 Si 0.889 3.111
10 H -0.273 1.273
11 H -0.285 1.285
12 H -0.284 1.284
13 C 0.064 3.936
14 N -0.685 5.685
15 C 0.094 3.906
16 C -0.072 4.072
17 C -0.103 4.103
18 C -0.115 4.115
19 C -0.112 4.112
20 C -0.103 4.103
21 C 0.167 3.833
22 C -0.143 4.143
23 N -0.714 5.714
24 C 0.706 3.294
25 O -0.536 6.536
26 N -0.678 5.678
27 C 0.540 3.460
28 O -0.461 6.461
29 C -0.073 4.073
30 H 0.041 0.959
31 H 0.063 0.937
32 H 0.031 0.969
33 H 0.014 0.986
34 H 0.015 0.985
35 H 0.259 0.741
36 H 0.068 0.932
37 H 0.025 0.975
38 H 0.339 0.661
39 H 0.080 0.920
40 H 0.038 0.962
41 H 0.123 0.877
42 H 0.126 0.874
43 H 0.137 0.863
44 H 0.086 0.914
45 H 0.071 0.929
46 H 0.084 0.916
47 H 0.443 0.557
48 H 0.434 0.566
49 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.106 5.551 -29.171 29.695
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.103 4.103
3 H 0.084 0.916
4 C -0.010 4.010
5 C -0.550 4.550
6 H 0.075 0.925
7 C -0.146 4.146
8 N -0.537 5.537
9 Si 0.717 3.283
10 H -0.197 1.197
11 H -0.211 1.211
12 H -0.211 1.211
13 C -0.064 4.064
14 N -0.317 5.317
15 C -0.035 4.035
16 C -0.073 4.073
17 C -0.122 4.122
18 C -0.133 4.133
19 C -0.131 4.131
20 C -0.104 4.104
21 C 0.076 3.924
22 C -0.201 4.201
23 N -0.380 5.380
24 C 0.405 3.595
25 O -0.409 6.409
26 N -0.349 5.349
27 C 0.325 3.675
28 O -0.330 6.330
29 C -0.092 4.092
30 H 0.060 0.940
31 H 0.082 0.918
32 H 0.050 0.950
33 H 0.032 0.968
34 H 0.034 0.966
35 H 0.068 0.932
36 H 0.086 0.914
37 H 0.043 0.957
38 H 0.158 0.842
39 H 0.098 0.902
40 H 0.056 0.944
41 H 0.141 0.859
42 H 0.144 0.856
43 H 0.155 0.845
44 H 0.105 0.895
45 H 0.090 0.910
46 H 0.102 0.898
47 H 0.289 0.711
48 H 0.276 0.724
49 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 0.367 6.195 -29.075 29.730
hybrid contribution -0.801 -0.130 1.166 1.420
sum -0.434 6.066 -27.909 28.564
Atomic orbital electron populations
1.21745 0.96703 1.00396 1.00307 1.21223 0.94862 1.00129 0.94074
0.91612 1.19113 0.96136 0.95353 0.90365 1.21271 1.34512 1.08268
0.90964 0.92516 1.25019 0.95333 0.95094 0.99118 1.69969 1.39187
1.21264 1.23278 0.86579 0.78285 0.80138 0.83279 1.19736 1.21123
1.21063 1.22171 1.00427 0.94447 0.89378 1.60634 1.19865 1.50324
1.00839 1.20911 1.00991 0.94041 0.87557 1.19851 0.94400 0.96685
0.96355 1.21210 0.95865 0.99455 0.95648 1.21094 0.99672 0.95819
0.96692 1.21291 0.93183 0.98281 1.00331 1.19269 0.95491 0.97622
0.98046 1.20116 0.92095 0.91637 0.88517 1.22023 0.98356 1.02158
0.97570 1.45753 1.48067 1.08107 1.36087 1.15901 0.79099 0.83707
0.80745 1.91093 1.58510 1.49850 1.41398 1.44297 1.43555 1.14528
1.32488 1.20583 0.80840 0.84526 0.81563 1.90797 1.33477 1.83495
1.25247 1.20664 0.99949 0.94298 0.94302 0.94027 0.91818 0.95030
0.96759 0.96649 0.93153 0.91353 0.95718 0.84165 0.90168 0.94433
0.85868 0.85605 0.84518 0.89496 0.90987 0.89758 0.71080 0.72364
0.85796
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.47 8.77 37.16 0.33 -2.14 16
2 C -0.08 -1.68 2.55 -90.62 -0.23 -1.92 16
3 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16
4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16
5 C -0.51 -14.29 8.41 -34.44 -0.29 -14.58 16
6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16
7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16
8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16
9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16
10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
13 C 0.06 1.06 5.14 -3.83 -0.02 1.04 16
14 N -0.68 -9.43 6.49 -115.05 -0.75 -10.18 16
15 C 0.09 1.03 5.81 -4.97 -0.03 1.00 16
16 C -0.07 -0.71 5.39 -104.62 -0.56 -1.28 16
17 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16
18 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16
19 C -0.11 -0.97 9.18 -39.58 -0.36 -1.34 16
20 C -0.10 -0.86 4.88 -104.63 -0.51 -1.37 16
21 C 0.17 1.16 1.16 -133.25 -0.15 1.01 16
22 C -0.14 -0.68 8.96 37.16 0.33 -0.35 16
23 N -0.71 -5.25 5.35 -53.93 -0.29 -5.54 16
24 C 0.71 6.83 9.00 -87.72 -0.79 6.04 16
25 O -0.54 -7.27 18.04 5.33 0.10 -7.17 16
26 N -0.68 -5.16 5.70 -15.71 -0.09 -5.25 16
27 C 0.54 4.35 6.98 -10.56 -0.07 4.28 16
28 O -0.46 -4.46 15.91 5.60 0.09 -4.37 16
29 C -0.07 -0.66 9.00 -39.58 -0.36 -1.02 16
30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16
31 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16
32 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16
33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16
34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
38 H 0.34 4.59 6.98 -39.29 -0.27 4.31 16
39 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16
40 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16
41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16
42 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16
43 H 0.14 1.18 5.69 -52.48 -0.30 0.88 16
44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16
45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
46 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16
47 H 0.44 2.66 8.14 -40.82 -0.33 2.33 16
48 H 0.43 2.45 8.96 -40.82 -0.37 2.08 16
49 H 0.12 0.98 7.02 -52.49 -0.37 0.61 16
LS Contribution 401.89 15.07 6.06 6.06
Total: -1.00 -33.56 401.89 -10.24 -43.79
By element:
Atomic # 1 Polarization: 10.69 SS G_CDS: -7.34 Total: 3.35 kcal
Atomic # 6 Polarization: -7.52 SS G_CDS: -3.73 Total: -11.25 kcal
Atomic # 7 Polarization: -46.74 SS G_CDS: -0.39 Total: -47.13 kcal
Atomic # 8 Polarization: -11.73 SS G_CDS: 0.19 Total: -11.55 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -33.56 -10.24 -43.79 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331054296.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.098 kcal
(2) G-P(sol) polarization free energy of solvation -33.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.459 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.694 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds