Wall clock time and date at job start Wed Apr 1 2020 04:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.50696 * 109.47750 * 294.99928 * 4 2 1 6 6 H 1.08002 * 119.99446 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00217 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00475 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99810 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46959 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47024 * 119.99774 * 9 7 5 12 12 H 1.48497 * 109.46795 * 239.99771 * 9 7 5 13 13 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 14 14 N 1.46900 * 109.47171 * 65.00001 * 13 2 1 15 15 C 1.46904 * 110.99705 * 179.97438 * 14 13 2 16 16 C 1.50704 * 109.46884 * 179.97438 * 15 14 13 17 17 C 1.38253 * 120.00045 * 269.73198 * 16 15 14 18 18 C 1.38216 * 120.00075 * 179.80901 * 17 16 15 19 19 C 1.38257 * 119.99490 * 0.39872 * 18 17 16 20 20 C 1.38215 * 120.00549 * 359.85173 * 19 18 17 21 21 C 1.50696 * 120.00180 * 179.97438 * 20 19 18 22 22 C 1.53000 * 110.53512 * 269.27505 * 21 20 19 23 23 N 1.47316 * 110.59819 * 146.44746 * 21 20 19 24 24 C 1.34858 * 106.44067 * 241.52259 * 23 21 20 25 25 O 1.21541 * 123.73095 * 179.97438 * 24 23 21 26 26 N 1.33793 * 112.50022 * 359.85943 * 24 23 21 27 27 C 1.34770 * 111.64320 * 0.09470 * 26 24 23 28 28 O 1.21234 * 127.15680 * 180.02562 * 27 26 24 29 29 C 1.38216 * 119.99730 * 90.00048 * 16 15 14 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 34 34 H 1.09000 * 109.46709 * 175.00070 * 4 2 1 35 35 H 0.96993 * 120.00437 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46992 * 185.00551 * 13 2 1 37 37 H 1.08998 * 109.47097 * 304.99739 * 13 2 1 38 38 H 1.00898 * 110.99922 * 303.95716 * 14 13 2 39 39 H 1.08998 * 109.47285 * 300.00060 * 15 14 13 40 40 H 1.09003 * 109.47029 * 60.00806 * 15 14 13 41 41 H 1.08000 * 120.00459 * 359.97438 * 17 16 15 42 42 H 1.07993 * 120.00284 * 180.22915 * 18 17 16 43 43 H 1.08006 * 119.99832 * 179.83172 * 19 18 17 44 44 H 1.08997 * 109.46947 * 59.99915 * 22 21 20 45 45 H 1.09001 * 109.47216 * 180.02562 * 22 21 20 46 46 H 1.08997 * 109.47465 * 300.00707 * 22 21 20 47 47 H 0.97004 * 126.68840 * 61.43771 * 23 21 20 48 48 H 0.97001 * 124.17800 * 180.12133 * 26 24 23 49 49 H 1.07999 * 119.99786 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6762 -1.5188 3.8513 9 14 1.4983 0.5628 5.2497 10 1 0.7411 1.7738 4.8434 11 1 0.6449 -0.2869 6.1185 12 1 2.7161 0.9683 5.9964 13 6 2.0401 -0.7212 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6266 -3.6671 16 6 1.7088 0.1785 -4.8709 17 6 0.4974 -0.0757 -5.4866 18 6 0.1131 0.6654 -6.5882 19 6 0.9440 1.6553 -7.0793 20 6 2.1574 1.9061 -6.4669 21 6 3.0632 2.9847 -7.0025 22 6 4.0292 2.4083 -8.0395 23 7 3.8050 3.6305 -5.9058 24 6 3.4400 4.9287 -5.9106 25 8 3.8684 5.7532 -5.1271 26 7 2.5559 5.2084 -6.8752 27 6 2.2501 4.1151 -7.6014 28 8 1.4845 4.0495 -8.5391 29 6 2.5400 1.1674 -5.3626 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 2.9234 -1.8417 4.7318 36 1 3.1264 -0.7995 -1.2055 37 1 1.6055 -1.7198 -1.2951 38 1 0.6529 0.1793 -2.4752 39 1 3.2128 -0.7038 -3.6400 40 1 1.6921 -1.6246 -3.7300 41 1 -0.1499 -0.8516 -5.1053 42 1 -0.8348 0.4693 -7.0670 43 1 0.6450 2.2326 -7.9418 44 1 3.4620 1.9801 -8.8659 45 1 4.6755 3.2019 -8.4147 46 1 4.6387 1.6322 -7.5766 47 1 4.4311 3.2042 -5.2998 48 1 2.1817 6.0894 -7.0326 49 1 3.4881 1.3633 -4.8839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331054296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:27 Heat of formation + Delta-G solvation = -33.694317 kcal Electronic energy + Delta-G solvation = -29598.264998 eV Core-core repulsion = 25525.268601 eV Total energy + Delta-G solvation = -4072.996397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.00329 -39.79482 -39.02127 -37.15846 -36.67077 -35.01154 -34.15239 -32.38174 -31.72783 -30.88042 -29.88212 -27.06388 -26.26131 -25.57617 -24.45711 -23.46437 -22.85073 -22.20699 -21.93268 -20.38604 -19.01473 -18.73691 -17.46455 -17.16138 -16.64133 -16.50462 -16.26419 -16.14659 -15.61796 -15.32303 -14.89453 -14.82482 -14.57893 -14.45416 -14.16387 -13.84282 -13.75624 -13.20197 -13.09690 -12.92438 -12.73422 -12.63710 -12.24833 -12.10809 -11.85592 -11.63936 -11.41641 -11.34753 -11.15368 -10.88339 -10.80806 -10.76030 -10.58349 -10.33172 -10.22598 -9.98438 -9.74378 -9.23915 -9.15939 -9.03454 -8.92528 -8.33717 -8.20691 -5.98218 -3.99219 0.87266 1.07341 1.16132 1.97443 2.60517 2.64441 3.32210 3.36612 3.39952 3.44214 3.45368 3.84546 4.25539 4.42623 4.50508 4.59078 4.73978 4.77031 4.87202 4.95850 5.06278 5.10371 5.18492 5.35420 5.37838 5.43631 5.49084 5.57340 5.66802 5.73392 5.76442 5.79544 6.02856 6.08798 6.16800 6.22287 6.33529 6.34102 6.43708 6.49087 6.52954 6.64829 6.89625 6.90333 7.09022 7.15100 7.29336 7.56823 7.69094 7.72898 7.84442 8.02005 8.45930 9.07347 9.64439 11.13336 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.002120 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.401231 B =13204.549103 C =14326.547914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.094 3.906 16 C -0.072 4.072 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.103 4.103 21 C 0.167 3.833 22 C -0.143 4.143 23 N -0.714 5.714 24 C 0.706 3.294 25 O -0.536 6.536 26 N -0.678 5.678 27 C 0.540 3.460 28 O -0.461 6.461 29 C -0.073 4.073 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.339 0.661 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.443 0.557 48 H 0.434 0.566 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 5.551 -29.171 29.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.317 5.317 15 C -0.035 4.035 16 C -0.073 4.073 17 C -0.122 4.122 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.104 4.104 21 C 0.076 3.924 22 C -0.201 4.201 23 N -0.380 5.380 24 C 0.405 3.595 25 O -0.409 6.409 26 N -0.349 5.349 27 C 0.325 3.675 28 O -0.330 6.330 29 C -0.092 4.092 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.155 0.845 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.289 0.711 48 H 0.276 0.724 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.367 6.195 -29.075 29.730 hybrid contribution -0.801 -0.130 1.166 1.420 sum -0.434 6.066 -27.909 28.564 Atomic orbital electron populations 1.21745 0.96703 1.00396 1.00307 1.21223 0.94862 1.00129 0.94074 0.91612 1.19113 0.96136 0.95353 0.90365 1.21271 1.34512 1.08268 0.90964 0.92516 1.25019 0.95333 0.95094 0.99118 1.69969 1.39187 1.21264 1.23278 0.86579 0.78285 0.80138 0.83279 1.19736 1.21123 1.21063 1.22171 1.00427 0.94447 0.89378 1.60634 1.19865 1.50324 1.00839 1.20911 1.00991 0.94041 0.87557 1.19851 0.94400 0.96685 0.96355 1.21210 0.95865 0.99455 0.95648 1.21094 0.99672 0.95819 0.96692 1.21291 0.93183 0.98281 1.00331 1.19269 0.95491 0.97622 0.98046 1.20116 0.92095 0.91637 0.88517 1.22023 0.98356 1.02158 0.97570 1.45753 1.48067 1.08107 1.36087 1.15901 0.79099 0.83707 0.80745 1.91093 1.58510 1.49850 1.41398 1.44297 1.43555 1.14528 1.32488 1.20583 0.80840 0.84526 0.81563 1.90797 1.33477 1.83495 1.25247 1.20664 0.99949 0.94298 0.94302 0.94027 0.91818 0.95030 0.96759 0.96649 0.93153 0.91353 0.95718 0.84165 0.90168 0.94433 0.85868 0.85605 0.84518 0.89496 0.90987 0.89758 0.71080 0.72364 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.77 37.16 0.33 -2.14 16 2 C -0.08 -1.68 2.55 -90.62 -0.23 -1.92 16 3 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.29 8.41 -34.44 -0.29 -14.58 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.06 1.06 5.14 -3.83 -0.02 1.04 16 14 N -0.68 -9.43 6.49 -115.05 -0.75 -10.18 16 15 C 0.09 1.03 5.81 -4.97 -0.03 1.00 16 16 C -0.07 -0.71 5.39 -104.62 -0.56 -1.28 16 17 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 18 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 19 C -0.11 -0.97 9.18 -39.58 -0.36 -1.34 16 20 C -0.10 -0.86 4.88 -104.63 -0.51 -1.37 16 21 C 0.17 1.16 1.16 -133.25 -0.15 1.01 16 22 C -0.14 -0.68 8.96 37.16 0.33 -0.35 16 23 N -0.71 -5.25 5.35 -53.93 -0.29 -5.54 16 24 C 0.71 6.83 9.00 -87.72 -0.79 6.04 16 25 O -0.54 -7.27 18.04 5.33 0.10 -7.17 16 26 N -0.68 -5.16 5.70 -15.71 -0.09 -5.25 16 27 C 0.54 4.35 6.98 -10.56 -0.07 4.28 16 28 O -0.46 -4.46 15.91 5.60 0.09 -4.37 16 29 C -0.07 -0.66 9.00 -39.58 -0.36 -1.02 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 32 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.34 4.59 6.98 -39.29 -0.27 4.31 16 39 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.14 1.18 5.69 -52.48 -0.30 0.88 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.44 2.66 8.14 -40.82 -0.33 2.33 16 48 H 0.43 2.45 8.96 -40.82 -0.37 2.08 16 49 H 0.12 0.98 7.02 -52.49 -0.37 0.61 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -33.56 401.89 -10.24 -43.79 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.34 Total: 3.35 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -3.73 Total: -11.25 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.39 Total: -47.13 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.19 Total: -11.55 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.56 -10.24 -43.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331054296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.098 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds